CX294948

Overview
NameCX294948
Unique NameCX294948
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294948 vs. ExPASy Swiss-Prot
Match: AGO4B_ORYSJ (Protein argonaute 4B OS=Oryza sativa subsp. japonica GN=AGO4B PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.461e-37
Identity = 75/94 (79.79%), Postives = 84/94 (89.36%), Query Frame = 1
Query:   16 HEDVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFMKFDDLSETSSSQGGMTSAGPVPVPQLPRLQEKVCNSMFFC 297
            H  VL DEIGFS D+LQELVHSLSYVYQRSTTAISVVAPICYAHLAA+QVG+F+KF+D+S+ SSSQGG TS G VPVP+LPRL EKV +SMFFC
Sbjct:  818 HYHVLHDEIGFSPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGTFLKFEDMSDASSSQGGHTSVGSVPVPELPRLHEKVRSSMFFC 911          
BLAST of CX294948 vs. ExPASy Swiss-Prot
Match: AGO4A_ORYSJ (Protein argonaute 4A OS=Oryza sativa subsp. japonica GN=AGO4A PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.144e-36
Identity = 73/94 (77.66%), Postives = 82/94 (87.23%), Query Frame = 1
Query:   16 HEDVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFMKFDDLSETSSSQGGMTSAGPVPVPQLPRLQEKVCNSMFFC 297
            H  +L DEIGFS+D+LQELVHSLSYVYQRSTTAISVVAPICYAHLAA+QV  F+KFD++SETSSS GG TSAG  PVP+LPRL  KV +SMFFC
Sbjct:  811 HYHILHDEIGFSADDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVSQFIKFDEMSETSSSHGGHTSAGSAPVPELPRLHNKVRSSMFFC 904          
BLAST of CX294948 vs. ExPASy Swiss-Prot
Match: AGO16_ORYSJ (Protein argonaute 16 OS=Oryza sativa subsp. japonica GN=AGO16 PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 2.013e-30
Identity = 64/94 (68.09%), Postives = 76/94 (80.85%), Query Frame = 1
Query:   16 HEDVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFMKFDDLSETSSSQGGMTSAGPVPVPQLPRLQEKVCNSMFFC 297
            H  VL DEIGF  D++Q+LV SLSYVYQRSTTAISVVAPICYAHLAA+Q+G FMKF++ +ETSS  GG+ S+    VP+LPRL   VC+SMFFC
Sbjct:  790 HYHVLLDEIGFLPDDVQKLVLSLSYVYQRSTTAISVVAPICYAHLAAAQMGQFMKFEEFAETSSGSGGVPSSSGAVVPELPRLHADVCSSMFFC 883          
BLAST of CX294948 vs. ExPASy Swiss-Prot
Match: AGO15_ORYSJ (Protein argonaute 15 OS=Oryza sativa subsp. japonica GN=AGO15 PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.493e-25
Identity = 60/94 (63.83%), Postives = 68/94 (72.34%), Query Frame = 1
Query:   16 HEDVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFMKFDDLSETSSSQGGMTSAGPVPVPQLPRLQEKVCNSMFFC 297
            H  VL DE  F+ D+LQELVH+LSYVYQRSTTAIS VAPICYAHLAA+QV  F++ DD +   S  GG   A P PVP+LPRL   V  SMFFC
Sbjct:  799 HYHVLHDENNFTPDDLQELVHNLSYVYQRSTTAISGVAPICYAHLAAAQVSQFVRLDDAASEGSGDGG---APPRPVPELPRLHPDVRQSMFFC 889          
BLAST of CX294948 vs. ExPASy Swiss-Prot
Match: MEL1_ORYSJ (Protein argonaute MEL1 OS=Oryza sativa subsp. japonica GN=MEL1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.921e-13
Identity = 42/97 (43.30%), Postives = 58/97 (59.79%), Query Frame = 1
