CX294943

Overview
NameCX294943
Unique NameCX294943
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length647
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10498 contig Ccv1_Contig10498:100..746. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294943 vs. ExPASy Swiss-Prot
Match: COL4_ARATH (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2)

HSP 1 Score: 278.485 bits (711), Expect = 2.079e-74
Identity = 148/223 (66.37%), Postives = 167/223 (74.89%), Query Frame = 2
Query:   11 MASKLCDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVDS-SAVKQGNGGVVNFLDEDRYLDHVDGRSGDVSREEAEAASW-LLPIPKVA---------------------DLNTGQAQEPYVFPDMDPYLDLDYGHVDTKLEAQEQNSSGTDGVVPVQNQNV 610
            MASKLCDSCKSATA ++CR D+AFLC++CD+K+HAANKLASRHARVW+CEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSV S  +VK      VNFLD D Y   +DG +G    EE EAASW LLP PK                       ++NTGQ    Y+F D DPYLDLDYG+VD K+E+ EQNSSGTDGVVPV+N+ V
Sbjct:    1 MASKLCDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWMCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVSSDGSVKH---TAVNFLD-DCYFSDIDG-NGSREEEEEEAASWLLLPNPKTTTTATAGIVAVTSAEEVPGDSPEMNTGQ---QYLFSDPDPYLDLDYGNVDPKVESLEQNSSGTDGVVPVENRTV 215          
BLAST of CX294943 vs. ExPASy Swiss-Prot
Match: COL3_ARATH (Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 3.687e-55
Identity = 114/197 (57.87%), Postives = 133/197 (67.51%), Query Frame = 2
Query:   14 ASKLCDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVDSSAVKQGNGGVVNFLDEDRYLDHVDGRSGDVSREEAEAASWLLPIPKVADLNTGQAQEPYVFPDMDPYLDLDYGHVDTKLEAQEQNSSGTDGVVPVQNQ 604
            +S+LCDSCKS  AT+FCRAD+AFLC +CD KIH ANKLASRH RVW+CEVCEQAPAHVTCKADAAALCVTCDRDIHSANPL+RRHERVP+TPFYD+V  +   +     VNF+DED          GDV+      ASWLL    +   N               + DLDY  ++      E+NSSG DGVVPVQN+
Sbjct:    4 SSRLCDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLSRRHERVPITPFYDAVGPA---KSASSSVNFVDED---------GGDVT------ASWLLAKEGIEITNL--------------FSDLDYPKIEV---TSEENSSGNDGVVPVQNK 165          
BLAST of CX294943 vs. ExPASy Swiss-Prot
Match: COL5_ARATH (Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana GN=COL5 PE=2 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 4.229e-43
Identity = 94/203 (46.31%), Postives = 122/203 (60.10%), Query Frame = 2
Query:   14 ASKLCDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVDSSAVKQGNGGVVNFLDEDRYLDHVDGRSGDVSREEAEAASWLLP--IPKVADLNTG----QAQEPYVFPDMDPYLDLDYGHVDTKLEAQEQNSSGTDGVVPVQNQ 604
            A++ CD+CKS TA VFCR DSAFLC+ CDT+IH+     +RH RVWVCEVCEQAPA VTCKADAAALCV+CD DIHSANPLA RHERVPV  F+DS +++  K         L        VD  +  V  ++     WLLP    + A +  G    +    ++F D D  +D ++ +         QN++G D +VPVQ +
Sbjct:   18 AARSCDACKSVTAAVFCRVDSAFLCIACDTRIHSF----TRHERVWVCEVCEQAPAAVTCKADAAALCVSCDADIHSANPLASRHERVPVETFFDSAETAVAKISASSTFGILGSS---TTVDLTAVPVMADDLGLCPWLLPNDFNEPAKIEIGTENMKGSSDFMFSDFDRLIDFEFPNSFN----HHQNNAGGDSLVPVQTK 209          
BLAST of CX294943 vs. ExPASy Swiss-Prot
Match: COL1_ARATH (Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.273e-39
Identity = 97/206 (47.09%), Postives = 124/206 (60.19%), Query Frame = 2
Query:   17 SKLCDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVDSSAVKQGNGGVVNFLDEDRYLDHVDGRSGDVSREEAEAASWLLP-IPKVADLNTGQAQEPYVFPDMDPYLDL-DYGHVDTKLEAQE----------QNSSGTDGVVPVQ 598
