CX294936

Overview
NameCX294936
Unique NameCX294936
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length607
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294936 vs. ExPASy Swiss-Prot
Match: GMS1_SCHPO (UDP-galactose transporter OS=Schizosaccharomyces pombe GN=gms1 PE=2 SV=3)

HSP 1 Score: 65.855 bits (159), Expect = 2.040e-15
Identity = 35/119 (29.41%), Postives = 65/119 (54.62%), Query Frame = 3
Query:  204 MFRLLLDDFRGGFEKGPWWQRLFDGYNITTWMVVFNLGSTGLLVSWLMKYADNIIKVYSTSMAMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAP-----PGMLVDIPSTAKAA 545
            +F +L+ D+    E G      F GYN   W+ +      G++V+  + +ADNI+K +STS++++++ + SVYL +FK +L   +G+++ + +  +Y  P     P     IP T + A
Sbjct:  231 LFTILMKDYHNIAENG-----FFFGYNSIVWLAILLQAGGGIIVALCVAFADNIMKNFSTSISIIISSLASVYLMDFKISLTFLIGVMLVIAATFLYTKPESKPSPSRGTYIPMTTQDA 344          

HSP 2 Score: 36.965 bits (84), Expect = 2.040e-15
Identity = 17/40 (42.50%), Postives = 27/40 (67.50%), Query Frame = 2
Query:   56 PIQGYLLGVLSACLSALAGVYTEFLMKKNNDSLYWQNVQL 175
            P+ G+   +++  +S LAGVY E ++K  N SL+ +NVQL
Sbjct:  183 PVTGFSAVLVACLISGLAGVYFEKVLKDTNPSLWVRNVQL 222          
BLAST of CX294936 vs. ExPASy Swiss-Prot
Match: S35A3_CANFA (UDP-N-acetylglucosamine transporter OS=Canis familiaris GN=SLC35A3 PE=2 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 3.646e-14
Identity = 37/108 (34.26%), Postives = 64/108 (59.26%), Query Frame = 3
Query:  186 FGAIFNMFRLLLDDFRGGFEKGPWWQRLFDGYNITTWMVVFNLGSTGLLVSWLMKYADNIIKVYSTSMAMLLTMVLSVY-LFNFKPTLQLFLGIIICMMSLHMYFAPP 506
            FG+IF +  + + D     + G      F GYN  TW+VV      GL+++ ++KYADNI+K ++TS++++L+ ++S + L +F PT   FLG I+ + +  +Y   P
Sbjct:  215 FGSIFGLMGVYIYDGELVSKNG-----FFQGYNRLTWIVVILQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTSVFFLGAILVITATFLYGYDP 317          

HSP 2 Score: 33.4982 bits (75), Expect = 3.646e-14
Identity = 16/36 (44.44%), Postives = 26/36 (72.22%), Query Frame = 2
Query:   71 LLGVLSACLSA-LAGVYTEFLMKKNNDSLYWQNVQL 175
            L+ VL+AC S+  AGVY E ++K+   S++ +N+QL
Sbjct:  177 LMAVLTACFSSGFAGVYFEKILKETKQSVWIRNIQL 212          
BLAST of CX294936 vs. ExPASy Swiss-Prot
Match: S35A3_MOUSE (UDP-N-acetylglucosamine transporter OS=Mus musculus GN=Slc35a3 PE=2 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 4.737e-14
Identity = 37/108 (34.26%), Postives = 64/108 (59.26%), Query Frame = 3
Query:  186 FGAIFNMFRLLLDDFRGGFEKGPWWQRLFDGYNITTWMVVFNLGSTGLLVSWLMKYADNIIKVYSTSMAMLLTMVLSVY-LFNFKPTLQLFLGIIICMMSLHMYFAPP 506
            FG+IF +  + + D     + G      F GYN  TW+VV      GL+++ ++KYADNI+K ++TS++++L+ ++S + L +F PT   FLG I+ + +  +Y   P
Sbjct:  215 FGSIFGLMGVYVYDGELVSKNG-----FFQGYNQLTWIVVALQALGGLVIAAVIKYADNILKGFATSLSIILSTIISYFWLQDFVPTSVFFLGAILVIAATFLYGYDP 317          

