CX294977

Overview
NameCX294977
Unique NameCX294977
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11140 contig Ccv1_Contig11140:400..1107. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX294977 vs. ExPASy Swiss-Prot
Match: CML49_ARATH (Probable calcium-binding protein CML49 OS=Arabidopsis thaliana GN=CML49 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.024e-13
Identity = 36/46 (78.26%), Postives = 39/46 (84.78%), Query Frame = 2 
Query:   29 HSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGELVF 166
            +SG IDDKELQGALSSYNQSFS+RTV LLMY FTN+N RKIG   F
Sbjct:  180 NSGFIDDKELQGALSSYNQSFSIRTVHLLMYLFTNSNVRKIGPKEF 225
[Close]
BLAST of CX294977 vs. ExPASy Swiss-Prot
Match: CML50_ARATH (Probable calcium-binding protein CML50 OS=Arabidopsis thaliana GN=CML50 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.223e-11
Identity = 35/49 (71.43%), Postives = 37/49 (75.51%), Query Frame = 2 
Query:   32 SGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGELVFLVNF 178
            SG IDDKELQGALSSY Q FS+RTV LLMY FTN+NA KIG   F   F
Sbjct:  200 SGFIDDKELQGALSSYQQRFSMRTVHLLMYLFTNSNAMKIGPKEFTALF 248
The following BLAST results are available for this feature:
BLAST of CX294977 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CML49_ARATH9.024e-1378.26Probable calcium-binding protein CML49 OS=Arabidop... [more]
CML50_ARATH2.223e-1171.43Probable calcium-binding protein CML50 OS=Arabidop... [more]
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Properties
Property NameValue
Genbank descriptionC05065C04SK DroRLeaf1 Citrus clementina cDNA clone C05065C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294977 ID=CX294977; Name=CX294977; organism=Citrus clementina; type=EST; length=702bp
GATTCGGCCGAGGGTTGGCCGACCGGGACACAGCGGCCTCATCGACGATA
AGGAGTTGCAAGGAGCCTTGTCTTCTTACAATCAGAGCTTCAGCTTGAGA
ACCGTTCGTCTGCTTATGTACACATTCACCAACACTAACGCGAGAAAAAT
CGGTGAGCTTGTTTTTTTGGTTAATTTTGAAATTCAATTTTATTTTTTCT
TTTGCATTTGCGCATGTTAGCAAATAAACTGGATAAATGCTGAAACGCGC
CATATGCAAGTCGAACTTCTGCACATTCCGGTTGCGTATACCGATTACGA
CACGTGGATAACATGTGGCTGATTCGTTCTATTAGAATGACTAAAACACC
CCTAGTAATGGCGTGGTTGGCTGTTGGGCGGTTAACTAGTTTTCACCAAT
TTGGATTTTACAATTGCCGTGGGACCACTTTAAGAATAAAGTGCAGCAGT
GTATGCCTTTATTATTAATTAATTTATGACGTGGTGTGCAATAAAGATTA
CAATTGTGGATTCTTCCATTGTTTATAGGAAATGGACCCCACGTGATCTG
TTTTTATAAATTCCTGACTGTAGATTTAGGGAGTAGATTTTTTTCTTGGG
CGGCTGGGATTTTTTTACGGCTGGCCCACATGTGGCGTAAGTTCTTTTTG
ACTTCTTCTTGCTATTTGGATACAGGGCCTAAGGAGTTCATCCAAGTGTT
TC
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