CX294978

Overview
NameCX294978
Unique NameCX294978
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294978 vs. ExPASy Swiss-Prot
Match: AB6I_ARATH (ABC transporter I family member 6, chloroplastic OS=Arabidopsis thaliana GN=ABCI6 PE=1 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 1.109e-85
Identity = 170/239 (71.13%), Postives = 197/239 (82.43%), Query Frame = 1
Query:    7 TLPALPLLCR-RSNYHRHHL---SLNRVTAALSAVDSPLKSSS---DGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPELGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALE 702
            T P+  LLC  R+N     +   +   V  + S+V S + S S   D  D    PLL+V  L AVIAES+QEILKGVNL+V EGEVHA+MGKNGSGKST SKVLVGHPDYEVT GS+VFKG+NLL+MEPE+RSLAGLFMSFQSPVEIPGV+N+DFL+MA+NAR+RKLGQPEL PI+FY++L  KLE ++MKTDFLNRNVNEGFSGGERKRNEILQLAVLGA+LAILDEIDSGLDVDAL+
Sbjct:   36 TSPSRVLLCNLRANSAAAPILRTTRRSVIVSASSVSSAVDSDSLVEDRDDVGRIPLLEVRDLRAVIAESRQEILKGVNLVVYEGEVHAVMGKNGSGKSTFSKVLVGHPDYEVTGGSIVFKGQNLLDMEPEDRSLAGLFMSFQSPVEIPGVSNMDFLNMAFNARKRKLGQPELDPIQFYSHLVSKLEVVNMKTDFLNRNVNEGFSGGERKRNEILQLAVLGAELAILDEIDSGLDVDALQ 274          
BLAST of CX294978 vs. ExPASy Swiss-Prot
Match: ABCX_CYAPA (Probable ATP-dependent transporter ycf16 OS=Cyanophora paradoxa GN=ycf16 PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 8.003e-60
Identity = 114/185 (61.62%), Postives = 144/185 (77.84%), Query Frame = 1
Query:  151 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPELGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALEM 705
            +L+V  L A +  +  EILKGVNL +N GE+HAIMG NGSGKST SK+L GHP Y+VT G ++FK +NLLE+EPEER+ AG+F++FQ P+EI GV+NIDFL +AYN RR++ G  EL P+ FY+ +  KL  + M   FLNRNVNEGFSGGE+KRNEILQ+A+L   LAILDE DSGLD+DAL +
Sbjct:    8 ILEVKNLKAQVDGT--EILKGVNLTINSGEIHAIMGPNGSGKSTFSKILAGHPAYQVTGGEILFKNKNLLELEPEERARAGVFLAFQYPIEIAGVSNIDFLRLAYNNRRKEEGLTELDPLTFYSIVKEKLNVVKMDPHFLNRNVNEGFSGGEKKRNEILQMALLNPSLAILDETDSGLDIDALRI 190          
BLAST of CX294978 vs. ExPASy Swiss-Prot
Match: Y075_SYNY3 (Probable ATP-dependent transporter slr0075 OS=Synechocystis sp. (strain PCC 6803) GN=slr0075 PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.574e-58
Identity = 109/188 (57.98%), Postives = 146/188 (77.66%), Query Frame = 1
Query:  142 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPELGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALEM 705
            SQ +L +  LTA +     +ILKGVNL +  GEVHAIMG+NGSGKSTLSKV+ GHPDYE+T G ++++G++L  +EP ER+LAG+F++FQ P+EIPGV+N+DFL +AYNA+R+ LG  EL   +F   +  KL+ + M   FL R++NEGFSGGE+KRNEILQ+A+L   L+ILDEIDSGLD+DAL +
Sbjct:    2 SQTILSIKNLTASV--DGNQILKGVNLEIKAGEVHAIMGRNGSGKSTLSKVITGHPDYEITGGEIIYQGQDLSALEPHERALAGIFLAFQYPLEIPGVSNLDFLRIAYNAKRKHLGLEELDTFDFEDLIQEKLDVVKMNPAFLERSLNEGFSGGEKKRNEILQMAILEPTLSILDEIDSGLDIDALRI 187          
