CX294920

Overview
NameCX294920
Unique NameCX294920
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length659
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig596 contig Ccv1_Contig596:1..659. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294920 vs. ExPASy Swiss-Prot
Match: RL31_ARATH (60S ribosomal protein L3-1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=5)

HSP 1 Score: 320.087 bits (819), Expect = 6.386e-87
Identity = 154/195 (78.97%), Postives = 168/195 (86.15%), Query Frame = 2
Query:   65 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKV 649
            MSHRKFEHPRHGSLGFLPRKRA RHRGKVKAFPKDD +KPC+ TAF+GYKAGMTHIVR+VEKPGSKLHKKETCEAVTIIET          YVKTPRGLRSLNTVWAQHLSEEVRRRFYKNW             QY++++GKK IQAQLEK+KKYA+V+RVLAHTQIRKMKGLKQKKAH+MEIQ+NGGTIA+KV
Sbjct:    1 MSHRKFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWAKSKKKAFTGYAKQYDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIRKMKGLKQKKAHMMEIQINGGTIAQKV 195          
BLAST of CX294920 vs. ExPASy Swiss-Prot
Match: RL3_ORYSJ (60S ribosomal protein L3 OS=Oryza sativa subsp. japonica GN=RPL3 PE=2 SV=2)

HSP 1 Score: 318.931 bits (816), Expect = 1.423e-86
Identity = 153/195 (78.46%), Postives = 168/195 (86.15%), Query Frame = 2
Query:   65 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKV 649
            MSHRKFEHPRHGSLGFLPRKR++RHRGKVK+FPKDD SKPC LT+F+GYKAGMTHIVR+VEKPGSKLHKKETCEAVTIIET          YVKTPRGLRSLN+VWAQHLSEEVRRRFYKNWC            +Y++D GKK IQ QLEK+KKYAS+VRV+AHTQIRKMKGLKQKKAHLMEIQ+NGGTIA+KV
Sbjct:    1 MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIRKMKGLKQKKAHLMEIQINGGTIADKV 195          
BLAST of CX294920 vs. ExPASy Swiss-Prot
Match: RL32_ARATH (60S ribosomal protein L3-2 OS=Arabidopsis thaliana GN=ARP2 PE=2 SV=4)

HSP 1 Score: 317.775 bits (813), Expect = 3.169e-86
Identity = 155/195 (79.49%), Postives = 167/195 (85.64%), Query Frame = 2
Query:   65 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKV 649
            MSHRKFEHPRHGSLGFLPRKRA+RHRGKVKAFPKDDP+KPCRLT+FLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIET          YVKTPRGLRSL TVWAQHLSEE+RRRFYKNW             ++ET+EGKK IQ+QLEK+KKY SV+RVLAHTQIRKMKGLKQKKAHL EIQ+NGG IA+KV
Sbjct:    1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTSFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPMVVVGVVGYVKTPRGLRSLCTVWAQHLSEELRRRFYKNWAKSKKKAFTRYSKKHETEEGKKDIQSQLEKMKKYCSVIRVLAHTQIRKMKGLKQKKAHLNEIQINGGDIAKKV 195          
BLAST of CX294920 vs. ExPASy Swiss-Prot
Match: RL3B_SCHPO (60S ribosomal protein L3-B OS=Schizosaccharomyces pombe GN=rpl3b PE=2 SV=2)

HSP 1 Score: 261.922 bits (668), Expect = 2.064e-69
Identity = 135/195 (69.23%), Postives = 151/195 (77.44%), Query Frame = 2
Query:   65 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKV 649
            MSH KFE PRHGSLGFLPRKRA+R RGKVKAFPKDD SKP  LTAFLGYKAGMTHIVRD+++PGSK+HK+E  EAVTIIET          YV+TPRGLRSL TVWA+HLSEEV+RRFYKNW             +Y   E  +SI  +LE+IKKY SVVRVLAHTQIRK   L QKKAHLMEIQVNGG++A+KV
Sbjct:    1 MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGSKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKSKKKAFTKYAKKYA--ESTQSINRELERIKKYCSVVRVLAHTQIRKTP-LAQKKAHLMEIQVNGGSVADKV 192          
BLAST of CX294920 vs. ExPASy Swiss-Prot
Match: RL3A_SCHPO (60S ribosomal protein L3-A OS=Schizosaccharomyces pombe GN=rpl3a PE=1 SV=2)

