CX294928

Overview
NameCX294928
Unique NameCX294928
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15117 contig Ccv1_Contig15117:95..757. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294928 vs. ExPASy Swiss-Prot
Match: SSM1_YEAST (Protein SSM1 OS=Saccharomyces cerevisiae GN=SSM1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.211e-16
Identity = 65/197 (32.99%), Postives = 103/197 (52.28%), Query Frame = 1
Query:   34 FDLDDTLYPSETGIAEAVKRNIEGFLIEKCGFSETKASSLRVELFKAYGSTLAGLRALGYDIGADDYHGFVHGRLPY-DLIKPDPQLRNLLCSITQR-KI----IFTNSDRNHAITCLKRLEIADCFDQIICFETMNPNLSKATRPDEFPVLLKPSMDAMKLALHVANVDP-RHALFLDDNIKNVTAGQALGLRTVL 603
            FD+D+ LY S T I + ++++I  F       S   A  L    +K YG  + GL  + + + A +Y+  V   LP  D++KPD  LRN+L  + Q  KI    +FTN+ +NHAI CL+ L IAD FD +             +R D   ++ KP + A + A+  + +    +A F+DD+ KN+  G  LG++T +
Sbjct:   60 FDIDNCLYKSSTRIHDLMQQSILRFFQTHLKLSPEDAHVLNNSYYKEYGLAIRGL-VMFHKVNALEYNRLVDDSLPLQDILKPDIPLRNMLLRLRQSGKIDKLWLFTNAYKNHAIRCLRLLGIADLFDGL--------TYCDYSRTD--TLVCKPHVKAFEKAMKESGLARYENAYFIDDSGKNIETGIKLGMKTCI 245          
BLAST of CX294928 vs. ExPASy Swiss-Prot
Match: PHM8_YEAST (Phosphate metabolism protein 8 OS=Saccharomyces cerevisiae GN=PHM8 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.581e-16
Identity = 61/199 (30.65%), Postives = 99/199 (49.75%), Query Frame = 1
Query:   34 FDLDDTLYPSETGIAEAVKRNIEGFLIEKCGFSETKASSLRVELFKAYGSTLAGLRALGYDIGADDYHGFVHGRLPY-DLIKPDPQLRNLLCSITQRKI-------IFTNSDRNHAITCLKRLEIADCFDQIICFETMNPNLSKATRPDEFPVLLKPSMDAMKLALHVANVDP-RHALFLDDNIKNVTAGQALGLRTVL 603
            FD+D+TLY   T +   +++++  F   + GF + +A  L    ++ YG ++ GL           Y+ F+   LP  D +KPD +LR LL ++ ++K+       +FTNS +NHAI C+K L IAD FD I              RP E   + KP     + A   + +    +A F+DDN  NV +  ++G+  V+
Sbjct:   57 FDIDNTLYRKSTKVQLLMQQSLSNFFKYELGFDDDEAERLIESYYQEYGLSVKGLIKNKQIDDVLQYNTFIDDSLPLQDYLKPDWKLRELLINLKKKKLGKFDKLWLFTNSYKNHAIRCVKILGIADLFDGI--------TYCHYDRPIEEEFICKPDPKFFETAKLQSGLSSFANAWFIDDNESNVRSALSMGMGHVI 247          
BLAST of CX294928 vs. ExPASy Swiss-Prot
Match: YAI5_SCHPO (Uncharacterized protein C24B11.05 OS=Schizosaccharomyces pombe GN=SPAC24B11.05 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.809e-12
Identity = 59/191 (30.89%), Postives = 87/191 (45.55%), Query Frame = 1
Query:   28 LVFDLDDTLYPSETGIAEAVKRNIEGFLIEKCGFSETKASSLRVELFKAYGSTLAGLRALGYDIGADDYHGFVHGRLPYD-LIKPDPQLRNLLCSITQRK--IIFTNSDRNHAITCLKRLEIADCFDQIICFETMNPNLSKATRPDEFPVLLKPSMDAMKLALHVANV-DPRHALFLDDNIKNVTAGQALG 588
            + FDLD+ LYP    I   +   I  F  +K G    +A  LR   ++ YG  + GL  L ++I A DY   V   LP + +IK D  LR +L  + ++    IFTN+   HA   LK L I DCFD I   +    +L           + KP  +  +  +  A V D    +F+DD+  N+   +  G
Sbjct:    8 IFFDLDNCLYPKSYKIHNMMAARITAFFSDKLGIPTEEAERLREVYYRHYGIAIRGL-VLHHEIDAVDYDQRVDQSLPLEKVIKKDEVLREMLLELRKKYKCWIFTNAYIVHANRVLKYLGIEDCFDGITYCDYNAKDL-----------IAKPMPEMYERVMREAGVTDKDKCIFVDDSYGNILGAREFG 186          
The following BLAST results are available for this feature:
BLAST of CX294928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SSM1_YEAST1.211e-1632.99Protein SSM1 OS=Saccharomyces cerevisiae GN=SSM1 P... [more]
PHM8_YEAST1.581e-1630.65Phosphate metabolism protein 8 OS=Saccharomyces ce... [more]
YAI5_SCHPO1.809e-1230.89Uncharacterized protein C24B11.05 OS=Schizosacchar... [more]
back to top
Properties
Property NameValue
Genbank descriptionC05057F07SK PhIFruit1 Citrus clementina cDNA clone C05057F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294928 ID=CX294928; Name=CX294928; organism=Citrus clementina; type=EST; length=663bp
GAAGCCATGGATTCTCCCTTCAACTGCCTCGTTTTTGATTTGGATGACAC
TTTGTACCCTTCAGAAACTGGAATAGCTGAAGCTGTCAAGAGAAATATTG
AAGGATTTCTTATTGAGAAATGCGGATTCTCAGAAACCAAAGCTTCAAGT
CTCAGAGTTGAGCTTTTCAAAGCTTACGGCAGCACCCTCGCTGGCTTGCG
AGCTCTAGGCTATGATATTGGTGCCGATGATTACCACGGTTTCGTGCACG
GAAGATTGCCGTATGATTTGATCAAACCAGATCCTCAACTACGCAACCTC
TTATGCAGCATCACCCAGAGAAAGATTATTTTCACCAATTCGGACAGGAA
CCATGCAATTACATGTCTGAAACGACTAGAAATAGCAGATTGTTTCGATC
AAATAATCTGTTTCGAGACAATGAACCCGAATCTCTCGAAAGCAACTCGT
CCCGATGAATTCCCCGTCCTTTTGAAGCCTTCAATGGACGCCATGAAACT
CGCCCTCCATGTTGCTAATGTTGATCCTCGTCACGCCTTGTTTCTTGACG
ACAACATTAAAAATGTCACCGCCGGGCAGGCTTTAGGACTACGCACCGTT
TTGGTTGGGAAGACGGTGAAACGTCGTGAAAGCGATATGCATTAGAGATG
TCAATACTTACCT
back to top