CX294939

Overview
NameCX294939
Unique NameCX294939
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length609
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15033 contig Ccv1_Contig15033:319..928. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RK1_PEA (50S ribosomal protein L1, chloroplastic (Fragment) OS=Pisum sativum GN=RPL1 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.221e-58
Identity = 89/105 (84.76%), Postives = 95/105 (90.48%), Query Frame = 2
Query:  197 DRTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ*K 511
            DR RSKRFLEIQ LRE KKEYDLKTAISL+K+ + TKF ET EAHFRLNIDPKYNDQQLRATVSLPKGTGK +KVAVL QGE+FDEAKNAGADLVGG+DLIEQ K
Sbjct:   53 DRVRSKRFLEIQKLRELKKEYDLKTAISLVKETAKTKFVETVEAHFRLNIDPKYNDQQLRATVSLPKGTGKPIKVAVLTQGERFDEAKNAGADLVGGEDLIEQIK 157          

HSP 2 Score: 70.4774 bits (171), Expect = 1.221e-58
Identity = 34/35 (97.14%), Postives = 34/35 (97.14%), Query Frame = 1
Query:  505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            IKGGFMEFDKLIASPDMM KVASLGKILGPRGLMP
Sbjct:  156 IKGGFMEFDKLIASPDMMPKVASLGKILGPRGLMP 190          
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RK1_SPIOL (50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea GN=RPL1 PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.321e-57
Identity = 90/105 (85.71%), Postives = 99/105 (94.29%), Query Frame = 2
Query:  197 DRTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ*K 511
            DRTRSKRFLEIQ LRE K+EYDLKTA+SL+KQMSSTKF ETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK+VK+AVLAQG+K DEAK AGAD+VGG++LIEQ K
Sbjct:  115 DRTRSKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIK 219          

HSP 2 Score: 64.6994 bits (156), Expect = 1.321e-57
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 1
Query:  505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            IKGGFM+FDKLIA+ DMM KVASLG+ILGPRGLMP
Sbjct:  218 IKGGFMDFDKLIATSDMMAKVASLGRILGPRGLMP 252          
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RK1_ARATH (50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana GN=RPL1 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.927e-57
Identity = 87/106 (82.08%), Postives = 96/106 (90.57%), Query Frame = 2
Query:  194 RDRTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ*K 511
            RDRTRSKRFLEIQ LRE KKEYD+ TAISLLKQ ++T+F E+ EAHFRLNIDPKYNDQQLRATVSLPKGTG++V VAVLAQGEK DEAK+AGAD+VG DDLIEQ K
Sbjct:  108 RDRTRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQLRATVSLPKGTGQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIK 213          

HSP 2 Score: 71.2478 bits (173), Expect = 2.927e-57
Identity = 34/35 (97.14%), Postives = 34/35 (97.14%), Query Frame = 1
Query:  505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            IKGGFMEFDKLIASPDMMVKVA LGKILGPRGLMP
Sbjct:  212 IKGGFMEFDKLIASPDMMVKVAGLGKILGPRGLMP 246          
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_CYAP8 (50S ribosomal protein L1 OS=Cyanothece sp. (strain PCC 8801) GN=rplA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.028e-34
Identity = 58/99 (58.59%), Postives = 73/99 (73.74%), Query Frame = 2
Query:  209 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ 505
            SKRF E     +  + Y    A+ LLK+ ++ KF E+AEAH RL IDPKY DQQLR TVSLPKGTG+ V+VAV+A+GEK  EA NAGAD+VG ++LIE+
Sbjct:    6 SKRFKEALAKVDQNQTYAPLEALQLLKETATAKFNESAEAHIRLGIDPKYTDQQLRTTVSLPKGTGQEVRVAVIARGEKVQEANNAGADIVGSEELIEE 104          

HSP 2 Score: 52.373 bits (124), Expect = 1.028e-34
Identity = 23/32 (71.88%), Postives = 28/32 (87.50%), Query Frame = 1
Query:  514 GFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            G M+F+ LIA+PDMM KVA LG++LGPRGLMP
Sbjct:  108 GMMDFEVLIATPDMMPKVAKLGRLLGPRGLMP 139          
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RK1_GRATL (50S ribosomal protein L1, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=rpl1 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.745e-34
Identity = 55/105 (52.38%), Postives = 74/105 (70.48%), Query Frame = 2
Query:  200 RTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ*KE 514
            + RS+RF  +    E  K Y    A++L+K +S+ KF ETAE H  L +DPKY DQQLR TV LPKGTGK ++VAV+ Q  K  EAK++GAD+VGG+DLI++ K+
Sbjct:    2 KKRSRRFSTLLKQIEADKLYSPLDALNLMKNLSNVKFIETAEVHIVLGLDPKYADQQLRTTVMLPKGTGKIMRVAVITQNNKTHEAKSSGADIVGGEDLIDEIKK 106          

