CX294945

Overview
NameCX294945
Unique NameCX294945
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length602
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX294945_ssr24 microsatellite CX294945_ssr24:24..37. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14817 contig Ccv1_Contig14817:1..597. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294945 vs. ExPASy Swiss-Prot
Match: RL18A_CASSA (60S ribosomal protein L18a OS=Castanea sativa GN=RPL18A PE=2 SV=1)

HSP 1 Score: 339.347 bits (869), Expect = 8.612e-93
Identity = 162/174 (93.10%), Postives = 168/174 (96.55%), Query Frame = 1
Query:   79 MVTFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSXIKFPLVFRKVRPPSRKLRTTYKANRP 600
            MVTFRFHQYQVVGR LP+E+DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMY EMASRHRVR PCIQIIKTATIPAKLCKRES+KQFHNS IKFPLV RK+RPPSRKL+T YKA+RP
Sbjct:    1 MVTFRFHQYQVVGRGLPSETDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYIEMASRHRVRFPCIQIIKTATIPAKLCKRESSKQFHNSKIKFPLVTRKIRPPSRKLKTHYKASRP 174          
BLAST of CX294945 vs. ExPASy Swiss-Prot
Match: R18A2_ARATH (60S ribosomal protein L18a-2 OS=Arabidopsis thaliana GN=RPL18AB PE=1 SV=2)

HSP 1 Score: 337.035 bits (863), Expect = 4.274e-92
Identity = 161/174 (92.53%), Postives = 166/174 (95.40%), Query Frame = 1
Query:   79 MVTFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSXIKFPLVFRKVRPPSRKLRTTYKANRP 600
            M  FRFHQYQVVGRALPTE D  PKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEI+EKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR PCIQIIKTAT+PAKLCKRESTKQFHNS IKFPLVFRKVRPPSRKL+TTYKAN+P
Sbjct:    1 MGAFRFHQYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLKTTYKANKP 174          
BLAST of CX294945 vs. ExPASy Swiss-Prot
Match: R18A3_ARATH (60S ribosomal protein L18a-3 OS=Arabidopsis thaliana GN=RPL18AC PE=2 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 1.796e-90
Identity = 157/171 (91.81%), Postives = 163/171 (95.32%), Query Frame = 1
Query:   88 FRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSXIKFPLVFRKVRPPSRKLRTTYKANRP 600
            FRFHQYQVVGRALPTE+DEHPKIYRMKLW  NEV AKSKFWYF+RKLKKVKKSNGQMLAINEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNG VEQMYTEMASRHRVR PCIQIIKTAT+PAKLCKRE TKQFHNS IKFPLVFRKVRPPSRKL+TTYKA++P
Sbjct:    4 FRFHQYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQMLAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCIQIIKTATVPAKLCKREITKQFHNSKIKFPLVFRKVRPPSRKLKTTYKASKP 174          
BLAST of CX294945 vs. ExPASy Swiss-Prot
Match: RL18A_ORYSJ (60S ribosomal protein L18a OS=Oryza sativa subsp. japonica GN=RPL18A PE=2 SV=1)

HSP 1 Score: 325.479 bits (833), Expect = 1.287e-88
Identity = 154/174 (88.51%), Postives = 164/174 (94.25%), Query Frame = 1
Query:   79 MVTFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSXIKFPLVFRKVRPPSRKLRTTYKANRP 600
            M  FRFHQYQVVGR LPT +DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+LAINEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR PCIQIIKTAT+  KLCKR++TKQFH S IKFPLV+RKVRPP+RKL+TT+KA+RP
Sbjct:    1 MGAFRFHQYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTRKLKTTFKASRP 174          
BLAST of CX294945 vs. ExPASy Swiss-Prot
Match: RL18A_DICDI (60S ribosomal protein L18a OS=Dictyostelium discoideum GN=rpl18a PE=3 SV=2)

