CX294975

Overview
NameCX294975
Unique NameCX294975
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294975 vs. ExPASy Swiss-Prot
Match: ILVH_CYACA (Acetolactate synthase small subunit OS=Cyanidium caldarium GN=ilvH PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.256e-22
Identity = 53/100 (53.00%), Postives = 77/100 (77.00%), Query Frame = 3
Query:  285 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEV 578
            ++T+SV V DE+G++ RIAG+FARRG+NIESLAVG    K +   T+VV G +R + Q+ +QL KLVN++KV++I+  P VEREL+L+K+N  TS+ PE+
Sbjct:    2 KYTLSVLVEDEAGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTVEQLTKQLYKLVNILKVDNITEIPCVERELILVKINASTSSRPEI 101          
BLAST of CX294975 vs. ExPASy Swiss-Prot
Match: ILVH_GUITH (Acetolactate synthase small subunit OS=Guillardia theta GN=ilvH PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.799e-22
Identity = 56/94 (59.57%), Postives = 70/94 (74.47%), Query Frame = 3
Query:  285 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDT 560
            +HT+SV V DESG++ RIAG+FARRG+NIESLAVG      +   T+VV   ER + Q+ +QL KLVN++KVEDI+N P VERELMLIKL   T
Sbjct:    2 KHTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPTEKLGISRITMVVPSDERTIEQLTKQLYKLVNILKVEDITNLPTVERELMLIKLRVST 95          
BLAST of CX294975 vs. ExPASy Swiss-Prot
Match: ILVH_SYNY3 (Acetolactate synthase small subunit OS=Synechocystis sp. (strain PCC 6803) GN=ilvH PE=3 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 6.235e-22
Identity = 55/100 (55.00%), Postives = 73/100 (73.00%), Query Frame = 3
Query:  285 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGL--NVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEV 578
            +HT+SV V DE+G++ RIAG+FARRG+NIESLAVG     D +  T+VV G E  + Q+ +QL KLVNVIKV+DI+  P VERELML+K++ +     EV
Sbjct:    2 KHTLSVLVEDEAGVLTRIAGLFARRGFNIESLAVGSAEQGDVSRITMVVPGDENTIEQLTKQLYKLVNVIKVQDITETPCVERELMLVKVSANAPNRAEV 101          
BLAST of CX294975 vs. ExPASy Swiss-Prot
Match: ILVH_PORYE (Acetolactate synthase small subunit OS=Porphyra yezoensis GN=ilvH PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.536e-20
Identity = 50/99 (50.51%), Postives = 73/99 (73.74%), Query Frame = 3
Query:  285 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGL--NVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPE 575
            +HT+SV V DE+G+++RI+G+FARRG+NI SLAVG    +  +  T+VV G  R + Q+ +QL KLVN++ V+D++N P VERELMLIK+  ++ T  E
Sbjct:    2 KHTLSVLVQDEAGVLSRISGLFARRGFNIASLAVGPAEQIGVSRITMVVQGDNRTIEQLTKQLYKLVNILNVQDVTNIPSVERELMLIKIQINSQTRTE 100          
BLAST of CX294975 vs. ExPASy Swiss-Prot
Match: ILVH_GALSU (Acetolactate synthase small subunit OS=Galdieria sulphuraria GN=ilvH PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.536e-20
Identity = 51/91 (56.04%), Postives = 71/91 (78.02%), Query Frame = 3
Query:  285 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA---LFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKL 548
            +HT+SV V DESG++ RI+G+FARRG+NI+SLAVG   +KA     T+V+ G  R++ Q+ + L KLVNV+K++DI+N P VERELMLIK+
Sbjct:    2 KHTLSVLVEDESGVLTRISGLFARRGFNIDSLAVG-PAEKAGISRITMVIRGDNRIIEQITKHLYKLVNVLKIQDITNIPCVERELMLIKV 91          
BLAST of CX294975 vs. ExPASy Swiss-Prot
Match: ILVH_PORPU (Acetolactate synthase small subunit OS=Porphyra purpurea GN=ilvH PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.468e-20
Identity = 48/90 (53.33%), Postives = 69/90 (76.67%), Query Frame = 3
Query:  285 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGL--NVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKL 548
            +HT+SV V DE+G+++RI+G+FARRG+NI SLAVG    +  +  T+VV G  R + Q+ +QL KLVN++ V+D++N P VERELMLIK+
Sbjct:    2 KHTLSVLVQDEAGVLSRISGLFARRGFNIASLAVGPAEQIGVSRITMVVQGDNRTIEQLTKQLYKLVNILNVQDVTNIPSVERELMLIKI 91          
BLAST of CX294975 vs. ExPASy Swiss-Prot
Match: ILVH_MYCTU (Acetolactate synthase small subunit OS=Mycobacterium tuberculosis GN=ilvH PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.427e-19
Identity = 49/101 (48.51%), Postives = 69/101 (68.32%), Query Frame = 3
Query:  282 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV--DKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEV 578