BLAST of CX294978 vs. ExPASy Swiss-Prot
Match: ABCX_GUITH (Probable ATP-dependent transporter ycf16 OS=Guillardia theta GN=ycf16 PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.669e-57
Identity = 105/183 (57.38%), Postives = 141/183 (77.05%), Query Frame = 1
Query:  151 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPELGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDAL 699
            +L+VT L A + E K  I+KG+NL+VN GE+HAIMGKNGSGKST +K++ GHPDY +T G + ++  ++LE+ PE+R+  G+F+SFQ P+EIPGV N DFL +A NARR   G PE+ P+EF+ Y+  KL  + +K  FL R+VNEGFSGGE+KRNEILQ+++L   LA+LDE DSGLD+DAL
Sbjct:    5 ILEVTNLHAAVNEIK--IVKGLNLVVNAGEIHAIMGKNGSGKSTFAKIIAGHPDYTITNGDITYQHTSILELTPEDRAKRGIFLSFQYPIEIPGVTNADFLRLACNARRIYQGLPEMEPLEFFEYINSKLPLVDLKPSFLTRDVNEGFSGGEKKRNEILQMSILDTKLAVLDETDSGLDIDAL 185          
BLAST of CX294978 vs. ExPASy Swiss-Prot
Match: ABCX_PORYE (Probable ATP-dependent transporter ycf16 OS=Porphyra yezoensis GN=ycf16 PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.845e-56
Identity = 106/188 (56.38%), Postives = 144/188 (76.60%), Query Frame = 1
Query:  142 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPELGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALEM 705
            SQ +L++  L A + E+   ILKGVNL +  GE+HAIMG NGSGKSTLSKV+ GHP Y +  G ++F G+++LE+EP+ER+ AG+F++FQ PVEIPGV+N DFL +A NARR+  G  E  P+EF+  +  K++ + M+  FL RNVNEGFSGGE+KRNEILQ+A+L + ++ILDE DSGLD+DAL +
Sbjct:    2 SQTILEIKDLYASVGETT--ILKGVNLSIRAGEIHAIMGPNGSGKSTLSKVIAGHPAYSLISGDILFFGQSILEIEPDERAKAGIFLAFQYPVEIPGVSNSDFLRIALNARRKFQGLSEFSPLEFFQLITEKIDLVGMQESFLTRNVNEGFSGGEKKRNEILQMALLDSKISILDETDSGLDIDALRV 187          
BLAST of CX294978 vs. ExPASy Swiss-Prot
Match: ABCX_PORPU (Probable ATP-dependent transporter ycf16 OS=Porphyra purpurea GN=ycf16 PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.368e-56
Identity = 107/188 (56.91%), Postives = 144/188 (76.60%), Query Frame = 1
Query:  142 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPELGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALEM 705
            S  +L++  L A + +    ILKGVNL +  GE+HAIMG NGSGKSTLSKV+ GHP Y +  G ++F G ++L+MEP+ER+ AG+F++FQ PVEIPGV+N DFL +A NARR+    PEL P+EF+  +  K+  + MK  FL+RNVNEGFSGGE+KRNEILQ+A+L ++L+ILDE DSGLD+DAL++
Sbjct:    2 SDYILEIKDLHASVNDVP--ILKGVNLSIKPGEIHAIMGPNGSGKSTLSKVIAGHPAYSLLNGDILFYGRSILKMEPDERARAGIFLAFQYPVEIPGVSNADFLRIALNARRKFRELPELSPLEFFQLITEKINLVGMKESFLSRNVNEGFSGGEKKRNEILQMALLESNLSILDETDSGLDIDALKI 187          
BLAST of CX294978 vs. ExPASy Swiss-Prot
