CX294946

Overview
NameCX294946
Unique NameCX294946
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length588
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11964 contig Ccv1_Contig11964:2..589. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294946 vs. ExPASy Swiss-Prot
Match: PSAG_ARATH (Photosystem I reaction center subunit V, chloroplastic OS=Arabidopsis thaliana GN=PSAG PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 5.963e-51
Identity = 101/143 (70.63%), Postives = 120/143 (83.92%), Query Frame = 1
Query:  163 ASSSLFTPSTITVRKHQISPSTISFQGLRPLNTRAKTS-LPKLATSAKRNSFGGIKAELSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYI 588
            ++S+L +P+T +      +P++ISF GLRPL     +S LPKL+T+ +++S   ++AELS  +VISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNG THFEAGD RAKEYVSLLKSNDP+GFNIVDVLAWGSIGHIVAYYI
Sbjct:    4 SASALLSPTTFSTAISHKNPNSISFHGLRPLRLGGSSSALPKLSTTGRKSSSAVVRAELSPSIVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGKTHFEAGDDRAKEYVSLLKSNDPIGFNIVDVLAWGSIGHIVAYYI 146          
BLAST of CX294946 vs. ExPASy Swiss-Prot
Match: PSAG_SPIOL (Photosystem I reaction center subunit V, chloroplastic OS=Spinacia oleracea GN=PSAG PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.127e-41
Identity = 92/121 (76.03%), Postives = 100/121 (82.64%), Query Frame = 1
Query:  232 SFQGLRPL--NTRAKTSLPKLATSAKRNSFGGIKAELSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYI 588
            SF GLRPL  N  +  S   L+ S+ R S    +AELS  LVISLSTGLSLFLGRFVFFNFQREN+AKQ +PEQNG++HFEAGD RAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYI
Sbjct:   36 SFSGLRPLKLNISSNNSSSSLSMSSARRSMT-CRAELSPSLVISLSTGLSLFLGRFVFFNFQRENMAKQ-VPEQNGMSHFEAGDTRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYI 154          
BLAST of CX294946 vs. ExPASy Swiss-Prot
Match: PSAG_HORVU (Photosystem I reaction center subunit V, chloroplastic OS=Hordeum vulgare GN=PSAG PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.512e-35
Identity = 80/125 (64.00%), Postives = 95/125 (76.00%), Query Frame = 1
Query:  214 ISPSTISFQGLRPLNTRAKTSLPKLATSAKRNSFGGIKAELSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYI 588
            +SP  ++   L P + RA  S   ++  A+R+     +A L   +VISLSTGLSL +GRFVFFNFQRENVAKQ +PEQNG THFEAGD RAKE+  +LKSNDPVGFN+VDVLAWGSIGHIVAYYI
Sbjct:    9 LSPPAVAGLRLAP-SPRAAASFRGVSPPARRSV--AARAALEPSVVISLSTGLSLVMGRFVFFNFQRENVAKQ-VPEQNGKTHFEAGDERAKEFAGILKSNDPVGFNLVDVLAWGSIGHIVAYYI 129          
BLAST of CX294946 vs. ExPASy Swiss-Prot
Match: PSAG_TORRU (Photosystem I reaction center subunit V, chloroplastic OS=Tortula ruralis GN=PSAG PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.135e-17
Identity = 43/84 (51.19%), Postives = 56/84 (66.67%), Query Frame = 1
Query:  337 STPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYI 588
            +T  +IS ST   L LGRFVF  FQR  V++ GLPEQNGV          + + S+LK+NDP GF +VDVLAWG++GH V ++I
Sbjct:   17 NTSFIISASTAALLALGRFVFLPFQRSMVSRHGLPEQNGVPTTRRVTAVRRRWWSMLKTNDPAGFTLVDVLAWGALGHAVGFFI 100          
BLAST of CX294946 vs. ExPASy Swiss-Prot
Match: PSAG_PEA (Photosystem I reaction center subunit V (Fragment) OS=Pisum sativum GN=PSAG PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.875e-12
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 1
Query:  331 ELSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ 447
            EL+  LVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ
Sbjct:    1 ELNPSLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ 39          
The following BLAST results are available for this feature:
BLAST of CX294946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PSAG_ARATH5.963e-5170.63Photosystem I reaction center subunit V, chloropla... [more]
PSAG_SPIOL1.127e-4176.03Photosystem I reaction center subunit V, chloropla... [more]
PSAG_HORVU3.512e-3564.00Photosystem I reaction center subunit V, chloropla... [more]
PSAG_TORRU1.135e-1751.19Photosystem I reaction center subunit V, chloropla... [more]
PSAG_PEA1.875e-1292.31Photosystem I reaction center subunit V (Fragment)... [more]
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Properties
Property NameValue
Genbank descriptionC05057H09SK PhIFruit1 Citrus clementina cDNA clone C05057H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294946 ID=CX294946; Name=CX294946; organism=Citrus clementina; type=EST; length=588bp
GAGAATACGTGATCCATATCTGTGTTTCTATCGCCGCTAAGCCTGTTCTA
TTTCTTGCAAAAATTTATCATAATCCAGGAACTCAAAAACTCCATCATCC
ATCAAGGCATCAACCAGAACACAAAAAAGAAGGAAAAAGAGGGGGAAAAA
AGAAAAATGGCAGCCTCATCCTCCTTGTTCACACCCTCCACCATCACCGT
CCGAAAACACCAAATTTCACCCTCCACCATCTCATTCCAAGGCCTAAGAC
CCCTCAACACCAGGGCCAAAACCTCCCTCCCCAAGCTCGCCACCTCCGCC
AAAAGAAACAGCTTCGGCGGCATTAAAGCTGAGCTGAGCACACCACTTGT
CATCAGCCTCAGCACTGGCCTCTCCTTGTTCTTGGGCAGGTTCGTCTTCT
TCAACTTCCAAAGAGAGAACGTGGCCAAACAAGGCTTGCCCGAGCAGAAT
GGAGTCACCCACTTTGAAGCCGGTGATGTTCGTGCCAAGGAATATGTTAG
CCTCCTCAAATCCAACGACCCAGTTGGCTTTAACATTGTTGATGTTCTTG
CTTGGGGTTCCATTGGCCATATTGTCGCTTACTACATC
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