CX294980

Overview
NameCX294980
Unique NameCX294980
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294980 vs. ExPASy Swiss-Prot
Match: ATAD1_RAT (ATPase family AAA domain-containing protein 1 OS=Rattus norvegicus GN=Atad1 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.034e-49
Identity = 96/188 (51.06%), Postives = 130/188 (69.15%), Query Frame = 2
Query:   11 RIAKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAA 574
            R+ +P KG+LL+GPPG GKT++AKA A EAG  FIN+  S++T KW+GE +K   AVFSLA K+ PS+IF+DE+DS L R  +  +HEA   MK +FM  WDGL T  + +++V+ ATNRP DLD A++RR+P R  +N P    R  IL++IL  E++   VD   +A  TDG+SGSDLK +C  AA
Sbjct:  121 RLLQPPKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDSFL-RNRSSSDHEATAMMKAQFMSLWDGLDTDHSCQVIVMGATNRPQDLDSAIMRRMPTRFHINQPALKQREAILKLILKNENVDRHVDLLEVAQETDGFSGSDLKEMCRDAA 307          
BLAST of CX294980 vs. ExPASy Swiss-Prot
Match: ATAD1_MOUSE (ATPase family AAA domain-containing protein 1 OS=Mus musculus GN=Atad1 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.034e-49
Identity = 96/188 (51.06%), Postives = 130/188 (69.15%), Query Frame = 2
Query:   11 RIAKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAA 574
            R+ +P KG+LL+GPPG GKT++AKA A EAG  FIN+  S++T KW+GE +K   AVFSLA K+ PS+IF+DE+DS L R  +  +HEA   MK +FM  WDGL T  + +++V+ ATNRP DLD A++RR+P R  +N P    R  IL++IL  E++   VD   +A  TDG+SGSDLK +C  AA
Sbjct:  121 RLLQPPKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDSFL-RNRSSSDHEATAMMKAQFMSLWDGLDTDHSCQVIVMGATNRPQDLDSAIMRRMPTRFHINQPALKQREAILKLILKNENVDRHVDLLEVAQETDGFSGSDLKEMCRDAA 307          
BLAST of CX294980 vs. ExPASy Swiss-Prot
Match: ATAD1_HUMAN (ATPase family AAA domain-containing protein 1 OS=Homo sapiens GN=ATAD1 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.034e-49
Identity = 96/188 (51.06%), Postives = 130/188 (69.15%), Query Frame = 2
Query:   11 RIAKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAA 574
            R+ +P KG+LL+GPPG GKT++AKA A EAG  FIN+  S++T KW+GE +K   AVFSLA K+ PS+IF+DE+DS L R  +  +HEA   MK +FM  WDGL T  + +++V+ ATNRP DLD A++RR+P R  +N P    R  IL++IL  E++   VD   +A  TDG+SGSDLK +C  AA
Sbjct:  121 RLLQPPKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDSFL-RNRSSSDHEATAMMKAQFMSLWDGLDTDHSCQVIVMGATNRPQDLDSAIMRRMPTRFHINQPALKQREAILKLILKNENVDRHVDLLEVAQETDGFSGSDLKEMCRDAA 307          
BLAST of CX294980 vs. ExPASy Swiss-Prot
Match: SPAST_DROPS (Spastin OS=Drosophila pseudoobscura pseudoobscura GN=spas PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.351e-49
Identity = 103/190 (54.21%), Postives = 137/190 (72.11%), Query Frame = 2
Query:   23 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-RTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVD-FDAIANMTDGYSGSDLKNLCVTAAHRPI 586
            P KG+LLFGPPG GKT+LA+AVATE  A F+NIS +S+TSK+ G+GEK V+A+F++A  + PS+IF+DEVDS+L  R + GEHEA R++K EF+V +DGL    D +RI+VLAATNRP +LDEA +RR  +R+ V+LPD   R  +L  +L K+    D D    ++ +TDGYSGSDL  L   AA  PI
Sbjct:  545 PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHLQPSIIFIDEVDSLLSERSS-GEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTDALRRLSKITDGYSGSDLTALAKDAALEPI 733          
BLAST of CX294980 vs. ExPASy Swiss-Prot
Match: SPAST_DROPE (Spastin OS=Drosophila persimilis GN=spas PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.351e-49
Identity = 103/190 (54.21%), Postives = 137/190 (72.11%), Query Frame = 2