HSP 1 Score: 261.536 bits (667), Expect = 2.696e-69
Identity = 134/195 (68.72%), Postives = 151/195 (77.44%), Query Frame = 2
Query:   65 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKV 649
            MSH KFE PRHGSLGFLPRKRA+R RGKVKAFPKDD SKP  LTAFLGYKAGMTHIVRD+++PGSK+HK+E  EAVT+IET          YV+TPRGLRSL TVWA+HLSEEV+RRFYKNW             +Y   E  +SI  +LE+IKKY SVVRVLAHTQIRK   L QKKAHLMEIQVNGG++A+KV
Sbjct:    1 MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGSKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKSKKKAFTKYAKKYA--ESTQSINRELERIKKYCSVVRVLAHTQIRKTP-LAQKKAHLMEIQVNGGSVADKV 192          
BLAST of CX294920 vs. ExPASy Swiss-Prot
Match: RL3_ASPFU (60S ribosomal protein L3 OS=Aspergillus fumigatus GN=rpl3 PE=1 SV=2)

HSP 1 Score: 255.373 bits (651), Expect = 1.932e-67
Identity = 128/195 (65.64%), Postives = 151/195 (77.44%), Query Frame = 2
Query:   65 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKV 649
            MSHRK+E PRHGSL FLPRKRAARHRGKVK+FPKDDP KP  LTA +GYKAGMT +VRD+++PG+K+HKKE  EAVTIIET          Y++TPRGLRSL TVWA+HLS+EV+RRFYKNW             ++  + G  SI  +LE+IKKY +VVRVLAHTQIRK   LKQKKAHLMEIQVNGG++A+KV
Sbjct:    1 MSHRKYEAPRHGSLAFLPRKRAARHRGKVKSFPKDDPKKPVHLTASMGYKAGMTTVVRDLDRPGAKMHKKEIVEAVTIIETPPLVAVGVVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAFTKYAKKHAEENG-ASITRELERIKKYCTVVRVLAHTQIRKTP-LKQKKAHLMEIQVNGGSVADKV 193          
BLAST of CX294920 vs. ExPASy Swiss-Prot
Match: RL3_RAT (60S ribosomal protein L3 OS=Rattus norvegicus GN=Rpl3 PE=1 SV=3)

HSP 1 Score: 252.292 bits (643), Expect = 1.635e-66
Identity = 120/195 (61.54%), Postives = 150/195 (76.92%), Query Frame = 2
Query:   65 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKV 649
            MSHRKF  PRHGSLGFLPRKR++RHRGKVK+FPKDDPSKP  LTAFLGYKAGMTHIVR+V++PGSK++KKE  EAVTI+ET          YV+TPRGLR+  TV+A+H+S+E +RRFYKNW             +++ D GKK ++     +KKY  V+R++AHTQ+R +  L+QKKAHLMEIQVNGGT+AEK+
Sbjct:    1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAHTQMRLLP-LRQKKAHLMEIQVNGGTVAEKL 194          
BLAST of CX294920 vs. ExPASy Swiss-Prot
Match: RL3_HUMAN (60S ribosomal protein L3 OS=Homo sapiens GN=RPL3 PE=1 SV=2)

HSP 1 Score: 252.292 bits (643), Expect = 1.635e-66
Identity = 120/195 (61.54%), Postives = 151/195 (77.44%), Query Frame = 2
Query:   65 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKV 649
            MSHRKF  PRHGSLGFLPRKR++RHRGKVK+FPKDDPSKP  LTAFLGYKAGMTHIVR+V++PGSK++KKE  EAVTI+ET          YV+TPRGLR+  TV+A+H+S+E +RRFYKNW             +++ ++GKK ++     +KKY  V+RV+AHTQ+R +  L+QKKAHLMEIQVNGGT+AEK+
Sbjct:    1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLP-LRQKKAHLMEIQVNGGTVAEKL 194          
BLAST of CX294920 vs. ExPASy Swiss-Prot
Match: RL3_MACFA (60S ribosomal protein L3 OS=Macaca fascicularis GN=RPL3 PE=2 SV=3)

HSP 1 Score: 249.595 bits (636), Expect = 1.060e-65
Identity = 119/195 (61.03%), Postives = 150/195 (76.92%), Query Frame = 2
Query:   65 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKV 649
            MSHRKF  PRHGSLGFLPRKR++RHRGKVK+FPKDDPSKP  LTAFLGYKAGMTHIVR+V++PGSK++KKE   AVTI+ET          YV+TPRGLR+  TV+A+H+S+E +RRFYKNW             +++ ++GKK ++     +KKY  V+RV+AHTQ+R +  L+QKKAHLMEIQVNGGT+AEK+
Sbjct:    1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVVAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLP-LRQKKAHLMEIQVNGGTVAEKL 194          
BLAST of CX294920 vs. ExPASy Swiss-Prot
Match: RL3_DICDI (60S ribosomal protein L3 OS=Dictyostelium discoideum GN=rpl3 PE=1 SV=2)

