CX294979

Overview
NameCX294979
Unique NameCX294979
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length742
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX294979 vs. ExPASy Swiss-Prot
Match: TMVRN_NICGU (TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.794e-23
Identity = 79/232 (34.05%), Postives = 112/232 (48.28%), Query Frame = 2 
Query:   74 RLILLNLKDCRNLVSFPKNVCLMKSXXXXXXXXXXXXXXXPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSDFFRSLLLPNKNSDSMCLSFPRFT-GLSSLQTLDLSDCNLLEGAIPFDIGSLFSLEAIDLSGNNFVSLPSSLNQLLKLKIFCLERCRNLKSLPELPPEI--VFVGAEDCTSLETYL------LPQSKLDR*HGSNFFNASA 742
            +L+L N+K   NLV+ P ++C +KS               P+++G+++ L   D   T I + P SI++L  L I    G K                      D +   FP    GL SL+ L+LS CNL++G +P +IGSL SL+ +DLS NNF  LPSS+ QL  L+   L+ C+ L  LPELPPE+  + V          YL      L + KLD  H    +N  A
Sbjct:  740 KLLLWNMK---NLVALPSSICRLKSLVSLSVSGCSKLESLPEEIGDLDNLRVFDASDTLILRPPSSIIRLNKLIILMFRGFK----------------------DGVHFEFPPVAEGLHSLEYLNLSYCNLIDGGLPEEIGSLSSLKKLDLSRNNFEHLPSSIAQLGALQSLDLKDCQRLTQLPELPPELNELHVDCHMALKFIHYLVTKRKKLHRVKLDDAHNDTMYNLFA 946
The following BLAST results are available for this feature:
BLAST of CX294979 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TMVRN_NICGU2.794e-2334.05TMV resistance protein N OS=Nicotiana glutinosa GN... [more]
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Properties
Property NameValue
Genbank descriptionC05065C06SK DroRLeaf1 Citrus clementina cDNA clone C05065C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294979 ID=CX294979; Name=CX294979; organism=Citrus clementina; type=EST; length=742bp
GATTCGGCCGAGGCTGAATCTTGAAGGCTGTACAAGATTGCTCGAGGTTC
ACCAATCTGTTGGAACTCTTAAAAGACTAATTTTATTGAATTTAAAAGAC
TGCAGAAATCTTGTCAGCTTTCCAAAAAATGTCTGTCTTATGAAGTCTCT
AAAGATACTGTGTCTTTGTGGATGTTTAAAATTAGAGAAATTGCCTCAGG
ACTTGGGGGAAGTTGAGTGTTTGGAAGAACTAGATGTAGGTGGCACTGCA
ATAAGACAAATACCACCCTCCATTGTACAGTTGGTGAATCTCAAAATATT
CTCTCTCCATGGATGTAAAGGACAACCCCCCAAAATCTTGAGTTCAGATT
TCTTCCGTTCGTTGTTGTTGCCAAATAAAAATTCTGATTCCATGTGCTTG
TCCTTTCCTCGTTTCACTGGTTTAAGCTCTCTACAAACTTTAGACCTTAG
TGACTGCAATCTTTTGGAAGGAGCAATTCCTTTTGATATTGGCTCCTTAT
TCTCATTAGAAGCAATAGATTTAAGTGGGAACAATTTTGTCAGCCTACCA
TCTAGCTTAAACCAACTTTTAAAGCTTAAAATTTTTTGCTTGGAGAGATG
CCGGAATCTTAAATCGTTACCAGAGCTTCCACCAGAAATAGTTTTTGTTG
GGGCCGAAGACTGTACTTCTTTGGAAACATATCTATTACCCCAAAGTAAG
CTGGACCGCTGACATGGCTCTAATTTTTTCAATGCTTCAGCT
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