Query:   23 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-RTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVD-FDAIANMTDGYSGSDLKNLCVTAAHRPI 586
            P KG+LLFGPPG GKT+LA+AVATE  A F+NIS +S+TSK+ G+GEK V+A+F++A  + PS+IF+DEVDS+L  R + GEHEA R++K EF+V +DGL    D +RI+VLAATNRP +LDEA +RR  +R+ V+LPD   R  +L  +L K+    D D    ++ +TDGYSGSDL  L   AA  PI
Sbjct:  545 PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHLQPSIIFIDEVDSLLSERSS-GEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTDALRRLSKITDGYSGSDLTALAKDAALEPI 733          
BLAST of CX294980 vs. ExPASy Swiss-Prot
Match: ATD1B_DANRE (ATPase family AAA domain-containing protein 1-B OS=Danio rerio GN=atad1b PE=2 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 1.764e-49
Identity = 94/188 (50.00%), Postives = 130/188 (69.15%), Query Frame = 2
Query:   11 RIAKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAA 574
            R+ +P KG+LL+GPPG GKT++AKA A EAG  FIN+  S++T KW+GE +K   AVFSLA K+ PS+IF+DE+DS L R  +  +HEA   MK +FM  WDGL T    +++++ ATNRP DLD A++RR+P R  +N P+   R  IL++IL  E++   V+   IA  TDG+SGSDL+ +C  AA
Sbjct:  125 RLLQPPKGVLLYGPPGCGKTLIAKATAKEAGFRFINLQPSTLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDSFL-RNRSSSDHEATAMMKAQFMSLWDGLDTDYNCQVIIMGATNRPQDLDSAILRRMPTRFHINQPNVRQRKDILKLILENENVESAVELSEIAKQTDGFSGSDLREMCRDAA 311          
BLAST of CX294980 vs. ExPASy Swiss-Prot
Match: SPAST_IXOSC (Spastin OS=Ixodes scapularis GN=spas PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.703e-49
Identity = 102/190 (53.68%), Postives = 138/190 (72.63%), Query Frame = 2
Query:   23 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKED--LSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPI 586
            P KG+LLFGPPG GKTMLAKAVA E+ + F+NIS +S+TSK+ GEGEK V+A+F++A ++ PS+IF+DEVDS+L  R++  EHEA R++K EF+V +DGL T   ER+LV+ ATNRP +LD+A +RR  +R+ V LPD   R  +L+ +L K +  LS D     +A +T+GYSGSDL  L   AA  PI
Sbjct:  406 PPKGLLLFGPPGNGKTMLAKAVAHESNSTFLNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLSERKD-NEHEATRRLKTEFLVEFDGLHTGSEERVLVMGATNRPQELDDAALRRFTKRVYVTLPDHNTRVILLEKLLKKHNNPLSAD-KLKYLARLTEGYSGSDLTALAKDAALGPI 593          
BLAST of CX294980 vs. ExPASy Swiss-Prot
Match: SPAST_DANRE (Spastin OS=Danio rerio GN=spast PE=2 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 6.703e-49
Identity = 97/189 (51.32%), Postives = 138/189 (73.02%), Query Frame = 2
Query:   23 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK-EDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPI 586
            P +G+LLFGPPG GKTMLAKAVA E+ A F NIS +++TSK+ GEGEK V+A+F++A ++ PS+IF+DE+DS+L  R   GEH+A R++K EF++ +DG+++   ER+LV+ ATNRP +LDEAV+RR  +R+ V LP    R K+L+ +L+K  +     +   +A +TDGYSGSDL +L   AA  PI
Sbjct:  327 PARGLLLFGPPGNGKTMLAKAVAMESNATFFNISAATLTSKYVGEGEKLVRALFAVARELQPSIIFIDEIDSLLCERRE-GEHDASRRLKTEFLIEFDGVQSGGDERVLVMGATNRPQELDEAVLRRFAKRIYVALPTEETRLKLLKNLLSKHRNPLSQKELSQLARLTDGYSGSDLTSLAKDAALGPI 514          
BLAST of CX294980 vs. ExPASy Swiss-Prot
Match: FIGL1_CAEEL (Fidgetin-like protein 1 OS=Caenorhabditis elegans GN=figl-1 PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.703e-49
Identity = 100/193 (51.81%), Postives = 137/193 (70.98%), Query Frame = 2
Query:   14 IAKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVIL--AKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPI 586