HSP 2 Score: 33.4982 bits (75), Expect = 4.737e-14
Identity = 16/36 (44.44%), Postives = 26/36 (72.22%), Query Frame = 2
Query:   71 LLGVLSACLSA-LAGVYTEFLMKKNNDSLYWQNVQL 175
            L+ VL+AC S+  AGVY E ++K+   S++ +N+QL
Sbjct:  177 LMAVLTACFSSGFAGVYFEKILKETKQSVWIRNIQL 212          
BLAST of CX294936 vs. ExPASy Swiss-Prot
Match: S35A3_HUMAN (UDP-N-acetylglucosamine transporter OS=Homo sapiens GN=SLC35A3 PE=2 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 4.737e-14
Identity = 37/108 (34.26%), Postives = 64/108 (59.26%), Query Frame = 3
Query:  186 FGAIFNMFRLLLDDFRGGFEKGPWWQRLFDGYNITTWMVVFNLGSTGLLVSWLMKYADNIIKVYSTSMAMLLTMVLSVY-LFNFKPTLQLFLGIIICMMSLHMYFAPP 506
            FG+IF +  + + D     + G      F GYN  TW+VV      GL+++ ++KYADNI+K ++TS++++L+ ++S + L +F PT   FLG I+ + +  +Y   P
Sbjct:  214 FGSIFGLMGVYIYDGELVSKNG-----FFQGYNRLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTSVFFLGAILVITATFLYGYDP 316          

HSP 2 Score: 33.4982 bits (75), Expect = 4.737e-14
Identity = 16/36 (44.44%), Postives = 26/36 (72.22%), Query Frame = 2
Query:   71 LLGVLSACLSA-LAGVYTEFLMKKNNDSLYWQNVQL 175
            L+ VL+AC S+  AGVY E ++K+   S++ +N+QL
Sbjct:  176 LMAVLTACFSSGFAGVYFEKILKETKQSVWIRNIQL 211          
BLAST of CX294936 vs. ExPASy Swiss-Prot
Match: S35A3_BOVIN (UDP-N-acetylglucosamine transporter OS=Bos taurus GN=SLC35A3 PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 6.155e-14
Identity = 37/108 (34.26%), Postives = 64/108 (59.26%), Query Frame = 3
Query:  186 FGAIFNMFRLLLDDFRGGFEKGPWWQRLFDGYNITTWMVVFNLGSTGLLVSWLMKYADNIIKVYSTSMAMLLTMVLSVY-LFNFKPTLQLFLGIIICMMSLHMYFAPP 506
            FG+IF +  + + D     + G      F GYN  TW+VV      GL+++ ++KYADNI+K ++TS++++L+ ++S + L +F PT   FLG I+ + +  +Y   P
Sbjct:  215 FGSIFGLMGVYVYDGELVSKNG-----FFQGYNRLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTSVFFLGAILVITATFLYGYDP 317          

HSP 2 Score: 33.4982 bits (75), Expect = 6.155e-14
Identity = 16/36 (44.44%), Postives = 26/36 (72.22%), Query Frame = 2
Query:   71 LLGVLSACLSA-LAGVYTEFLMKKNNDSLYWQNVQL 175
            L+ VL+AC S+  AGVY E ++K+   S++ +N+QL
Sbjct:  177 LMAVLTACFSSGFAGVYFEKILKETKQSVWIRNIQL 212          
BLAST of CX294936 vs. ExPASy Swiss-Prot
Match: S35A2_MOUSE (UDP-galactose translocator OS=Mus musculus GN=Slc35a2 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.954e-14
Identity = 38/108 (35.19%), Postives = 59/108 (54.63%), Query Frame = 3
Query:  249 GPWW--------QRLFDGYNITTWMVVFNLGSTGLLVSWLMKYADNIIKVYSTSMAMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPPGMLVDIPSTAKAAP 548
            G WW        Q  F GY    W VV N    GLLV+ ++KYADNI+K ++TS++++L+ V S+ LF F       LG  + + ++++Y  P G +  I S + + P
Sbjct:  249 GLWWAEGTAVASQGFFFGYTPAVWGVVLNQAFGGLLVAVVVKYADNILKGFATSLSIVLSTVASIRLFGFHLDPLFALGAGLVIGAVYLYSLPRGAVKAIASASASGP 356          