Query:   16 HEDVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFMK---FDDLSETSSSQGGMTSAGPVPVPQLPRLQEKVCNSMFFC 297
            H  VL+DE  F++D LQ L ++L Y Y R T A+SVV P  YAHLAA +   +++    D  S   SS   +   GPV V QLP+++E V + MF+C
Sbjct:  962 HYHVLYDENHFTADALQSLTNNLCYTYARCTRAVSVVPPAYYAHLAAFRARYYVEGESSDGGSTPGSSGQAVAREGPVEVRQLPKIKENVKDVMFYC 1058          
BLAST of CX294948 vs. ExPASy Swiss-Prot
Match: AGO11_ORYSJ (Protein argonaute 11 OS=Oryza sativa subsp. japonica GN=AGO11 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.921e-13
Identity = 41/99 (41.41%), Postives = 57/99 (57.58%), Query Frame = 1
Query:   16 HEDVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFMKFDDL-----SETSSSQGGMTSAGPVPVPQLPRLQEKVCNSMFFC 297
            H  VLFDE  FS+D LQ L + L Y Y R T ++S+V P+ YAHLAAS+   +++   L     S  S++ G   +   VPV  LP ++E V   MF+C
Sbjct:  794 HYYVLFDENNFSADALQTLTYHLCYTYARCTRSVSIVPPVYYAHLAASRARHYLEEGSLPDHGSSSASAAGGSRRNDRGVPVKPLPEIKENVKQFMFYC 892          
BLAST of CX294948 vs. ExPASy Swiss-Prot
Match: PNH1_ORYSJ (Protein argonaute PNH1 OS=Oryza sativa subsp. japonica GN=PHN1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12
Identity = 38/94 (40.43%), Postives = 56/94 (59.57%), Query Frame = 1
Query:   16 HEDVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFMKFDDLSETSSSQGGMTSAGPVPVPQLPRLQEKVCNSMFFC 297
            H  VL+DE  F++DE+Q L ++L Y Y R T ++SVV P  YAHLAA +   +M+  ++SE  ++    T      V  LP ++EKV   MF+C
Sbjct:  887 HYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYME-PEMSENQTTSKSSTGTNGTSVKPLPAVKEKVKRVMFYC 979          
BLAST of CX294948 vs. ExPASy Swiss-Prot
Match: AGOL_ARATH (Argonaute-like protein At2g27880 OS=Arabidopsis thaliana GN=At2g27880 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.194e-12
Identity = 39/96 (40.62%), Postives = 60/96 (62.50%), Query Frame = 1
Query:   16 HEDVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFMKFDDLSE--TSSSQGGMTSAGPVPVPQLPRLQEKVCNSMFFC 297
            H  VL DE GF++D+LQ L ++L Y Y R T ++S+V P  YAHLAA +   +M+  ++S+  +S S+   T  G V + QLP +++ V   MF+C
Sbjct:  904 HYHVLLDENGFTADQLQMLTNNLCYTYARCTKSVSIVPPAYYAHLAAFRARYYME-SEMSDGGSSRSRSSTTGVGQV-ISQLPAIKDNVKEVMFYC 997          
BLAST of CX294948 vs. ExPASy Swiss-Prot
Match: AGO1D_ORYSJ (Protein argonaute 1D OS=Oryza sativa subsp. japonica GN=AGO1D PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.194e-12
Identity = 42/103 (40.78%), Postives = 59/103 (57.28%), Query Frame = 1
Query:   16 HEDVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFMKFD--DLSETSSSQGGMTS-------AGPVPVPQLPRLQEKVCNSMFFC 297
            H  VL+DE  F++D LQ L ++L Y Y R T ++S+V P  YAHLAA +   +M+ D  D    +S +GG +S       AG   V  LP L++ V N MF+C
