CX294982

Overview
NameCX294982
Unique NameCX294982
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294982 vs. ExPASy Swiss-Prot
Match: SBDS_BOVIN (Ribosome maturation protein SBDS OS=Bos taurus GN=SBDS PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.144e-52
Identity = 106/205 (51.71%), Postives = 146/205 (71.22%), Query Frame = 2
Query:    5 VEKDLDEVLQSHTVYSNVSKGILAKSKDLISAFGTDDQTKICLEILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVPEQNISSLMEKLDAWNASIVSKDNSGSQLSLICEMEPGLFRDCDTLLRNL---QGRLEILAVSVHAEGD 610
            VEKDLDEVLQ+H+V+ NVSKG +AK +DLISAFGTDDQT+IC +IL KGE+QV+ KER TQ    FRDIATIV  K VN ET+RPYT+ +IER M +IH++V PN S+K+QALEVI++L++   I+R+ MR+   +P      L EKL      ++  ++ G QL ++C ++PG FR+ D L++     +G LE+L++    EGD
Sbjct:   43 VEKDLDEVLQTHSVFVNVSKGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVNPETKRPYTVILIERAMKDIHYSVKPNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPVNEGKKLKEKLKPL-IKVIESEDYGQQLEIVCLIDPGCFREVDELIKKETKGKGSLEVLSLKDVEEGD 246          
BLAST of CX294982 vs. ExPASy Swiss-Prot
Match: SBDS_RAT (Ribosome maturation protein SBDS OS=Rattus norvegicus GN=Sbds PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.776e-52
Identity = 108/205 (52.68%), Postives = 146/205 (71.22%), Query Frame = 2
Query:    5 VEKDLDEVLQSHTVYSNVSKGILAKSKDLISAFGTDDQTKICLEILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVPEQNISSLMEKLDAWNASIVSKDNSGSQLSLICEMEPGLFRDCDTLLRNL---QGRLEILAVSVHAEGD 610
            VEKDLDEVLQ+H+V+ NVSKG +AK +DLISAFGTDDQT+IC +IL KGE+QV+ KER TQ    FRDIATIV  K VN ET+RPYT+ +IER M +IH++V PN S+K+QALEVI++L++   I+R+ MR+   +P      L EKL      + S+D S  QL ++C ++PG FR+ D L++     +G LE+L++    EGD
Sbjct:   43 VEKDLDEVLQTHSVFVNVSKGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVNPETKRPYTVILIERAMKDIHYSVKPNKSTKQQALEVIKQLKEKMKIERAHMRLRFLLPVNEGKKLKEKLKPLMKVVESEDYS-QQLEIVCLIDPGCFREIDELIKKETKGKGSLEVLSLKDVEEGD 246          
BLAST of CX294982 vs. ExPASy Swiss-Prot
Match: SBDS_MOUSE (Ribosome maturation protein SBDS OS=Mus musculus GN=Sbds PE=2 SV=4)

HSP 1 Score: 204.527 bits (519), Expect = 4.776e-52
Identity = 108/205 (52.68%), Postives = 146/205 (71.22%), Query Frame = 2
Query:    5 VEKDLDEVLQSHTVYSNVSKGILAKSKDLISAFGTDDQTKICLEILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVPEQNISSLMEKLDAWNASIVSKDNSGSQLSLICEMEPGLFRDCDTLLRNL---QGRLEILAVSVHAEGD 610
            VEKDLDEVLQ+H+V+ NVSKG +AK +DLISAFGTDDQT+IC +IL KGE+QV+ KER TQ    FRDIATIV  K VN ET+RPYT+ +IER M +IH++V PN S+K+QALEVI++L++   I+R+ MR+   +P      L EKL      + S+D S  QL ++C ++PG FR+ D L++     +G LE+L++    EGD
Sbjct:   43 VEKDLDEVLQTHSVFVNVSKGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVNPETKRPYTVILIERAMKDIHYSVKPNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPVNEGKKLKEKLKPLMKVVESEDYS-QQLEIVCLIDPGCFREIDELIKKETKGRGSLEVLSLKDVEEGD 246          