            I  P KG+LLFGPPGTGKTM+ + VA++  A F NIS SS+TSKW GEGEK V+A+FS+A    PSVIF+DE+DS+L  R +  EHE+ R++K EF+V  DG+ T   ER+LVL ATNRP +LDEA  RR  +RL + LP+  +R +I+Q +L   + D++ + + + I  +TDGYSG+D++ LC  AA  PI
Sbjct:  345 IRAPPKGVLLFGPPGTGKTMIGRCVASQCKATFFNISASSLTSKWVGEGEKLVRALFSVARLKLPSVIFIDEIDSLLSSR-SESEHESSRRIKTEFLVQLDGVNTAPDERLLVLGATNRPQELDEAARRRFQKRLYIALPEPESRTQIVQNLLVGTRHDIT-NHNLERIRELTDGYSGADMRQLCTEAAMGPI 535          
BLAST of CX294980 vs. ExPASy Swiss-Prot
Match: FIGL1_CAEBR (Fidgetin-like protein 1 OS=Caenorhabditis briggsae GN=figl-1 PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.703e-49
Identity = 99/190 (52.11%), Postives = 137/190 (72.11%), Query Frame = 2
Query:   23 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVIL--AKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPI 586
            P KG+LLFGPPGTGKTM+ + VA++A A F NIS SS+TSKW GEGEK V+A+FS+A    PSVIF+DE+DS+L  R +  EHE+ R++K EF+V  DG+ T   ER+LVL ATNRP +LDEA  RR  +RL + LP+  +R +I++ +L   + +++ D + + I  +TDGYSG+D++ LC  AA  PI
Sbjct:  348 PPKGVLLFGPPGTGKTMIGRCVASQAQATFFNISASSLTSKWVGEGEKLVRALFSVARLKLPSVIFIDEIDSLLSAR-SESEHESSRRIKTEFLVQLDGVNTAPDERLLVLGATNRPQELDEAARRRFQKRLYIALPEPDSRTQIVENLLRGTRHEIT-DHNLEKIRRLTDGYSGADMRQLCTEAAMGPI 535          
The following BLAST results are available for this feature:
BLAST of CX294980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 391
Match NameE-valueIdentityDescription
ATAD1_RAT1.034e-4951.06ATPase family AAA domain-containing protein 1 OS=R... [more]
ATAD1_MOUSE1.034e-4951.06ATPase family AAA domain-containing protein 1 OS=M... [more]
ATAD1_HUMAN1.034e-4951.06ATPase family AAA domain-containing protein 1 OS=H... [more]
SPAST_DROPS1.351e-4954.21Spastin OS=Drosophila pseudoobscura pseudoobscura ... [more]
SPAST_DROPE1.351e-4954.21Spastin OS=Drosophila persimilis GN=spas PE=3 SV=1[more]
ATD1B_DANRE1.764e-4950.00ATPase family AAA domain-containing protein 1-B OS... [more]
SPAST_IXOSC6.703e-4953.68Spastin OS=Ixodes scapularis GN=spas PE=3 SV=1[more]
SPAST_DANRE6.703e-4951.32Spastin OS=Danio rerio GN=spast PE=2 SV=2[more]
FIGL1_CAEEL6.703e-4951.81Fidgetin-like protein 1 OS=Caenorhabditis elegans ... [more]
FIGL1_CAEBR6.703e-4952.11Fidgetin-like protein 1 OS=Caenorhabditis briggsae... [more]

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Properties
Property NameValue
Genbank descriptionC05065C07SK DroRLeaf1 Citrus clementina cDNA clone C05065C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294980 ID=CX294980; Name=CX294980; organism=Citrus clementina; type=EST; length=750bp
GATTCGGCCGAGGATTGCCAAGCCTTGTAAGGGCATACTTTTGTTTGGAC
CTCCTGGAACAGGGAAGACCATGCTCGCAAAAGCCGTTGCAACTGAAGCT
GGTGCAAATTTCATCAACATTTCAATGTCAAGTATCACATCTAAGTGGTT
TGGTGAGGGGGAGAAGTATGTGAAAGCTGTCTTCTCACTAGCAAGTAAAA
TTGCACCTAGTGTTATATTTGTTGATGAGGTTGATAGCATGTTGGGCCGG
AGAGAAAATCCAGGGGAGCATGAGGCCATGCGGAAGATGAAAAATGAATT
TATGGTGAACTGGGATGGCCTGCGGACAAAGGATACAGAACGAATTCTGG
TGCTTGCAGCCACAAATAGACCTTTTGACCTTGATGAAGCTGTCATTAGA
AGGCTTCCACGCAGGTTGATGGTAAATTTGCCAGATGCTCCTAATAGAGC
GAAGATACTACAGGTTATTTTGGCAAAGGAGGATTTGTCTCCTGATGTTG
ATTTTGATGCAATTGCAAACATGACAGATGGATATTCTGGAAGTGACCTT
AAGAATCTCTGTGTGACTGCGGCACACCGTCCGATTAAAGAGATATTGGA
AAAAGAAAAAAAGGAAAGAGCTGCTGCGATGGCAGAAGGTAAGCCTGCTC
CAGCTTTGAGTGGGTGTGCAGATATACGGCCTCTAAACATGGATGACTTT
AATATGCTCATGAGCGGGTATGCGCGAGTGTTTCATCCGAGTCGGTAACA
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