CX294939
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RK1_PEA (50S ribosomal protein L1, chloroplastic (Fragment) OS=Pisum sativum GN=RPL1 PE=2 SV=1) HSP 1 Score: 177.563 bits (449), Expect = 1.221e-58 Identity = 89/105 (84.76%), Postives = 95/105 (90.48%), Query Frame = 2 Query: 197 DRTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ*K 511 DR RSKRFLEIQ LRE KKEYDLKTAISL+K+ + TKF ET EAHFRLNIDPKYNDQQLRATVSLPKGTGK +KVAVL QGE+FDEAKNAGADLVGG+DLIEQ K Sbjct: 53 DRVRSKRFLEIQKLRELKKEYDLKTAISLVKETAKTKFVETVEAHFRLNIDPKYNDQQLRATVSLPKGTGKPIKVAVLTQGERFDEAKNAGADLVGGEDLIEQIK 157 HSP 2 Score: 70.4774 bits (171), Expect = 1.221e-58 Identity = 34/35 (97.14%), Postives = 34/35 (97.14%), Query Frame = 1 Query: 505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609 IKGGFMEFDKLIASPDMM KVASLGKILGPRGLMP Sbjct: 156 IKGGFMEFDKLIASPDMMPKVASLGKILGPRGLMP 190
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RK1_SPIOL (50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea GN=RPL1 PE=1 SV=1) HSP 1 Score: 179.874 bits (455), Expect = 1.321e-57 Identity = 90/105 (85.71%), Postives = 99/105 (94.29%), Query Frame = 2 Query: 197 DRTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ*K 511 DRTRSKRFLEIQ LRE K+EYDLKTA+SL+KQMSSTKF ETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK+VK+AVLAQG+K DEAK AGAD+VGG++LIEQ K Sbjct: 115 DRTRSKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIK 219 HSP 2 Score: 64.6994 bits (156), Expect = 1.321e-57 Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 1 Query: 505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609 IKGGFM+FDKLIA+ DMM KVASLG+ILGPRGLMP Sbjct: 218 IKGGFMDFDKLIATSDMMAKVASLGRILGPRGLMP 252
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RK1_ARATH (50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana GN=RPL1 PE=1 SV=1) HSP 1 Score: 172.17 bits (435), Expect = 2.927e-57 Identity = 87/106 (82.08%), Postives = 96/106 (90.57%), Query Frame = 2 Query: 194 RDRTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ*K 511 RDRTRSKRFLEIQ LRE KKEYD+ TAISLLKQ ++T+F E+ EAHFRLNIDPKYNDQQLRATVSLPKGTG++V VAVLAQGEK DEAK+AGAD+VG DDLIEQ K Sbjct: 108 RDRTRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQLRATVSLPKGTGQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIK 213 HSP 2 Score: 71.2478 bits (173), Expect = 2.927e-57 Identity = 34/35 (97.14%), Postives = 34/35 (97.14%), Query Frame = 1 Query: 505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609 IKGGFMEFDKLIASPDMMVKVA LGKILGPRGLMP Sbjct: 212 IKGGFMEFDKLIASPDMMVKVAGLGKILGPRGLMP 246
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_CYAP8 (50S ribosomal protein L1 OS=Cyanothece sp. (strain PCC 8801) GN=rplA PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 1.028e-34 Identity = 58/99 (58.59%), Postives = 73/99 (73.74%), Query Frame = 2 Query: 209 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ 505 SKRF E + + Y A+ LLK+ ++ KF E+AEAH RL IDPKY DQQLR TVSLPKGTG+ V+VAV+A+GEK EA NAGAD+VG ++LIE+ Sbjct: 6 SKRFKEALAKVDQNQTYAPLEALQLLKETATAKFNESAEAHIRLGIDPKYTDQQLRTTVSLPKGTGQEVRVAVIARGEKVQEANNAGADIVGSEELIEE 104 HSP 2 Score: 52.373 bits (124), Expect = 1.028e-34 Identity = 23/32 (71.88%), Postives = 28/32 (87.50%), Query Frame = 1 Query: 514 GFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609 G M+F+ LIA+PDMM KVA LG++LGPRGLMP Sbjct: 108 GMMDFEVLIATPDMMPKVAKLGRLLGPRGLMP 139
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RK1_GRATL (50S ribosomal protein L1, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=rpl1 PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.745e-34 Identity = 55/105 (52.38%), Postives = 74/105 (70.48%), Query Frame = 2 Query: 200 RTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ*KE 514 + RS+RF + E K Y A++L+K +S+ KF ETAE H L +DPKY DQQLR TV LPKGTGK ++VAV+ Q K EAK++GAD+VGG+DLI++ K+ Sbjct: 2 KKRSRRFSTLLKQIEADKLYSPLDALNLMKNLSNVKFIETAEVHIVLGLDPKYADQQLRTTVMLPKGTGKIMRVAVITQNNKTHEAKSSGADIVGGEDLIDEIKK 106 HSP 2 Score: 56.6102 bits (135), Expect = 1.745e-34 Identity = 25/35 (71.43%), Postives = 31/35 (88.57%), Query Frame = 1 Query: 505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609 IK G ++FDKLIA+PDMM+ +A LGKILGP+GLMP Sbjct: 104 IKKGRLDFDKLIATPDMMMSIAKLGKILGPKGLMP 138