Sbjct:  936 HYHVLWDENNFTADALQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMESDSSDSGSMASGRGGGSSTSRSTRAAGGGAVRPLPALKDSVKNVMFYC 1038          
BLAST of CX294948 vs. ExPASy Swiss-Prot
Match: AGO1B_ORYSJ (Protein argonaute 1B OS=Oryza sativa subsp. japonica GN=AGO1B PE=2 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 7.194e-12
Identity = 42/106 (39.62%), Postives = 57/106 (53.77%), Query Frame = 1
Query:   16 HEDVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFMKFDDLSETSSSQGGMTS------------AGPVPVPQLPRLQEKVCNSMFFC 297
            H  VL+DE  F++DELQ L ++L Y Y R T ++S+V P  YAHLAA +   +M+ +     S + G  TS            AG V V  LP L+E V   MF+C
Sbjct: 1013 HYHVLWDENKFTADELQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMASGAATSRGLPPGVRSARVAGNVAVRPLPALKENVKRVMFYC 1118          
The following BLAST results are available for this feature:
BLAST of CX294948 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
AGO4B_ORYSJ6.461e-3779.79Protein argonaute 4B OS=Oryza sativa subsp. japoni... [more]
AGO4A_ORYSJ7.144e-3677.66Protein argonaute 4A OS=Oryza sativa subsp. japoni... [more]
AGO16_ORYSJ2.013e-3068.09Protein argonaute 16 OS=Oryza sativa subsp. japoni... [more]
AGO15_ORYSJ1.493e-2563.83Protein argonaute 15 OS=Oryza sativa subsp. japoni... [more]
MEL1_ORYSJ2.921e-1343.30Protein argonaute MEL1 OS=Oryza sativa subsp. japo... [more]
AGO11_ORYSJ2.921e-1341.41Protein argonaute 11 OS=Oryza sativa subsp. japoni... [more]
PNH1_ORYSJ1.450e-1240.43Protein argonaute PNH1 OS=Oryza sativa subsp. japo... [more]
AGOL_ARATH7.194e-1240.63Argonaute-like protein At2g27880 OS=Arabidopsis th... [more]
AGO1D_ORYSJ7.194e-1240.78Protein argonaute 1D OS=Oryza sativa subsp. japoni... [more]
AGO1B_ORYSJ7.194e-1239.62Protein argonaute 1B OS=Oryza sativa subsp. japoni... [more]

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Properties
Property NameValue
Genbank descriptionC05057H11SK PhIFruit1 Citrus clementina cDNA clone C05057H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294948 ID=CX294948; Name=CX294948; organism=Citrus clementina; type=EST; length=678bp
CTCGTGCCGAATCGGCACGAGGACGTTCTATTTGATGAAATTGGCTTTTC
AAGTGATGAGCTGCAGGAACTAGTGCACTCACTTTCTTATGTGTACCAGA
GAAGCACTACAGCCATTTCTGTAGTTGCTCCAATTTGCTATGCCCACTTG
GCAGCAAGCCAGGTAGGATCATTCATGAAGTTTGACGACTTATCAGAGAC
ATCTTCTAGCCAGGGTGGGATGACATCTGCTGGACCTGTTCCTGTCCCCC
AGCTGCCTAGACTGCAGGAGAAAGTGTGCAATTCAATGTTCTTCTGTTGA
GACACTTGTGTGGCTTCTACCGTCAATCAGAATCCTATCAAAGTAGTTTG
TATATAGTTAGCCTTTTGGTTTTCATCTGGACCATCCAGTGGCAAAGGTG
TCTAGAACTTGTAGTGATGCCTTGAAAATCTCTGCTATTTAATTTTGGGT
CTAGAAACAGAAAGTGCCCTGTGCCTTTGTTTTTGTGGTGATTACTGGTG
TTGTTGACTCTTGCCAGTCCCATGCATTCGCCAGTCTCTCTATTTCCCCA
GACAGCAATGGGCTGTTAAACTGTTATTTTGATGGATTCAGGCATTTGGG
TATCGGAAATTGGAATGATTGGCATGTTTTTAGTAGCACTTTGTGGCCCT
TTTCGTATTGCAATATTGACATGCCTTT
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