Match: ABCX_ODOSI (Probable ATP-dependent transporter ycf16 OS=Odontella sinensis GN=ycf16 PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.368e-56
Identity = 103/186 (55.38%), Postives = 145/186 (77.96%), Query Frame = 1
Query:  148 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPELGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALEM 705
            P+L++  L A I E+  EILK +NL +++GE+HAIMG NGSGKST SKVL GHP Y +  G ++FKG ++L ++PEERS  G+F++FQ P+EIPGV+N DFL +AYN++++ L + E+ PI F+  +  KL+ + M   FL+RNVNEGFSGGE+KRNEILQ+ +L ++L+ILDE DSGLD+DAL++
Sbjct:    6 PILEIKNLKACINEN--EILKDLNLKIHKGEIHAIMGPNGSGKSTFSKVLAGHPAYNILSGDILFKGSSILNLDPEERSHMGIFLAFQYPIEIPGVSNEDFLRLAYNSKQKFLNKDEVDPISFFTIINEKLKLVDMSPVFLSRNVNEGFSGGEKKRNEILQMILLDSELSILDETDSGLDIDALKI 189          
BLAST of CX294978 vs. ExPASy Swiss-Prot
Match: ABCX_ANTSP (Probable ATP-dependent transporter ycf16 OS=Antithamnion sp. GN=ycf16 PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.322e-54
Identity = 99/184 (53.80%), Postives = 141/184 (76.63%), Query Frame = 1
Query:  151 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPELGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALE 702
            LL +  L   I E+  +IL  +NL +  GE+HAIMGKNGSGKSTL+KV+ GHP Y++T G ++F+ +++ E+EPE+RS  G+F++FQ PVEIPGV N DFL +AYNA+R    + EL P+ F++++  K+  + + + FL+RNVNEGFSGGE+K+NEILQ+++L + LAILDE DSGLD+DAL+
Sbjct:    6 LLNIKNLDVTIGET--QILNSLNLSIKPGEIHAIMGKNGSGKSTLAKVIAGHPSYKITNGQILFENQDVTEIEPEDRSHLGIFLAFQYPVEIPGVTNADFLRIAYNAKRAFDNKEELDPLSFFSFIENKISNIDLNSTFLSRNVNEGFSGGEKKKNEILQMSLLNSKLAILDETDSGLDIDALK 187          
BLAST of CX294978 vs. ExPASy Swiss-Prot
Match: ABCX_GALSU (Probable ATP-dependent transporter ycf16 OS=Galdieria sulphuraria GN=ycf16 PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 7.255e-53
Identity = 100/188 (53.19%), Postives = 141/188 (75.00%), Query Frame = 1
Query:  139 KSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPELGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALE 702
            K + LLQ+  L   +A +++ IL G+NL VN+GE+HAIMG NGSGKSTLSKV+ GH  Y+V +G ++F+ +NLL    E+R+  G+F++FQ P+EI GVNNIDFL +AYN++ +   +  + P++F   +YPKL+ + +   FL R VNEGFSGGE+K+NEILQ+++L A LAILDE DSGLD+DAL+
Sbjct:    2 KHKSLLQIKNLHVKLANTEEYILNGINLNVNQGEIHAIMGPNGSGKSTLSKVIAGHSLYKVVKGEIIFQDQNLLNYTIEDRANLGIFLAFQYPLEIAGVNNIDFLRLAYNSKLKFNQRNPVDPLKFLEIVYPKLKLVGLDESFLYRKVNEGFSGGEKKKNEILQMSLLDAKLAILDETDSGLDIDALQ 189          
BLAST of CX294978 vs. ExPASy Swiss-Prot
Match: ABCX_CYACA (Probable ATP-dependent transporter ycf16 OS=Cyanidium caldarium GN=ycf16 PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.487e-47
Identity = 96/187 (51.34%), Postives = 125/187 (66.84%), Query Frame = 1