HSP 2 Score: 30.4166 bits (67), Expect = 7.954e-14
Identity = 15/36 (41.67%), Postives = 27/36 (75.00%), Query Frame = 2
Query:   71 LLGVLSACLSA-LAGVYTEFLMKKNNDSLYWQNVQL 175
            L  V+++CLS+  AGVY E ++K ++ S++ +N+QL
Sbjct:  203 LAAVVASCLSSGFAGVYFEKILKGSSGSVWLRNLQL 238          
BLAST of CX294936 vs. ExPASy Swiss-Prot
Match: S35A3_RAT (UDP-N-acetylglucosamine transporter OS=Rattus norvegicus GN=Slc35a3 PE=2 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 7.996e-14
Identity = 37/108 (34.26%), Postives = 64/108 (59.26%), Query Frame = 3
Query:  186 FGAIFNMFRLLLDDFRGGFEKGPWWQRLFDGYNITTWMVVFNLGSTGLLVSWLMKYADNIIKVYSTSMAMLLTMVLSVY-LFNFKPTLQLFLGIIICMMSLHMYFAPP 506
            FG+IF +  + + D     + G      F GYN  TW+VV      GL+++ ++KYADNI+K ++TS++++L+ ++S + L +F PT   FLG I+ + +  +Y   P
Sbjct:  215 FGSIFGLMGVYVYDGELVSKNG-----FFQGYNQLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTIISYFWLQDFVPTSVFFLGAILVIAATFLYGYDP 317          

HSP 2 Score: 32.3426 bits (72), Expect = 7.996e-14
Identity = 16/36 (44.44%), Postives = 25/36 (69.44%), Query Frame = 2
Query:   71 LLGVLSACLSA-LAGVYTEFLMKKNNDSLYWQNVQL 175
            L+ VL AC S+  AGVY E ++K+   S++ +N+QL
Sbjct:  177 LMAVLIACFSSGFAGVYFEKILKETKQSVWIRNIQL 212          
BLAST of CX294936 vs. ExPASy Swiss-Prot
Match: SRF3_CAEEL (UDP-galactose/UDP-N-acetylglucosamine transporter srf-3 OS=Caenorhabditis elegans GN=srf-3 PE=1 SV=4)

HSP 1 Score: 63.5438 bits (153), Expect = 1.038e-13
Identity = 34/99 (34.34%), Postives = 58/99 (58.59%), Query Frame = 3
Query:  267 LFDGYNITTWMVVFNLGSTGLLVSWLMKYADNIIKVYSTSMAMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPPGMLV-------DIPSTAKA 542
            L  G++   W+ V   G  GL V+  +KYADNI K ++TS+A++L+ + S++LF+F P+    LG  + + S+ +Y +   M+        +IPST +A
Sbjct:  227 LLYGFDSIVWLTVLWYGVGGLSVAVCIKYADNIAKNFATSVAIILSTIGSIFLFDFIPSFTFLLGASLVIFSIFLYSSHQSMVAALGRLRGEIPSTKEA 325          

HSP 2 Score: 33.4982 bits (75), Expect = 1.038e-13
Identity = 16/42 (38.10%), Postives = 28/42 (66.67%), Query Frame = 2
Query:   53 APIQGYLLGVLSACLSALAGVYTEFLMKKNND-SLYWQNVQL 175
            +P  G++  V++ CLS  AG+Y E ++K +   SL+ +NVQ+
Sbjct:  161 SPFVGFVAVVVACCLSGFAGIYFEKILKGSAPVSLWMRNVQM 202          
BLAST of CX294936 vs. ExPASy Swiss-Prot
Match: S35A2_CANFA (UDP-galactose translocator OS=Canis familiaris GN=SLC35A2 PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 1.341e-13
Identity = 39/110 (35.45%), Postives = 59/110 (53.64%), Query Frame = 3
Query:  249 GPWWQR--------LFDGYNITTWMVVFNLGSTGLLVSWLMKYADNIIKVYSTSMAMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPPGMLVDIPSTAKAAPDS 554
            G WW           F GY    W VV N    GLLV+ ++KYADNI+K ++TS++++L+ V S+ LF F       LG  + + ++++Y  P G    I ST+ +A  S
Sbjct:  249 GLWWAEGTAVARRGFFFGYTPAVWGVVLNQAFGGLLVAVVVKYADNILKGFATSLSIVLSTVASIRLFGFHVDPLFALGAGLVIGAVYLYSLPRGTAKAIASTSASASAS 358          