HSP 1 Score: 249.595 bits (636), Expect = 1.060e-65
Identity = 126/196 (64.29%), Postives = 149/196 (76.02%), Query Frame = 2
Query:   65 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWC-XXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKV 649
            MSHRKFE PRHG+LGF PRKRAARH+GKVK+FPKDD ++   LTAF+GYKAGMTH+VRD+EKPGSK+HKKE  EAVTIIE           YV+T +GL++  TVWAQHLS+  RRR YKNW              QYET+EGKKSI+A L+ IKK  SVVRV+AHTQ+ K+K L QKKAH++EIQVNGG+I EKV
Sbjct:    1 MSHRKFEAPRHGNLGFRPRKRAARHQGKVKSFPKDDRTQKVHLTAFMGYKAGMTHVVRDLEKPGSKMHKKEIVEAVTIIECPPMYIVGLVGYVETAQGLKTYKTVWAQHLSDNFRRRLYKNWYKSKSKKAFTKYVKQYETEEGKKSIEASLQAIKKRCSVVRVIAHTQVHKLK-LTQKKAHVLEIQVNGGSIVEKV 195          
The following BLAST results are available for this feature:
BLAST of CX294920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
RL31_ARATH6.386e-8778.9760S ribosomal protein L3-1 OS=Arabidopsis thaliana... [more]
RL3_ORYSJ1.423e-8678.4660S ribosomal protein L3 OS=Oryza sativa subsp. ja... [more]
RL32_ARATH3.169e-8679.4960S ribosomal protein L3-2 OS=Arabidopsis thaliana... [more]
RL3B_SCHPO2.064e-6969.2360S ribosomal protein L3-B OS=Schizosaccharomyces ... [more]
RL3A_SCHPO2.696e-6968.7260S ribosomal protein L3-A OS=Schizosaccharomyces ... [more]
RL3_ASPFU1.932e-6765.6460S ribosomal protein L3 OS=Aspergillus fumigatus ... [more]
RL3_RAT1.635e-6661.5460S ribosomal protein L3 OS=Rattus norvegicus GN=R... [more]
RL3_HUMAN1.635e-6661.5460S ribosomal protein L3 OS=Homo sapiens GN=RPL3 P... [more]
RL3_MACFA1.060e-6561.0360S ribosomal protein L3 OS=Macaca fascicularis GN... [more]
RL3_DICDI1.060e-6564.2960S ribosomal protein L3 OS=Dictyostelium discoide... [more]

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Properties
Property NameValue
Genbank descriptionC05057E08SK PhIFruit1 Citrus clementina cDNA clone C05057E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294920 ID=CX294920; Name=CX294920; organism=Citrus clementina; type=EST; length=659bp
CTCGTGCCGAATTCGGCACGAGGAGCACAACGAGTCAGTCGCCGCAGCAG
CTCAGAGGAGGAGAATGTCTCACAGGAAGTTTGAGCACCCAAGGCATGGT
TCCCTTGGATTTCTTCCAAGGAAGCGAGCTGCTCGTCACAGAGGAAAGGT
GAAGGCTTTTCCCAAGGATGACCCAAGCAAGCCTTGCAGGCTCACTGCCT
TTTTGGGTTACAAGGCTGGGATGACCCACATTGTTAGGGATGTCGAGAAA
CCTGGATCTAAGCTTCACAAGAAGGAGACCTGTGAGGCTGTTACCATTAT
TGAAACCCCTCCAATGATGGTGGTTGGAGTTGTGGGATATGTGAAGACAC
CTCGTGGTCTTCGCTCTTTGAACACTGTATGGGCTCAGCATCTTAGTGAG
GAGGTGAGAAGAAGGTTCTACAAGAACTGGTGCAAATCCAAGAAGAAGGC
TTTCACAAAATACTCAAAGCAGTATGAAACAGATGAAGGGAAGAAAAGTA
TCCAAGCTCAGCTGGAGAAGATCAAGAAGTATGCATCTGTTGTTCGTGTT
CTTGCTCACACTCAGATTAGGAAAATGAAGGGTTTGAAGCAGAAGAAGGC
ACACCTGATGGAAATCCAGGTCAATGGTGGCACCATTGCTGAAAAAGTGA
CTATGCATA
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