            ++ CD+C+SA  TV+CRADSA+LC +CD ++HAAN+LASRH RV VC+ CE+APA   CKADAA+LC TCD +IHSANPLARRH+RVP+ P  +   SS     +        E+R    V G+  +   +EAEAASWLLP   K +  N G       F   D +L+L DY   D +   Q           Q S G DGVVP+Q
Sbjct:    9 AQACDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRVCQSCERAPAAFFCKADAASLCTTCDSEIHSANPLARRHQRVPILPISEYSYSSTATNHSCETTVTDPENRL---VLGQE-EEDEDEAEAASWLLPNSGKNSGNNNG-------FSIGDEFLNLVDYSSSDKQFTDQSNQYQLDCNVPQRSYGEDGVVPLQ 203          
BLAST of CX294943 vs. ExPASy Swiss-Prot
Match: COL2_ARATH (Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.349e-38
Identity = 89/200 (44.50%), Postives = 113/200 (56.50%), Query Frame = 2
Query:   17 SKLCDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVDSSAVKQGNGGVVNFLDEDRYLDHVDGRSGDVSREEAEAASWLLPIPKVADLNTGQAQEPYVFPDMDPYLDL-DY-GHVDTKLEAQE----QNSSGTDGVVPVQ 598
            ++ CD+C+SA  TV+C ADSA+LC  CD ++HAAN++ASRH RV VC+ CE APA   CKADAA+LC  CD +IHSANPLARRH+RVP+ P   +  SS                           D   ++ E ASWLLP P     N G     ++F     YLDL DY   +D + E  +    Q S G DGVVP+Q
Sbjct:   13 ARACDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRVCQSCESAPAAFLCKADAASLCTACDAEIHSANPLARRHQRVPILPLSANSCSSMAPSET-------------------DADNDEDDREVASWLLPNP---GKNIGNQNNGFLFG--VEYLDLVDYSSSMDNQFEDNQYTHYQRSFGGDGVVPLQ 188          
BLAST of CX294943 vs. ExPASy Swiss-Prot
Match: CONS_ARATH (Zinc finger protein CONSTANS OS=Arabidopsis thaliana GN=CO PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.247e-36
Identity = 83/203 (40.89%), Postives = 116/203 (57.14%), Query Frame = 2
Query:   26 CDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVDSSAVKQGNGGVVNFLDEDRYL--DHVDGRSGDVSREEAEAASWLLPIPKVADLNTGQAQEPYVFPD-----MDPYLDLDYGHVDTKLEAQE-----QNSSGTDGVVPVQ 598
            CD+C+S   TV+C ADSA+LC++CD ++H+AN++ASRH RV VCE CE+APA   C+AD A+LC  CD ++HSANPLARRH+RVP+ P   +  SS     +       D ++ L  D  +G  GD  ++  E ASWL P    +D N        +F D     +D    +DY       + Q+     Q S G D VVP++
Sbjct:   20 CDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRVRVCESCERAPAAFLCEADDASLCTACDSEVHSANPLARRHQRVPILPISGNSFSSMTTTHHQSEKTMTDPEKRLVVDQEEGEEGD--KDAKEVASWLFP---NSDKNNNNQNNGLLFSDEYLNLVDYNSSMDYKFTGEYSQHQQNCSVPQTSYGGDRVVPLK 217          
BLAST of CX294943 vs. ExPASy Swiss-Prot
Match: STO_ARATH (Salt tolerance protein OS=Arabidopsis thaliana GN=STO PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.789e-17
Identity = 43/96 (44.79%), Postives = 55/96 (57.29%), Query Frame = 2
Query:   26 CDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWV---------CEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVT 286
            CD C+ A ATV C AD A LC  CD +IHAANKLAS+H R+ +         C++C++  A + C  D A LC  CD  IH AN  +  H+R   T
Sbjct:    5 CDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTKFPRCDICQEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQRFLAT 100          
BLAST of CX294943 vs. ExPASy Swiss-Prot
Match: STH_ARATH (Salt tolerance-like protein OS=Arabidopsis thaliana GN=STH PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.160e-16
Identity = 41/109 (37.61%), Postives = 60/109 (55.05%), Query Frame = 2
Query:   26 CDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWV---------CEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVDSSAVKQ 325
            CD C+ A AT+ C AD A LC  CD ++HAANKLAS+H R+++         C++C +  A + C  D A LC  CD   H+ N  +  H+R   T    ++ S++  Q
Sbjct:    5 CDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLFLDSLSTKFPPCDICLEKAAFIFCVEDRALLCRDCDEATHAPNTRSANHQRFLATGIRVALSSTSCNQ 113          