BLAST of CX294982 vs. ExPASy Swiss-Prot
Match: SBDS_CHICK (Ribosome maturation protein SBDS OS=Gallus gallus GN=SBDS PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 8.146e-52
Identity = 105/208 (50.48%), Postives = 147/208 (70.67%), Query Frame = 2
Query:    8 EKDLDEVLQSHTVYSNVSKGILAKSKDLISAFGTDDQTKICLEILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVPEQNISSLMEKLDAWNASIVSKDNSGSQLSLICEMEPGLFRDCDTLLRNL---QGRLEILAVSVHAEGDTSVD 622
            EKD+DEVLQ+HTV+ NVSKG +AK +DL+ AFGTDDQT+IC  IL KGELQV+ KER+TQ    FRDIATIV  K VN ET+RPYT+ +IER M +IH++V PN S+K+QALEVIR+L++   I+R+ MR+   +P +    L EKL      ++  ++   QL ++C ++PG FR+ D L+R+    +G LE+L++    EGD  ++
Sbjct:   44 EKDIDEVLQTHTVFVNVSKGQVAKKEDLVRAFGTDDQTEICKVILSKGELQVSDKERQTQLEQMFRDIATIVADKCVNPETKRPYTVILIERAMKDIHYSVKPNKSTKQQALEVIRQLKETMQIERAHMRLRFILPVKEGKKLKEKLKPL-IKVIENEDFHDQLEIVCLIDPGCFREIDELIRSETKGKGTLEVLSLKDVEEGDEKLE 250          
BLAST of CX294982 vs. ExPASy Swiss-Prot
Match: SBDS_PONAB (Ribosome maturation protein SBDS OS=Pongo abelii GN=SBDS PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.043e-51
Identity = 105/205 (51.22%), Postives = 144/205 (70.24%), Query Frame = 2
Query:    5 VEKDLDEVLQSHTVYSNVSKGILAKSKDLISAFGTDDQTKICLEILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVPEQNISSLMEKLDAWNASIVSKDNSGSQLSLICEMEPGLFRDCDTLLRNL---QGRLEILAVSVHAEGD 610
            VEKDLDEVLQ+H+V+ NVSKG +AK +DLISAFGTDDQT+IC +IL KGE+QV+ KER TQ    FRDIATIV  K VN ET+RPYT+ +IER M +IH++V  N S+K+QALEVI++L++   I+R+ MR+   +P      L EKL      ++  ++ G QL ++C ++PG FR+ D L++     +G LE+L +    EGD
Sbjct:   43 VEKDLDEVLQTHSVFVNVSKGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVNPETKRPYTVILIERAMKDIHYSVKTNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPVNEGKKLKEKLKPL-IKVIESEDYGQQLEIVCLIDPGCFREIDELIKKETKGKGSLEVLNLKDVEEGD 246          
BLAST of CX294982 vs. ExPASy Swiss-Prot
Match: SBDS_HUMAN (Ribosome maturation protein SBDS OS=Homo sapiens GN=SBDS PE=1 SV=4)

HSP 1 Score: 201.445 bits (511), Expect = 4.043e-51
Identity = 105/205 (51.22%), Postives = 144/205 (70.24%), Query Frame = 2
Query:    5 VEKDLDEVLQSHTVYSNVSKGILAKSKDLISAFGTDDQTKICLEILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVPEQNISSLMEKLDAWNASIVSKDNSGSQLSLICEMEPGLFRDCDTLLRNL---QGRLEILAVSVHAEGD 610
            VEKDLDEVLQ+H+V+ NVSKG +AK +DLISAFGTDDQT+IC +IL KGE+QV+ KER TQ    FRDIATIV  K VN ET+RPYT+ +IER M +IH++V  N S+K+QALEVI++L++   I+R+ MR+   +P      L EKL      ++  ++ G QL ++C ++PG FR+ D L++     +G LE+L +    EGD
Sbjct:   43 VEKDLDEVLQTHSVFVNVSKGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVNPETKRPYTVILIERAMKDIHYSVKTNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPVNEGKKLKEKLKPL-IKVIESEDYGQQLEIVCLIDPGCFREIDELIKKETKGKGSLEVLNLKDVEEGD 246          
BLAST of CX294982 vs. ExPASy Swiss-Prot