            K HT+SV V D+ G++ R+A +F+RRG+NIESLAVG     D++  TIVVS  +  L Q+ +QLNKL+NVIK+ +  +E  V REL LIK+  D  +  +V
Sbjct:    4 KTHTLSVLVEDKPGVLARVAALFSRRGFNIESLAVGATECKDRSRMTIVVSAEDTPLEQITKQLNKLINVIKIVEQDDEHSVSRELALIKVQADAGSRSQV 104          
BLAST of CX294975 vs. ExPASy Swiss-Prot
Match: ILVH_MYCBO (Acetolactate synthase small subunit OS=Mycobacterium bovis GN=ilvH PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.427e-19
Identity = 49/101 (48.51%), Postives = 69/101 (68.32%), Query Frame = 3
Query:  282 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV--DKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEV 578
            K HT+SV V D+ G++ R+A +F+RRG+NIESLAVG     D++  TIVVS  +  L Q+ +QLNKL+NVIK+ +  +E  V REL LIK+  D  +  +V
Sbjct:    4 KTHTLSVLVEDKPGVLARVAALFSRRGFNIESLAVGATECKDRSRMTIVVSAEDTPLEQITKQLNKLINVIKIVEQDDEHSVSRELALIKVQADAGSRSQV 104          
BLAST of CX294975 vs. ExPASy Swiss-Prot
Match: ILVH_METJA (Probable acetolactate synthase small subunit OS=Methanocaldococcus jannaschii GN=ilvH PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.437e-18
Identity = 47/107 (43.93%), Postives = 72/107 (67.29%), Query Frame = 3
Query:  285 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGL--NVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEVTILYASL 599
            RH IS  V ++ G++ RI+G+F RRG+NI S+ VG+  N   +  TIVV+G +++L QV++QLNKL++VIKV ++  +  V+REL LIK+   T +     I Y S+
Sbjct:    8 RHVISALVLNKPGVLQRISGLFTRRGFNISSITVGITENPQISRVTIVVNGDDKILEQVIKQLNKLIDVIKVSELEEKKSVQRELCLIKIYAPTESAKSQVIQYTSI 114          
BLAST of CX294975 vs. ExPASy Swiss-Prot
Match: ILVH_MYCAV (Acetolactate synthase small subunit OS=Mycobacterium avium GN=ilvH PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.317e-18
Identity = 48/99 (48.48%), Postives = 66/99 (66.67%), Query Frame = 3
Query:  288 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEV 578
            HT+SV V  + G++ R+A +F+RRG+NIESLAVG    K +   TIVVS  E  L Q+ +QLNKL+NVIK+ ++ +   V REL LIK+  D  T  +V
Sbjct:    6 HTLSVLVEAKPGVLARVAALFSRRGFNIESLAVGATEQKDMSRMTIVVSAEETPLEQITKQLNKLINVIKIVELEDGNSVSRELALIKVRADAGTRSQV 104          
The following BLAST results are available for this feature:
BLAST of CX294975 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
ILVH_CYACA1.256e-2253.00Acetolactate synthase small subunit OS=Cyanidium c... [more]
ILVH_GUITH2.799e-2259.57Acetolactate synthase small subunit OS=Guillardia ... [more]
ILVH_SYNY36.235e-2255.00Acetolactate synthase small subunit OS=Synechocyst... [more]
ILVH_PORYE1.536e-2050.51Acetolactate synthase small subunit OS=Porphyra ye... [more]
ILVH_GALSU1.536e-2056.04Acetolactate synthase small subunit OS=Galdieria s... [more]
ILVH_PORPU4.468e-2053.33Acetolactate synthase small subunit OS=Porphyra pu... [more]
ILVH_MYCTU8.427e-1948.51Acetolactate synthase small subunit OS=Mycobacteri... [more]
ILVH_MYCBO8.427e-1948.51Acetolactate synthase small subunit OS=Mycobacteri... [more]
ILVH_METJA1.437e-1843.93Probable acetolactate synthase small subunit OS=Me... [more]
ILVH_MYCAV9.317e-1848.48Acetolactate synthase small subunit OS=Mycobacteri... [more]

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Properties
Property NameValue
Genbank descriptionC05065C02SK DroRLeaf1 Citrus clementina cDNA clone C05065C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294975 ID=CX294975; Name=CX294975; organism=Citrus clementina; type=EST; length=703bp
GAGGGTTGTTATGCTGCTGTCTGCTGTGAACTTCTCTCTGGCTAATAATA
ATGGCGGCTACTATGACGCCCTACCCGAAACTGAATTTGAGTCACTGTTT
TATCACCAAAAGCTGTGATTTTGTGCTGTTTTGGAGGCCACCATCGCAAG
GGAGGACTAGTTTCAGCAGTTCTGCTGAAGTCTCTTCAAAGAAACTCCAA
TTGGTCACTGCTAGCGGCAGCAGTTCTAACAATGCTCTCCCTGTTACTCA
GTCCGTGCCTCCTATCACTGCTTCCAAGGTGAAACGCCACACAATTTCAG
TGTTTGTTGGTGACGAGAGTGGAATAATAAACAGAATTGCTGGTGTTTTC
GCTAGGCGTGGTTACAACATTGAGTCCCTTGCTGTCGGTTTGAATGTGGA
CAAGGCTCTCTTTACCATAGTTGTGTCTGGAACTGAAAGGGTTTTGCGAC
AAGTTGTGGAACAACTTAACAAGCTTGTGAACGTCATAAAGGTAGAAGAC
ATCTCAAATGAGCCACATGTAGAGCGTGAACTGATGCTTATAAAACTTAA
TGGTGATACTAGTACCTGGCCTGAGGTAACAATTCTATATGCTTCTTTAT
GCATTCTTCATAAGAATAATTTAAATCACAAAATCAATCTTCTGGCAGAT
TCTATTCTGCAAAGGATTCTTCCGCCCTGAAAAGGAAGCTGTTCTAGTAA
TTG
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