HSP 1 Score: 193.741 bits (491), Expect = 5.844e-49
Identity = 94/168 (55.95%), Postives = 120/168 (71.43%), Query Frame = 1
Query:   97 HQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSXIKFPLVFRKVRPPSRKLRTTYKANRP 600
            H++QVVGR +PTE D +PKIYRM+L+A   + AKS+FWYFL K+ K+KKS G++L + EIFE  P K+KN+G+++RY SR+G HN+YKEYRD T  GAV QMY EMASRH  R   I II    I A L +R +TKQFH+S IKFPL  R       K ++T+ ANRP
Sbjct:    4 HEFQVVGRHVPTERDANPKIYRMRLFAQTSIHAKSRFWYFLSKIVKMKKSTGEILNVTEIFEDKPQKVKNFGVFIRYNSRSGTHNIYKEYRDLTRCGAVSQMYDEMASRHSARESSIHIIDIKEIAASLTRRANTKQFHDSKIKFPLTHR-----IAKSKSTFVANRP 166          
BLAST of CX294945 vs. ExPASy Swiss-Prot
Match: RL18A_SPOFR (60S ribosomal protein L18a OS=Spodoptera frugiperda GN=RpL18A PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.207e-47
Identity = 87/167 (52.10%), Postives = 121/167 (72.46%), Query Frame = 1
Query:  100 QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSXIKFPLVFRKVRPPSRKLRTTYKANRP 600
            +Y+V+GR LP+ES+  P +Y+M++++ +++ AKS+FWYFLR+LKK KK+ G++++I EI EK+P KIKN+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R+  IQIIK   I A  C+R   KQFHNS I+FPL     R    K   T+   RP
Sbjct:    9 EYEVIGRKLPSESEPKPPLYKMRIFSPDQIVAKSRFWYFLRQLKKFKKTTGEIVSIREIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKASACRRPQVKQFHNSTIRFPL---PKRVHHHKRLNTFAYKRP 172          
BLAST of CX294945 vs. ExPASy Swiss-Prot
Match: RL18A_HUMAN (60S ribosomal protein L18a OS=Homo sapiens GN=RPL18A PE=1 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 2.079e-46
Identity = 86/165 (52.12%), Postives = 118/165 (71.52%), Query Frame = 1
Query:  100 QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSXIKFPLVFRKVRPPSRKLRTTYKAN 594
            +Y+VVGR LPT     P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++   ++FEK+P ++KN+GIWLRY SR+G HNMY+EYRD T  GAV Q Y +M +RHR R+  IQI+K   I A  C+R + KQFH+S IKFPL  R +R   +   TT + N
Sbjct:    9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPN 173          
BLAST of CX294945 vs. ExPASy Swiss-Prot
Match: RL18A_DROME (60S ribosomal protein L18a OS=Drosophila melanogaster GN=RpL18A PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.079e-46
Identity = 85/158 (53.80%), Postives = 118/158 (74.68%), Query Frame = 1
Query:  100 QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSXIKFPLVFRKVRPPSRKL 573
            +Y+VVGR LP+E +    +Y+M+++A + + AKS+FWYFLR+LKK KK+ G++++I +++E +P KIKN+GIWLRY SR+G HNMY+EYRD T+ GAV Q Y +M +RHR R+  IQIIK  +IPA   +R   KQFH+S IKFPLV R     +RKL
Sbjct:    9 EYEVVGRKLPSEKEPQTPLYKMRIFAPDNIVAKSRFWYFLRQLKKFKKTTGEIVSIKQVYETSPVKIKNFGIWLRYDSRSGTHNMYREYRDLTVGGAVTQCYRDMGARHRARAHSIQIIKVDSIPAAKTRRVHVKQFHDSKIKFPLVQRVHHKGNRKL 166          
BLAST of CX294945 vs. ExPASy Swiss-Prot
Match: RL18A_BOVIN (60S ribosomal protein L18a OS=Bos taurus GN=RPL18A PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.079e-46
Identity = 86/165 (52.12%), Postives = 118/165 (71.52%), Query Frame = 1
