CX294960

Overview
NameCX294960
Unique NameCX294960
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294960 vs. ExPASy Swiss-Prot
Match: CCR4E_ARATH (Carbon catabolite repressor protein 4 homolog 5 OS=Arabidopsis thaliana GN=CCR4-5 PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.415e-24
Identity = 63/122 (51.64%), Postives = 71/122 (58.20%), Query Frame = 2
Query:   44 SQSQSLVVGNIHVLFNPNRGDIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPNVRSSIVIFD*PALNYLYYVLFNF*DL*PFYDLSFISSHPQSALYQFLASSELDVCQHDRRHISGQ 409
            S  + LVVGNIHVLFNP RGDIKLGQ+RLFLEKAYKLSQEWG IPV +AGDLNS+                                        PQSA+Y F+AS++LD   HDRR ISGQ
Sbjct:  235 SDPRRLVVGNIHVLFNPKRGDIKLGQVRLFLEKAYKLSQEWGNIPVAIAGDLNST----------------------------------------PQSAIYDFIASADLDTQLHDRRQISGQ 316          
BLAST of CX294960 vs. ExPASy Swiss-Prot
Match: CCR4C_ARATH (Carbon catabolite repressor protein 4 homolog 3 OS=Arabidopsis thaliana GN=CCR4-3 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.375e-18
Identity = 49/127 (38.58%), Postives = 71/127 (55.91%), Query Frame = 2
Query:   44 SQSQSLVVGNIHVLFNPNRGDIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPNVRSSIVIFD*PALNYLYYVLFNF*DL*PFYDLSFISSHPQSALYQFLASSELDVCQHDRRHISGQFAKCR 424
            ++S+ +++GNIHVL+NPN+GD+KLGQ+R    KA+ LS++WG IP++L GD NS+                                        P+S LY FLASSEL+V +HD++ +SGQ   CR
Sbjct:  233 NKSRKILLGNIHVLYNPNQGDVKLGQVRSLCSKAHLLSKKWGDIPIVLCGDFNST----------------------------------------PKSPLYNFLASSELNVMEHDKKELSGQ-KNCR 318          
BLAST of CX294960 vs. ExPASy Swiss-Prot
Match: CCR4F_ARATH (Carbon catabolite repressor protein 4 homolog 6 OS=Arabidopsis thaliana GN=CCR4-6 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.816e-11
Identity = 29/54 (53.70%), Postives = 39/54 (72.22%), Query Frame = 2
Query:   50 SQSLVVGNIHVLFNPNRGDIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSP 211
            S  +V+ NIHVLFNP RGD KLGQ+R  L+KA+ +S+ W   P++L GD N +P
Sbjct:  324 SHRVVICNIHVLFNPKRGDFKLGQVRTLLDKAHAVSKLWDDAPIVLCGDFNCTP 377          
The following BLAST results are available for this feature:
BLAST of CX294960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CCR4E_ARATH1.415e-2451.64Carbon catabolite repressor protein 4 homolog 5 OS... [more]
CCR4C_ARATH3.375e-1838.58Carbon catabolite repressor protein 4 homolog 3 OS... [more]
CCR4F_ARATH6.816e-1153.70Carbon catabolite repressor protein 4 homolog 6 OS... [more]
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Properties
Property NameValue
Genbank descriptionC05065A11SK DroRLeaf1 Citrus clementina cDNA clone C05065A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294960 ID=CX294960; Name=CX294960; organism=Citrus clementina; type=EST; length=725bp
AACTTGATTACTGAGATGCATATGTTTATACAGGTCTATGGTCTCCCAAA
GTCAAAGCTTAGTGGTTGGAAATATACATGTGCTTTTCAACCCAAACCGT
GGTGACATCAAGCTAGGACAGATACGATTATTTCTAGAGAAGGCTTACAA
GCTTTCACAAGAATGGGGTGGCATTCCTGTTCTACTTGCTGGTGACTTGA
ACAGCAGTCCAAATGTAAGATCCAGTATTGTAATTTTTGATTGACCAGCT
TTAAATTACCTTTACTATGTGCTTTTTAACTTTTAAGATCTGTGACCATT
TTATGACCTCAGTTTTATTTCATCTCATCCTCAGAGTGCACTTTATCAGT
TTCTGGCTTCCTCTGAGTTGGATGTTTGTCAGCATGATCGCAGACATATT
TCTGGCCAGTTTGCAAAATGCAGAGACATTGAATTTCAGAAAAGGAATTC
AACTAGGTAGATTTCAGCTTTCTAGTTCCCTTTCTACTAATTATTTTTTG
ATCCTAAAATTAGCTTAATGTTTACAGAAATCTTTGACAAATATTTATTT
GTGGTTATCAGTGATTGTAATGAGAGCAAAGCTTTGAAGTTTGTTAATGA
AACTGTTGATGGGATGATGTAGTCTGCCAGTCTGGTATAGTCTTAGTTGA
TTAGATGTTGGAGCTGTCTGGCCTTTTTACTTATTGATGCATGGTGGATA
CAGTGATTGGATTCTATCTCAGACC
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