Match: SBDS_XENLA (Ribosome maturation protein SBDS OS=Xenopus laevis GN=sbds PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.430e-49
Identity = 103/204 (50.49%), Postives = 143/204 (70.10%), Query Frame = 2
Query:    8 EKDLDEVLQSHTVYSNVSKGILAKSKDLISAFGTDDQTKICLEILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVPEQNISSLMEKLDAWNASIVSKDNSGSQLSLICEMEPGLFRDCDTLLR---NLQGRLEILAVSVHAEGD 610
            EKDLDEVLQ+H+V+ NVSKG  AK +DL+ AFGT+DQT+IC +IL KGELQV+ KER TQ    FRDIATIV  K VN ET+RPYT+++IER M +IH++V    S+K+QAL+VI++L++   I+R+ MR+   VP ++   L EKL      I S +N   +L ++C ++PG FR+ D L+R     +G LE+L++    EGD
Sbjct:   44 EKDLDEVLQTHSVFMNVSKGQGAKKEDLLKAFGTEDQTEICKQILSKGELQVSEKERSTQLEQMFRDIATIVADKCVNPETKRPYTVNLIERAMKDIHYSVKATKSTKQQALDVIKQLKETMQIERAHMRLRFIVPAKDGKKLKEKLKPLIKHIES-ENFDQELEIVCLIDPGCFREIDELIRCETKGKGTLEVLSLKDVEEGD 246          
BLAST of CX294982 vs. ExPASy Swiss-Prot
Match: SBDS_DICDI (Ribosome maturation protein SBDS OS=Dictyostelium discoideum GN=sbds PE=3 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 3.203e-48
Identity = 94/211 (44.55%), Postives = 150/211 (71.09%), Query Frame = 2
Query:    2 QVEKDLDEVLQSHTVYSNVSKGILAKSKDLISAFGTDDQTKICLEILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVPEQNISSL-MEKLDAWNASIVSKDNSGSQLSLICEMEPGLFRDCDTLLRNL---QGRLEILAVSVHAEGDTSVD 622
            ++EKDL+EV+Q H +++NVSKGI+AK  +LI AFGTD++ +I L ILEKGELQV+ KER+ Q    F+DIATIV +K VN+ETQRP  +S+IE+ M ++H+++ P  SSK+Q+LEVI+++    PI+R+ MR+ +T+P +   +L  +KL    + I  +D  G  LS++C ++PG +R  D L++     +G ++I+ ++V  EG+T ++
Sbjct:   42 KIEKDLNEVIQIHRIFTNVSKGIIAKKDELIKAFGTDNEQEIILLILEKGELQVSSKERDNQSEQTFKDIATIVAEKCVNTETQRPIPVSIIEKAMKDVHYSIHPTKSSKQQSLEVIKQISSVIPIQRAQMRLNITIPTKESKTLNRDKLMVLVSKIEEEDRDGGGLSIVCLVDPGSYRKIDELIKQETKGKGFIDIINLAVAKEGETKIN 252          
BLAST of CX294982 vs. ExPASy Swiss-Prot
Match: SBDS_XENTR (Ribosome maturation protein SBDS OS=Xenopus tropicalis GN=sbds PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.076e-47
Identity = 98/204 (48.04%), Postives = 141/204 (69.12%), Query Frame = 2
Query:    8 EKDLDEVLQSHTVYSNVSKGILAKSKDLISAFGTDDQTKICLEILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVPEQNISSLMEKLDAWNASIVSKDNSGSQLSLICEMEPGLFRDCDTLLR---NLQGRLEILAVSVHAEGD 610
            EKDLDEVLQ+H+V+ NVSKG +AK +DL+ +FGT+D T+IC +IL KGELQV+ KER TQ    FRDIATIV  K VN ET+RPYT+++IER M +IH++V    S+K+QAL+VI++L++   I+R+ MR+   +P ++   L EKL          +N   +L ++C ++PG FR+ D L+R     +G LE+L++    EGD
Sbjct:   44 EKDLDEVLQTHSVFMNVSKGQVAKKEDLLKSFGTEDPTEICKQILSKGELQVSEKERSTQLEQMFRDIATIVADKCVNPETKRPYTVNLIERAMKDIHYSVKATKSTKQQALDVIKQLKETMQIERAHMRLRFILPAKDGKKLKEKLKPL-IKHTESENFDQELEIVCLIDPGCFREIDELIRCETKGKGTLEVLSLKDVEEGD 246          
BLAST of CX294982 vs. ExPASy Swiss-Prot
Match: SBDS_CAEEL (Ribosome maturation protein SBDS OS=Caenorhabditis elegans GN=sbds-1 PE=2 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.882e-40