HSP 2 Score: 56.6102 bits (135), Expect = 1.745e-34
Identity = 25/35 (71.43%), Postives = 31/35 (88.57%), Query Frame = 1
Query:  505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            IK G ++FDKLIA+PDMM+ +A LGKILGP+GLMP
Sbjct:  104 IKKGRLDFDKLIATPDMMMSIAKLGKILGPKGLMP 138          
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_MICAN (50S ribosomal protein L1 OS=Microcystis aeruginosa (strain NIES-843) GN=rplA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.273e-34
Identity = 58/99 (58.59%), Postives = 76/99 (76.77%), Query Frame = 2
Query:  209 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ 505
            S+R  + Q   E K  Y+   A++LLK++++ KF ETAEAH RL IDPKY DQQLR TVSLPKGTG++V+VAV+ +GEK  EA NAGAD+VG ++LIE+
Sbjct:    6 SRRLRDAQAKVENKA-YEPLEALTLLKELATAKFDETAEAHIRLGIDPKYTDQQLRTTVSLPKGTGRTVRVAVITRGEKVQEANNAGADIVGSEELIEE 103          

HSP 2 Score: 50.8322 bits (120), Expect = 2.273e-34
Identity = 24/35 (68.57%), Postives = 28/35 (80.00%), Query Frame = 1
Query:  505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            I  G M+F+ LIA+PDMM KVA LG+ LGPRGLMP
Sbjct:  104 IAKGMMDFEVLIATPDMMPKVAKLGRQLGPRGLMP 138          
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_TRIEI (50S ribosomal protein L1 OS=Trichodesmium erythraeum (strain IMS101) GN=rplA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.856e-34
Identity = 55/99 (55.56%), Postives = 76/99 (76.77%), Query Frame = 2
Query:  209 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ 505
            S+R  E++   E ++ Y+ K A+ LLK+ ++ KF E AEAH RL IDPKY DQQLR TV+LPKGTG+++++AV+A+GEK +EA  AGADL G ++LIEQ
Sbjct:    6 SRRLQELRKKVE-ERPYEPKEALQLLKETATAKFLEAAEAHVRLGIDPKYTDQQLRTTVALPKGTGQTIRIAVIAKGEKVNEALAAGADLAGSEELIEQ 103          

HSP 2 Score: 54.299 bits (129), Expect = 3.856e-34
Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 1
Query:  505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            I  G MEFD+LIA+PD+M +VA LG++LGPRGLMP
Sbjct:  104 ISKGMMEFDRLIATPDVMPQVAKLGRLLGPRGLMP 138          
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_CYAP7 (50S ribosomal protein L1 OS=Cyanothece sp. (strain PCC 7424) GN=rplA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.022e-34
Identity = 54/99 (54.55%), Postives = 74/99 (74.75%), Query Frame = 2
Query:  209 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ 505
            S+RF E     +  K Y+   A++LLK+ ++ KF ETAE H RL IDPKY DQQLR TV+ PKGTG++V+VAV+A+GEK  EA +AGAD+VG ++LI++
Sbjct:    6 SRRFKEALAKVDQDKAYEPLEALNLLKETATAKFDETAEVHVRLGIDPKYTDQQLRTTVTFPKGTGQTVRVAVIARGEKVQEASSAGADIVGSEELIDE 104          

HSP 2 Score: 54.299 bits (129), Expect = 5.022e-34
Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 1
Query:  505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            I+ G M+F+ LIA+PDMM KVA LG++LGPRGLMP
Sbjct:  105 IQNGMMDFEVLIATPDMMPKVAKLGRLLGPRGLMP 139          
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_ANAVT (50S ribosomal protein L1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.022e-34
Identity = 57/99 (57.58%), Postives = 74/99 (74.75%), Query Frame = 2
Query:  209 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ 505
            S+R  E+Q   E + EY    A+SLLK+ ++ KF E AEAH RL IDPKY DQQLR TV+LPKGTG+ V+VAV+A+GEK  EA NAGAD+ G ++LI++
Sbjct:    6 SRRLRELQAKVEDR-EYGPLDALSLLKETATAKFAEAAEAHIRLGIDPKYTDQQLRTTVALPKGTGQIVRVAVIARGEKVTEASNAGADVFGSEELIDE 103          

