CX294925

Overview
NameCX294925
Unique NameCX294925
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length450
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294925 vs. ExPASy Swiss-Prot
Match: CYSP1_ORYSJ (Cysteine protease 1 OS=Oryza sativa subsp. japonica GN=CP1 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 5.677e-13
Identity = 34/54 (62.96%), Postives = 40/54 (74.07%), Query Frame = 3
Query:    6 VRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPVKNSQNSAKPKPHSSA 167
            VRNSWG DWGENGY++++RN +   TGKCGIAM ASYP+K   N  KP P S A
Sbjct:  337 VRNSWGPDWGENGYIRMERN-VTARTGKCGIAMMASYPIKKGPN-PKPSPPSPA 388          
BLAST of CX294925 vs. ExPASy Swiss-Prot
Match: ORYB_ORYSJ (Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 9.684e-13
Identity = 31/51 (60.78%), Postives = 39/51 (76.47%), Query Frame = 3
Query:    3 LVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPVKNSQNSAKPKP 155
            +VRNSWG  WGE+GYV+++RN ++  TGKCGIAM ASYP K+  N  KP P
Sbjct:  319 IVRNSWGPKWGESGYVRMERN-INVTTGKCGIAMMASYPTKSGANPPKPSP 368          
BLAST of CX294925 vs. ExPASy Swiss-Prot
Match: GCP1_ARATH (Germination-specific cysteine protease 1 OS=Arabidopsis thaliana GN=GCP1 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.652e-12
Identity = 31/54 (57.41%), Postives = 40/54 (74.07%), Query Frame = 3
Query:    3 LVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPVKNSQNSAKPKPHSS 164
            +VRNSWG  WGE GY++++RNL  + +GKCGIA+EASYPVK S N  +    SS
Sbjct:  322 IVRNSWGPRWGEEGYIRMERNLAASKSGKCGIAVEASYPVKYSPNPVRGNTISS 375          
BLAST of CX294925 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.806e-12
Identity = 28/51 (54.90%), Postives = 40/51 (78.43%), Query Frame = 3
Query:    3 LVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPVKNSQNSAKPKP 155
            +VRNSWG  WGE+GY+++ RN+  +++GKCGIA+E SYP+KN +N   P P
Sbjct:  314 IVRNSWGKSWGESGYLRMARNIA-SSSGKCGIAIEPSYPIKNGENPPNPGP 363          
BLAST of CX294925 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.071e-11
Identity = 28/51 (54.90%), Postives = 39/51 (76.47%), Query Frame = 3
Query:    3 LVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPVKNSQNSAKPKP 155
            +VRNSWG  WGE+GYV+++RN +  ++GKCGIA+E SYP+K  +N   P P
Sbjct:  306 IVRNSWGKSWGESGYVRMERN-IKASSGKCGIAVEPSYPLKKGENPPNPGP 355          
BLAST of CX294925 vs. ExPASy Swiss-Prot
Match: CYSP_HEMSP (Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN102 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.398e-11
Identity = 28/45 (62.22%), Postives = 37/45 (82.22%), Query Frame = 3
Query:    3 LVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPVKNSQN 137
            +V+NSWG +WGE+GY+++QR + D   GKCGIAMEASYP+K S N
Sbjct:  307 IVKNSWGEEWGESGYIRMQRGISD-KRGKCGIAMEASYPIKTSAN 350          
BLAST of CX294925 vs. ExPASy Swiss-Prot
Match: CYSP4_BRANA (Cysteine proteinase COT44 (Fragment) OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.069e-11
Identity = 28/48 (58.33%), Postives = 40/48 (83.33%), Query Frame = 3
Query:    3 LVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPVKNSQNSAK 146
            +VRNSWG+ WGE+GY++++RN+  + +GKCGIA+EASYPVK S N  +
Sbjct:  277 IVRNSWGTRWGEDGYIRMERNVA-SKSGKCGIAIEASYPVKYSPNPVR 323          
The following BLAST results are available for this feature:
BLAST of CX294925 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
CYSP1_ORYSJ5.677e-1362.96Cysteine protease 1 OS=Oryza sativa subsp. japonic... [more]
ORYB_ORYSJ9.684e-1360.78Oryzain beta chain OS=Oryza sativa subsp. japonica... [more]
GCP1_ARATH1.652e-1257.41Germination-specific cysteine protease 1 OS=Arabid... [more]
RD21A_ARATH4.806e-1254.90Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
ORYA_ORYSJ1.071e-1154.90Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
CYSP_HEMSP1.398e-1162.22Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN10... [more]
CYSP4_BRANA4.069e-1158.33Cysteine proteinase COT44 (Fragment) OS=Brassica n... [more]
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Properties
Property NameValue
Genbank descriptionC05057F04SK PhIFruit1 Citrus clementina cDNA clone C05057F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294925 ID=CX294925; Name=CX294925; organism=Citrus clementina; type=EST; length=450bp
GGCTTGTGAGGAATTCCTGGGGCAGCGACTGGGGTGAAAACGGATACGTG
AAATTGCAGCGTAATCTGCTGGATACAAACACTGGCAAATGCGGAATTGC
AATGGAGGCTTCTTATCCCGTCAAGAATTCCCAAAACTCTGCTAAGCCTA
AGCCTCACAGCAGCGCTTGAACATCGTTTGTATGTGTTGTGGCTGATGGG
TTCGGAGAAGAAGAAAAAGGTTATTAAAGTTGCAAATAATGTTGTTTAGT
TTATCGTCATATTTGTGTCCGCTTGGTTGTTTACAATTCATGCCCTCTGT
TCCTTATTTTTAAGTTTGCGGGAGGACGAGCAGGCTATCTATCTTATTTG
GATAATGTTTCTTGTACTGTACATAGAGTCTCATTTGTCAAACTGGGCAT
TGAAAATTGATATTGTTGTGATTCAATGTCAAAAAAAAAAAAAAAAAAAA
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