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_MICAN (50S ribosomal protein L1 OS=Microcystis aeruginosa (strain NIES-843) GN=rplA PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.273e-34 Identity = 58/99 (58.59%), Postives = 76/99 (76.77%), Query Frame = 2 Query: 209 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ 505 S+R + Q E K Y+ A++LLK++++ KF ETAEAH RL IDPKY DQQLR TVSLPKGTG++V+VAV+ +GEK EA NAGAD+VG ++LIE+ Sbjct: 6 SRRLRDAQAKVENKA-YEPLEALTLLKELATAKFDETAEAHIRLGIDPKYTDQQLRTTVSLPKGTGRTVRVAVITRGEKVQEANNAGADIVGSEELIEE 103 HSP 2 Score: 50.8322 bits (120), Expect = 2.273e-34 Identity = 24/35 (68.57%), Postives = 28/35 (80.00%), Query Frame = 1 Query: 505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609 I G M+F+ LIA+PDMM KVA LG+ LGPRGLMP Sbjct: 104 IAKGMMDFEVLIATPDMMPKVAKLGRQLGPRGLMP 138
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_TRIEI (50S ribosomal protein L1 OS=Trichodesmium erythraeum (strain IMS101) GN=rplA PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 3.856e-34 Identity = 55/99 (55.56%), Postives = 76/99 (76.77%), Query Frame = 2 Query: 209 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ 505 S+R E++ E ++ Y+ K A+ LLK+ ++ KF E AEAH RL IDPKY DQQLR TV+LPKGTG+++++AV+A+GEK +EA AGADL G ++LIEQ Sbjct: 6 SRRLQELRKKVE-ERPYEPKEALQLLKETATAKFLEAAEAHVRLGIDPKYTDQQLRTTVALPKGTGQTIRIAVIAKGEKVNEALAAGADLAGSEELIEQ 103 HSP 2 Score: 54.299 bits (129), Expect = 3.856e-34 Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 1 Query: 505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609 I G MEFD+LIA+PD+M +VA LG++LGPRGLMP Sbjct: 104 ISKGMMEFDRLIATPDVMPQVAKLGRLLGPRGLMP 138
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_CYAP7 (50S ribosomal protein L1 OS=Cyanothece sp. (strain PCC 7424) GN=rplA PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 5.022e-34 Identity = 54/99 (54.55%), Postives = 74/99 (74.75%), Query Frame = 2 Query: 209 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ 505 S+RF E + K Y+ A++LLK+ ++ KF ETAE H RL IDPKY DQQLR TV+ PKGTG++V+VAV+A+GEK EA +AGAD+VG ++LI++ Sbjct: 6 SRRFKEALAKVDQDKAYEPLEALNLLKETATAKFDETAEVHVRLGIDPKYTDQQLRTTVTFPKGTGQTVRVAVIARGEKVQEASSAGADIVGSEELIDE 104 HSP 2 Score: 54.299 bits (129), Expect = 5.022e-34 Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 1 Query: 505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609 I+ G M+F+ LIA+PDMM KVA LG++LGPRGLMP Sbjct: 105 IQNGMMDFEVLIATPDMMPKVAKLGRLLGPRGLMP 139
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_ANAVT (50S ribosomal protein L1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplA PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 5.022e-34 Identity = 57/99 (57.58%), Postives = 74/99 (74.75%), Query Frame = 2 Query: 209 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ 505 S+R E+Q E + EY A+SLLK+ ++ KF E AEAH RL IDPKY DQQLR TV+LPKGTG+ V+VAV+A+GEK EA NAGAD+ G ++LI++ Sbjct: 6 SRRLRELQAKVEDR-EYGPLDALSLLKETATAKFAEAAEAHIRLGIDPKYTDQQLRTTVALPKGTGQIVRVAVIARGEKVTEASNAGADVFGSEELIDE 103 HSP 2 Score: 54.299 bits (129), Expect = 5.022e-34 Identity = 25/35 (71.43%), Postives = 31/35 (88.57%), Query Frame = 1 Query: 505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609 I+ G M+FDKLIA+PD+M +VA LGK+LGPRGLMP Sbjct: 104 IQKGRMDFDKLIATPDVMPQVAKLGKMLGPRGLMP 138
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_ANASP (50S ribosomal protein L1 OS=Anabaena sp. (strain PCC 7120) GN=rplA PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 6.541e-34 Identity = 57/99 (57.58%), Postives = 74/99 (74.75%), Query Frame = 2 Query: 209 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ 505 S+R E+Q E + EY A+ LLK+ ++ KF E AEAH RL IDPKY DQQLR TV+LPKGTG+ V+VAV+A+GEK EA NAGAD+VG ++LI++ Sbjct: 6 SRRLRELQAKVEDR-EYGPLDALGLLKETATAKFGEAAEAHIRLGIDPKYTDQQLRTTVALPKGTGQIVRVAVIARGEKVTEASNAGADVVGSEELIDE 103 HSP 2 Score: 54.299 bits (129), Expect = 6.541e-34 Identity = 25/35 (71.43%), Postives = 31/35 (88.57%), Query Frame = 1 Query: 505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609 I+ G M+FDKLIA+PD+M +VA LGK+LGPRGLMP Sbjct: 104 IQKGRMDFDKLIATPDVMPQVAKLGKMLGPRGLMP 138 The following BLAST results are available for this feature:
BLAST of CX294939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX294939 ID=CX294939; Name=CX294939; organism=Citrus clementina; type=EST; length=609bpback to top |