HSP 2 Score: 54.299 bits (129), Expect = 5.022e-34
Identity = 25/35 (71.43%), Postives = 31/35 (88.57%), Query Frame = 1
Query:  505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            I+ G M+FDKLIA+PD+M +VA LGK+LGPRGLMP
Sbjct:  104 IQKGRMDFDKLIATPDVMPQVAKLGKMLGPRGLMP 138          
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_ANASP (50S ribosomal protein L1 OS=Anabaena sp. (strain PCC 7120) GN=rplA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.541e-34
Identity = 57/99 (57.58%), Postives = 74/99 (74.75%), Query Frame = 2
Query:  209 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ 505
            S+R  E+Q   E + EY    A+ LLK+ ++ KF E AEAH RL IDPKY DQQLR TV+LPKGTG+ V+VAV+A+GEK  EA NAGAD+VG ++LI++
Sbjct:    6 SRRLRELQAKVEDR-EYGPLDALGLLKETATAKFGEAAEAHIRLGIDPKYTDQQLRTTVALPKGTGQIVRVAVIARGEKVTEASNAGADVVGSEELIDE 103          

HSP 2 Score: 54.299 bits (129), Expect = 6.541e-34
Identity = 25/35 (71.43%), Postives = 31/35 (88.57%), Query Frame = 1
Query:  505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            I+ G M+FDKLIA+PD+M +VA LGK+LGPRGLMP
Sbjct:  104 IQKGRMDFDKLIATPDVMPQVAKLGKMLGPRGLMP 138          
The following BLAST results are available for this feature:
BLAST of CX294939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK1_PEA1.221e-5884.7650S ribosomal protein L1, chloroplastic (Fragment)... [more]
RK1_SPIOL1.321e-5785.7150S ribosomal protein L1, chloroplastic OS=Spinaci... [more]
RK1_ARATH2.927e-5782.0850S ribosomal protein L1, chloroplastic OS=Arabido... [more]
RL1_CYAP81.028e-3458.5950S ribosomal protein L1 OS=Cyanothece sp. (strain... [more]
RK1_GRATL1.745e-3452.3850S ribosomal protein L1, chloroplastic OS=Gracila... [more]
RL1_MICAN2.273e-3458.5950S ribosomal protein L1 OS=Microcystis aeruginosa... [more]
RL1_TRIEI3.856e-3455.5650S ribosomal protein L1 OS=Trichodesmium erythrae... [more]
RL1_CYAP75.022e-3454.5550S ribosomal protein L1 OS=Cyanothece sp. (strain... [more]
RL1_ANAVT5.022e-3457.5850S ribosomal protein L1 OS=Anabaena variabilis (s... [more]
RL1_ANASP6.541e-3457.5850S ribosomal protein L1 OS=Anabaena sp. (strain P... [more]

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Properties
Property NameValue
Genbank descriptionC05057H01SK PhIFruit1 Citrus clementina cDNA clone C05057H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294939 ID=CX294939; Name=CX294939; organism=Citrus clementina; type=EST; length=609bp
GAGACAGAACAAAAATGGGCTTCCTGGACACATGCTGGCGGCTGCTTCTG
CTGTCGAAGCTGATACTGACTTGGCCACTGACGATGTGGAGGACGATACT
CAGGGAGGTGCTGAAGGAGCAACTGCTACTGCTACTGCTACTGCTACTAT
TTCAACTAAGCCTAAGAAAGGCAAGGCTGCGTTGCCTCTCAAGAGAGACA
GGACTAGGTCTAAAAGATTCCTGGAAATTCAAAATTTGAGGGAAGGCAAG
AAAGAGTATGATTTGAAGACGGCAATATCTTTGTTGAAGCAGATGTCAAG
TACAAAGTTCACGGAAACAGCTGAAGCCCATTTTCGCCTCAACATTGATC
CCAAATACAATGATCAACAGCTTAGAGCAACAGTGAGTTTACCCAAGGGA
ACTGGAAAATCTGTTAAGGTGGCTGTTCTTGCTCAAGGTGAAAAGTTCGA
TGAAGCAAAAAATGCAGGAGCAGATTTGGTTGGTGGTGATGACTTGATTG
AACAATAAAAGGAGGATTCATGGAGTTCGACAAGCTAATTGCTTCACCAG
ATATGATGGTTAAGGTTGCCAGCCTAGGAAAAATTCTTGGACCACGGGGA
CTCATGCCA
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