CX294956

Overview
NameCX294956
Unique NameCX294956
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX294956_ssr6 microsatellite CX294956_ssr6:6..17. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig8057 contig Ccv1_Contig8057:147..880. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294956 vs. ExPASy Swiss-Prot
Match: PYK1_DICDI (Dual specificity protein kinase pyk1 OS=Dictyostelium discoideum GN=splA PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 6.977e-11
Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = 1
Query:  511 KCDWEIDPSELDFSSSAIIGKGSFGEILKAYWRGTPVAIKRILPSLSDDRLVIQDFRHEVNLLVKLRHPNIVQF 732
            + ++EID +EL+F  +  IGKG FGE+ + YWR T VAIK I       +  +  F++EV +L KLRHPN+VQF
Sbjct: 2105 RSEYEIDFNELEFGQT--IGKGFFGEVKRGYWRETDVAIKIIYRDQFKTKSSLVMFQNEVGILSKLRHPNVVQF 2176          
BLAST of CX294956 vs. ExPASy Swiss-Prot
Match: YR826_MIMIV (Putative serine/threonine-protein kinase/receptor R826 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R826 PE=4 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 32/72 (44.44%), Postives = 46/72 (63.89%), Query Frame = 1
Query:  517 DWEIDPSELDFSSSAIIGKGSFGEILKAYWRGTPVAIKRILPSLSDDRLVIQDFRHEVNLLVKLRHPNIVQF 732
            DWEID  EL+      +G G+FGE+ K  WRGT VA+K I P  +  + + ++F+ EV ++  LRHPN+V F
Sbjct:  778 DWEIDFHELELGEQ--LGTGAFGEVHKGTWRGTEVAVKMISPDKTITKDIERNFKDEVRVMTTLRHPNVVLF 847          
The following BLAST results are available for this feature:
BLAST of CX294956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PYK1_DICDI6.977e-1147.30Dual specificity protein kinase pyk1 OS=Dictyostel... [more]
YR826_MIMIV9.112e-1144.44Putative serine/threonine-protein kinase/receptor ... [more]
back to top
Properties
Property NameValue
Genbank descriptionC05065A07SK DroRLeaf1 Citrus clementina cDNA clone C05065A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294956 ID=CX294956; Name=CX294956; organism=Citrus clementina; type=EST; length=734bp
CCGCTCAAACAAACAAACCAGCAGCCCACCATCCGAACAAGAAAACGAGA
AAGATCCGATCCGTTTCAGCACATGAGTTCGGGTAATTCCTCTCCTGGCG
ATTCCACGACGCCCTGTAAGGGAGGCGCCACGTCCTCAGCCGACAAGCAG
AAGGAGAAGGCGAGAGTGAGCAGGACGTCTCTGATACTCTGGCACGCTCA
CCAAAACGACGCCGCTGCCGTCCGCAAGCTCCTCGAGGAAGATCAGTCTC
TTGTCCACGCCAGGGACTACGACAATCGGACCCCGCTCCACGTCGCGTCC
CTCCATGGCTGGATCGACGTGGCCAAATGCCTGATCGAGTACGGCGCTGA
CGTCAACGCTCAGGATCGCTGGAAAAATACGCCGCTAGCTGATGCCGAAG
GAGCTAAGAAATTCAACATGATGGAGCTTTTGAATGCTCATGGTGGCCTG
TCTTATGGTCAAAATGGAAGTCACTTTGAACCAAAGCCAGTCCCTCCCCC
TCTGCCAAACAAGTGTGACTGGGAAATTGACCCTTCTGAGCTGGACTTCT
CAAGCTCGGCAATTATTGGGAAGGGGTCTTTCGGTGAGATTTTAAAAGCC
TATTGGCGAGGAACACCAGTTGCTATCAAACGCATACTTCCGTCACTTTC
AGATGATAGATTGGTGATTCAGGACTTCAGGCATGAGGTCAATTTGCTGG
TGAAACTTCGCCATCCTAATATAGTCCAATTCCT
back to top