Query:  139 KSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPELGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDAL 699
            K   +L +  L A + E   E+L  +NL +   E H IMG NGSGKS+L KV+ GHP Y+V EG +  +  ++ +  PEERS  G+F+ FQ P+EI GVNN DFL   YN +R+K G  +L P+EF   L P L+ +SM   FL+RN+NEGFSGGE+KRNEILQ+ +    LAILDE DSGLD+DAL
Sbjct:    2 KETSVLTIQNLKACVNEF--EVLHNINLQIKTNETHVIMGPNGSGKSSLLKVIAGHPSYKVIEGKIFVENIDITQATPEERSNLGVFLGFQYPIEITGVNNADFLRAVYNQKRKKQGLKDLDPLEFLEILSPILDLVSMDQTFLHRNLNEGFSGGEKKRNEILQMILSKPRLAILDEPDSGLDIDAL 186          
The following BLAST results are available for this feature:
BLAST of CX294978 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
AB6I_ARATH1.109e-8571.13ABC transporter I family member 6, chloroplastic O... [more]
ABCX_CYAPA8.003e-6061.62Probable ATP-dependent transporter ycf16 OS=Cyanop... [more]
Y075_SYNY32.574e-5857.98Probable ATP-dependent transporter slr0075 OS=Syne... [more]
ABCX_GUITH1.669e-5757.38Probable ATP-dependent transporter ycf16 OS=Guilla... [more]
ABCX_PORYE1.845e-5656.38Probable ATP-dependent transporter ycf16 OS=Porphy... [more]
ABCX_PORPU5.368e-5656.91Probable ATP-dependent transporter ycf16 OS=Porphy... [more]
ABCX_ODOSI5.368e-5655.38Probable ATP-dependent transporter ycf16 OS=Odonte... [more]
ABCX_ANTSP1.322e-5453.80Probable ATP-dependent transporter ycf16 OS=Antith... [more]
ABCX_GALSU7.255e-5353.19Probable ATP-dependent transporter ycf16 OS=Galdie... [more]
ABCX_CYACA3.487e-4751.34Probable ATP-dependent transporter ycf16 OS=Cyanid... [more]

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Properties
Property NameValue
Genbank descriptionC05065C05SK DroRLeaf1 Citrus clementina cDNA clone C05065C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294978 ID=CX294978; Name=CX294978; organism=Citrus clementina; type=EST; length=728bp
GTGTTTACTCTTCCCGCCCTTCCCCTTCTCTGTCGCCGGTCAAACTACCA
TCGTCACCATCTATCTCTCAACCGCGTAACAGCTGCCCTCTCCGCCGTCG
ATTCTCCTTTGAAATCTTCCTCCGACGGTCAGGATGAGAAAAGCCAGCCT
CTGCTTCAAGTCACAGGCTTAACGGCCGTGATCGCAGAGTCCAAGCAGGA
AATTCTCAAGGGCGTCAATCTCTTGGTCAACGAAGGAGAGGTTCATGCGA
TCATGGGAAAGAACGGTTCTGGGAAGAGCACTCTTTCAAAGGTTCTGGTT
GGGCATCCGGATTATGAAGTGACAGAAGGGAGTGTCGTGTTTAAAGGGGA
GAATCTTCTAGAAATGGAGCCAGAAGAACGGTCACTTGCTGGCCTTTTTA
TGAGTTTCCAGTCTCCAGTTGAGATCCCGGGAGTCAACAATATTGACTTC
CTTCACATGGCTTATAATGCTCGTAGAAGAAAACTTGGTCAGCCTGAACT
TGGACCAATTGAGTTTTATGCTTACTTGTACCCTAAACTAGAACGGTTGA
GCATGAAGACTGACTTTCTTAATAGAAATGTCAATGAAGGATTTAGCGGT
GGTGAAAGGAAACGCAACGAAATTTTACAGCTTGCGGTTTTGGGAGCAGA
CTTGGCTATATTAGATGAAATCGATTCGGGGTTGGATGTTGATGCACTAG
AGATGTAGCAAAGCAGTGATGGGCTTTG
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