BLAST of CX294943 vs. ExPASy Swiss-Prot
Match: STHX_ARATH (Probable salt tolerance-like protein At1g75540 OS=Arabidopsis thaliana GN=At1g75540 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.514e-16
Identity = 44/111 (39.64%), Postives = 59/111 (53.15%), Query Frame = 2
Query:   26 CDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVW------------VCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVDSSAVK 322
            CD C    A+VFC AD A LC  CD ++H ANKLAS+H R              +C++C+   A + C+ D A LC  CD  IH+AN   ++H+R  +T    S  SS  K
Sbjct:    5 CDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSSSNTSSPLCDICQDKKALLFCQQDRAILCKDCDSSIHAANEHTKKHDRFLLTGVKLSATSSVYK 115          
BLAST of CX294943 vs. ExPASy Swiss-Prot
Match: STHY_ARATH (Probable salt tolerance-like protein At1g78600 OS=Arabidopsis thaliana GN=At1g78600 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.978e-16
Identity = 43/96 (44.79%), Postives = 55/96 (57.29%), Query Frame = 2
Query:   26 CDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWV---------CEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVT 286
            C+ C++A ATV C AD A LC  CD KIHAANKLA +H RV +         C++C++A     C  D A LC  CD  IH+ NP    H+R  +T
Sbjct:    5 CNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPLSASASSIPKCDICQEASGFFFCLQDRALLCRKCDVAIHTVNPHVSAHQRFLLT 100          
The following BLAST results are available for this feature:
BLAST of CX294943 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
COL4_ARATH2.079e-7466.37Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis... [more]
COL3_ARATH3.687e-5557.87Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis... [more]
COL5_ARATH4.229e-4346.31Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis... [more]
COL1_ARATH1.273e-3947.09Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis... [more]
COL2_ARATH5.349e-3844.50Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis... [more]
CONS_ARATH2.247e-3640.89Zinc finger protein CONSTANS OS=Arabidopsis thalia... [more]
STO_ARATH1.789e-1744.79Salt tolerance protein OS=Arabidopsis thaliana GN=... [more]
STH_ARATH1.160e-1637.61Salt tolerance-like protein OS=Arabidopsis thalian... [more]
STHX_ARATH1.514e-1639.64Probable salt tolerance-like protein At1g75540 OS=... [more]
STHY_ARATH1.978e-1644.79Probable salt tolerance-like protein At1g78600 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC05057H05SK PhIFruit1 Citrus clementina cDNA clone C05057H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294943 ID=CX294943; Name=CX294943; organism=Citrus clementina; type=EST; length=647bp
GTTGAGAGAAATGGCATCCAAGCTGTGTGACTCGTGCAAATCGGCAACGG
CGACTGTGTTCTGCCGGGCCGACTCGGCGTTCTTGTGTGTCAACTGCGAC
ACCAAAATCCACGCGGCCAACAAGCTGGCGTCGCGCCACGCGCGTGTCTG
GGTTTGCGAGGTGTGTGAGCAGGCGCCGGCCCACGTCACGTGCAAGGCAG
ACGCTGCGGCGCTCTGCGTCACGTGCGACCGCGACATCCATTCCGCCAAC
CCACTGGCCCGGCGCCACGAGCGAGTCCCCGTGACACCCTTCTACGACTC
AGTCGACTCCTCTGCCGTCAAGCAAGGCAACGGCGGAGTAGTCAACTTCT
TAGACGAAGACCGCTACTTGGACCACGTCGACGGGAGAAGCGGTGACGTC
AGCAGGGAGGAAGCAGAGGCGGCTTCGTGGCTGCTGCCGATCCCGAAGGT
GGCGGATTTGAACACGGGTCAGGCGCAGGAGCCGTATGTGTTCCCGGATA
TGGATCCGTATTTGGATTTAGATTACGGGCATGTGGATACGAAGCTAGAA
GCCCAGGAGCAAAACAGTTCGGGCACTGACGGTGTTGTTCCCGTACAAAA
CCAGAACGTTAACGCTAAACGCCATTTTGTCACGATGCATGCTTTGA
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