HSP 2 Score: 30.4166 bits (67), Expect = 1.341e-13
Identity = 15/36 (41.67%), Postives = 27/36 (75.00%), Query Frame = 2
Query:   71 LLGVLSACLSA-LAGVYTEFLMKKNNDSLYWQNVQL 175
            L  V+++CLS+  AGVY E ++K ++ S++ +N+QL
Sbjct:  203 LAAVVASCLSSGFAGVYFEKILKGSSGSVWLRNLQL 238          
BLAST of CX294936 vs. ExPASy Swiss-Prot
Match: S35A2_HUMAN (UDP-galactose translocator OS=Homo sapiens GN=SLC35A2 PE=1 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 6.443e-13
Identity = 37/107 (34.58%), Postives = 57/107 (53.27%), Query Frame = 3
Query:  249 GPWWQR--------LFDGYNITTWMVVFNLGSTGLLVSWLMKYADNIIKVYSTSMAMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPPGMLVDIPSTAKAA 545
            G WW           F GY    W VV N    GLLV+ ++KYADNI+K ++TS++++L+ V S+ LF F       LG  + + ++++Y  P G    I S + +A
Sbjct:  249 GLWWAEGTAVATRGFFFGYTPAVWGVVLNQAFGGLLVAVVVKYADNILKGFATSLSIVLSTVASIRLFGFHVDPLFALGAGLVIGAVYLYSLPRGAAKAIASASASA 355          

HSP 2 Score: 30.4166 bits (67), Expect = 6.443e-13
Identity = 15/36 (41.67%), Postives = 27/36 (75.00%), Query Frame = 2
Query:   71 LLGVLSACLSA-LAGVYTEFLMKKNNDSLYWQNVQL 175
            L  V+++CLS+  AGVY E ++K ++ S++ +N+QL
Sbjct:  203 LAAVVASCLSSGFAGVYFEKILKGSSGSVWLRNLQL 238          
The following BLAST results are available for this feature:
BLAST of CX294936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
GMS1_SCHPO2.040e-1529.41UDP-galactose transporter OS=Schizosaccharomyces p... [more]
S35A3_CANFA3.646e-1434.26UDP-N-acetylglucosamine transporter OS=Canis famil... [more]
S35A3_MOUSE4.737e-1434.26UDP-N-acetylglucosamine transporter OS=Mus musculu... [more]
S35A3_HUMAN4.737e-1434.26UDP-N-acetylglucosamine transporter OS=Homo sapien... [more]
S35A3_BOVIN6.155e-1434.26UDP-N-acetylglucosamine transporter OS=Bos taurus ... [more]
S35A2_MOUSE7.954e-1435.19UDP-galactose translocator OS=Mus musculus GN=Slc3... [more]
S35A3_RAT7.996e-1434.26UDP-N-acetylglucosamine transporter OS=Rattus norv... [more]
SRF3_CAEEL1.038e-1334.34UDP-galactose/UDP-N-acetylglucosamine transporter ... [more]
S35A2_CANFA1.341e-1335.45UDP-galactose translocator OS=Canis familiaris GN=... [more]
S35A2_HUMAN6.443e-1334.58UDP-galactose translocator OS=Homo sapiens GN=SLC3... [more]

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Properties
Property NameValue
Genbank descriptionC05057G09SK PhIFruit1 Citrus clementina cDNA clone C05057G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294936 ID=CX294936; Name=CX294936; organism=Citrus clementina; type=EST; length=607bp
ATTGTTTTAGGTTAAAGGTTGTGGAGAAGCTTTATGTGACTCTCTATTTG
CAGCACCAATCCAAGGATATCTGTTGGGAGTTCTATCTGCTTGTCTATCG
GCACTAGCAGGTGTCTACACAGAGTTTCTGATGAAGAAGAATAATGACAG
CTTGTACTGGCAGAATGTACAATTATATACGTAGGTTTGGCGCAATTTTT
AATATGTTCCGGCTGCTACTGGATGATTTTAGAGGAGGATTTGAGAAAGG
ACCTTGGTGGCAACGCCTTTTTGATGGATATAACATTACAACTTGGATGG
TTGTTTTCAATCTTGGATCCACTGGCTTGTTGGTTTCATGGTTGATGAAA
TATGCTGACAATATCATAAAGGTTTATTCCACATCAATGGCAATGTTGCT
AACAATGGTTTTATCTGTTTACCTTTTCAATTTTAAGCCTACACTGCAGC
TATTCTTGGGTATTATTATCTGTATGATGTCATTGCACATGTATTTTGCT
CCACCTGGCATGCTTGTGGATATACCGTCAACTGCGAAAGCGGCACCTGA
TAGTCTAAGAGAAGTTTCTGTTGAACGAAGAACAGATTCCTGACTTTTTT
TCAAGGT
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