Query:  100 QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSXIKFPLVFRKVRPPSRKLRTTYKAN 594
            +Y+VVGR LPT     P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++   ++FEK+P ++KN+GIWLRY SR+G HNMY+EYRD T  GAV Q Y +M +RHR R+  IQI+K   I A  C+R + KQFH+S IKFPL  R +R   +   TT + N
Sbjct:    9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPN 173          
BLAST of CX294945 vs. ExPASy Swiss-Prot
Match: RL18A_RAT (60S ribosomal protein L18a OS=Rattus norvegicus GN=Rpl18a PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.546e-46
Identity = 86/165 (52.12%), Postives = 118/165 (71.52%), Query Frame = 1
Query:  100 QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSXIKFPLVFRKVRPPSRKLRTTYKAN 594
            +Y+VVGR LPT     P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++   ++FEK+P ++KN+GIWLRY SR+G HNMY+EYRD T  GAV Q Y +M +RHR R+  IQI+K   I A  C+R + KQFH+S IKFPL  R +R   +   TT + N
Sbjct:    9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPN 173          
The following BLAST results are available for this feature:
BLAST of CX294945 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RL18A_CASSA8.612e-9393.1060S ribosomal protein L18a OS=Castanea sativa GN=R... [more]
R18A2_ARATH4.274e-9292.5360S ribosomal protein L18a-2 OS=Arabidopsis thalia... [more]
R18A3_ARATH1.796e-9091.8160S ribosomal protein L18a-3 OS=Arabidopsis thalia... [more]
RL18A_ORYSJ1.287e-8888.5160S ribosomal protein L18a OS=Oryza sativa subsp. ... [more]
RL18A_DICDI5.844e-4955.9560S ribosomal protein L18a OS=Dictyostelium discoi... [more]
RL18A_SPOFR3.207e-4752.1060S ribosomal protein L18a OS=Spodoptera frugiperd... [more]
RL18A_HUMAN2.079e-4652.1260S ribosomal protein L18a OS=Homo sapiens GN=RPL1... [more]
RL18A_DROME2.079e-4653.8060S ribosomal protein L18a OS=Drosophila melanogas... [more]
RL18A_BOVIN2.079e-4652.1260S ribosomal protein L18a OS=Bos taurus GN=RPL18A... [more]
RL18A_RAT3.546e-4652.1260S ribosomal protein L18a OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionC05057H08SK PhIFruit1 Citrus clementina cDNA clone C05057H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294945 ID=CX294945; Name=CX294945; organism=Citrus clementina; type=EST; length=602bp
CTCGTGCCGAATTCGGCACGAGGGAGAGAGAGAGAGAGTTACGCTGCGGA
GATCGTCACATCTTGTATTTCCTCGAAAATGGTCACTTTCAGGTTTCACC
AGTATCAGGTTGTTGGGAGAGCTCTTCCAACTGAGTCCGATGAGCATCCT
AAGATTTACAGGATGAAGTTGTGGGCCACGAATGAGGTTCGAGCCAAGTC
CAAGTTCTGGTACTTTCTTAGAAAGCTCAAGAAGGTCAAGAAGAGTAATG
GTCAAATGCTTGCCATTAACGAGATTTTTGAGAAGAACCCAACCAAGATC
AAGAACTATGGCATCTGGTTGCGTTATCAGAGTCGAACTGGTTATCACAA
TATGTACAAGGAGTACCGTGATACCACTCTGAACGGGGCTGTGGAGCAGA
TGTACACTGAGATGGCTTCTCGCCATAGGGTCAGGTCTCCTTGCATTCAA
ATTATCAAGACTGCTACCATCCCTGCGAAGCTATGCAAGAGAGAAAGCAC
CAAGCAGTTCCACAATTCANAAATCAAGTTTCCGTTGGTGTTCAGGAAGG
TGAGACCACCAAGCAGGAAGCTGAGGACCACATACAAGGCAAACAGGCCT
AA
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