Identity = 85/207 (41.06%), Postives = 135/207 (65.22%), Query Frame = 2
Query:    8 EKDLDEVLQSHTVYSNVSKGILAKSKDLISAFGTDDQTKICLEILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVPEQNISSLMEKLDAWNASIVSKDNSGSQLSLICEMEPGLFRDCDTLLRNL---QGRLEILAVSVHAEGDTSV 619
            EKD+DEVLQ+HTV+SNVSKG L+K ++LI+AFG +DQ +IC  IL+KG+LQV+ KER+       ++++ ++    VN ET+RP   S+I++ + E+HF++ PN SSK+QAL+ I +L++   I+R+ M++ + +P +   S+  KL    + +   D     L ++  +EPG FR  D L+RN     GRLEIL++    EG+  +
Sbjct:   46 EKDIDEVLQTHTVFSNVSKGQLSKKEELIAAFGIEDQLEICKIILDKGDLQVSEKERQAASDQSLKEVSQLIASMVVNPETKRPVPPSVIDKALQEMHFSLKPNRSSKQQALDAIPKLRETLKIERAKMKIRVAIPTKEAKSVHTKLKTLFSDVEVDDWQDGSLEMVGLIEPGSFRALDDLVRNETKGHGRLEILSLKDVVEGELQI 252          
The following BLAST results are available for this feature:
BLAST of CX294982 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
SBDS_BOVIN2.144e-5251.71Ribosome maturation protein SBDS OS=Bos taurus GN=... [more]
SBDS_RAT4.776e-5252.68Ribosome maturation protein SBDS OS=Rattus norvegi... [more]
SBDS_MOUSE4.776e-5252.68Ribosome maturation protein SBDS OS=Mus musculus G... [more]
SBDS_CHICK8.146e-5250.48Ribosome maturation protein SBDS OS=Gallus gallus ... [more]
SBDS_PONAB4.043e-5151.22Ribosome maturation protein SBDS OS=Pongo abelii G... [more]
SBDS_HUMAN4.043e-5151.22Ribosome maturation protein SBDS OS=Homo sapiens G... [more]
SBDS_XENLA8.430e-4950.49Ribosome maturation protein SBDS OS=Xenopus laevis... [more]
SBDS_DICDI3.203e-4844.55Ribosome maturation protein SBDS OS=Dictyostelium ... [more]
SBDS_XENTR2.076e-4748.04Ribosome maturation protein SBDS OS=Xenopus tropic... [more]
SBDS_CAEEL1.882e-4041.06Ribosome maturation protein SBDS OS=Caenorhabditis... [more]

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Properties
Property NameValue
Genbank descriptionC05065C09SK DroRLeaf1 Citrus clementina cDNA clone C05065C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294982 ID=CX294982; Name=CX294982; organism=Citrus clementina; type=EST; length=734bp
CCAAGTAGAGAAAGATTTGGATGAAGTATTGCAGTCGCACACTGTTTATT
CGAATGTGTCAAAAGGAATTCTCGCGAAGTCAAAGGATTTGATTTCAGCA
TTTGGTACTGATGATCAAACAAAAATATGTTTGGAGATTTTGGAGAAAGG
GGAGCTTCAAGTTGCTGGAAAGGAGAGGGAAACGCAGTTCTCTAATCAGT
TTCGGGATATTGCAACCATTGTTATGCAGAAGACTGTTAATTCTGAAACT
CAACGTCCTTACACTATTAGTATGATTGAGCGACTTATGCACGAAATTCA
TTTTGCTGTTGACCCTAATAGCAGCTCGAAGAAGCAGGCATTGGAAGTCA
TTCGTGAGCTTCAAAAGCATTTCCCAATAAAAAGGTCTCCAATGAGGGTG
GGACTTACTGTTCCAGAGCAAAATATTTCTTCTTTAATGGAGAAACTAGA
TGCATGGAATGCTAGCATTGTCTCCAAAGATAATTCTGGAAGTCAGCTGT
CTCTCATTTGTGAAATGGAGCCAGGTCTTTTTCGGGATTGTGATACCCTA
CTGAGGAATCTGCAGGGCAGGTTGGAAATTCTTGCAGTGTCAGTGCATGC
AGAGGGGGATACAAGTGTGGATCACTACGATGATCATGAGGATGTGCCAT
CACTCCCACCCAAGGATCTGCTGATGATGTTCTCAAACTTAGTGAGAAAA
TTGAAAACAGTCTCTCTCTTCTGGAAATGGGATA
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