CX294988

Overview
NameCX294988
Unique NameCX294988
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12808 contig Ccv1_Contig12808:830..1545. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294988 vs. ExPASy Swiss-Prot
Match: AFC2_ARATH (Serine/threonine-protein kinase AFC2 OS=Arabidopsis thaliana GN=AFC2 PE=1 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.847e-59
Identity = 104/127 (81.89%), Postives = 121/127 (95.28%), Query Frame = 3
Query:    3 PCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPQHMLKRVDRHAEKYVRRGGRLDWPEGAASRESIKSVMKLPRLQNLIMQHVDHSAGDLTHLLQGLLRYDPTDRLTAREALRHPFFTR 383
            PCD+WSVGCI+VELCTGEALFQTHENLEHLAMMERVLGP PQ MLK+VDRH+EKYVRR GRLDWP+GA SR+S+K+V+KLPRLQNLIMQHVDHSAG+L +++QGLLR+DP++R+TAREALRHPFF R
Sbjct:  300 PCDVWSVGCIIVELCTGEALFQTHENLEHLAMMERVLGPFPQQMLKKVDRHSEKYVRR-GRLDWPDGATSRDSLKAVLKLPRLQNLIMQHVDHSAGELINMVQGLLRFDPSERITAREALRHPFFAR 425          
BLAST of CX294988 vs. ExPASy Swiss-Prot
Match: AFC1_ARATH (Serine/threonine-protein kinase AFC1 OS=Arabidopsis thaliana GN=AFC1 PE=2 SV=2)

HSP 1 Score: 223.402 bits (568), Expect = 9.477e-58
Identity = 103/127 (81.10%), Postives = 113/127 (88.98%), Query Frame = 3
Query:    3 PCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPQHMLKRVDRHAEKYVRRGGRLDWPEGAASRESIKSVMKLPRLQNLIMQHVDHSAGDLTHLLQGLLRYDPTDRLTAREALRHPFFTR 383
            PCD+WS+GCILVELC+GEALFQTHENLEHLAMMERVLGPLP HM+ R DR +EKY RRG +LDWPEGA SR+S+K+V KLPRL NLIMQHVDHSAGDL  LLQGLLRYDPT+R  AREAL HPFFTR
Sbjct:  319 PCDLWSIGCILVELCSGEALFQTHENLEHLAMMERVLGPLPPHMVLRADRRSEKYFRRGAKLDWPEGATSRDSLKAVWKLPRLPNLIMQHVDHSAGDLIDLLQGLLRYDPTERFKAREALNHPFFTR 445          
BLAST of CX294988 vs. ExPASy Swiss-Prot
Match: AFC3_ARATH (Serine/threonine-protein kinase AFC3 OS=Arabidopsis thaliana GN=AFC3 PE=2 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 1.419e-45
Identity = 83/124 (66.94%), Postives = 102/124 (82.26%), Query Frame = 3
Query:    6 CDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPQHMLKRVDRHAEKYVRRGGRLDWPEGAASRESIKSVMKLPRLQNLIMQHVDHSAGDLTHLLQGLLRYDPTDRLTAREALRHPFF 377
            CD+WS+GCIL ELCTGEALFQTH+NLEHLAMMER LGPLP+HM ++  R AEKY RRG RL+WPEGA SRESI++V +L RL++++ +HVD++      LL GLL YDP++RLTA EAL HPFF
Sbjct:  273 CDLWSIGCILFELCTGEALFQTHDNLEHLAMMERALGPLPEHMTRKASRGAEKYFRRGCRLNWPEGANSRESIRAVKRLDRLKDMVSKHVDNTRSRFADLLYGLLAYDPSERLTANEALDHPFF 396          
BLAST of CX294988 vs. ExPASy Swiss-Prot
Match: LKH1_SCHPO (Dual specificity protein kinase lkh1 OS=Schizosaccharomyces pombe GN=lkh1 PE=1 SV=3)

HSP 1 Score: 118.242 bits (295), Expect = 4.294e-26
Identity = 57/127 (44.88%), Postives = 84/127 (66.14%), Query Frame = 3
Query:    3 PCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPQHMLKRVDRHAEKYVRRGGRLDWPEGAASRESIKSVMKLPRLQNLIMQHVDHSAGDLTHLLQGLLRYDPTDRLTAREALRHPFFTR 383
            PCD+WS+GCILVEL TG+ALFQTHE+ EHL MME++LGP  ++M+ R  R ++++ +  G++ +P     ++SI  +  L  L+ +        A  L  LL+ +  YDP  R+TA+EAL HPFFT+
Sbjct:  559 PCDVWSIGCILVELFTGQALFQTHEDSEHLCMMEKILGPFDRNMISRSSRTSQRFFKSDGKVRYPLSNTPKKSINYLQSLQTLEQIFAVSSPEVA-LLLDLLKKVFVYDPKRRITAKEALWHPFFTQ 684          
BLAST of CX294988 vs. ExPASy Swiss-Prot
Match: CLK1_HUMAN (Dual specificity protein kinase CLK1 OS=Homo sapiens GN=CLK1 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.131e-25
Identity = 58/125 (46.40%), Postives = 82/125 (65.60%), Query Frame = 3
Query:    3 PCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPQHMLKRVDRHAEKYVRRGGRLDWPEGAASRESIKSVMKLPRLQNLIMQHVDHSAGDLTHLLQGLLRYDPTDRLTAREALRHPFF 377
            PCD+WS+GCIL+E   G  +F TH++ EHLAMMER+LGPLP+HM+++  +   KY     RLDW E +++   +    K P  + ++ Q V+H    L  L+Q +L YDP  R+T REAL+HPFF
Sbjct:  359 PCDVWSIGCILIEYYLGFTVFPTHDSKEHLAMMERILGPLPKHMIQKTRK--RKYFHH-DRLDWDEHSSAGRYVSRRCK-PLKEFMLSQDVEHER--LFDLIQKMLEYDPAKRITLREALKHPFF 477          
BLAST of CX294988 vs. ExPASy Swiss-Prot
Match: CLK2_HUMAN (Dual specificity protein kinase CLK2 OS=Homo sapiens GN=CLK2 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.635e-25
Identity = 58/127 (45.67%), Postives = 81/127 (63.78%), Query Frame = 3
Query:    3 PCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPQHMLKRVDRHAEKYVRRGGRLDWPEGAASRESIKSVMKLPRLQNLIMQHVDHSAGDLTHLLQGLLRYDPTDRLTAREALRHPFFTR 383
            PCD+WS+GCI+ E   G  LFQTH+N EHLAMMER+LGP+P  M+++  +  +KY  R GRLDW E  ++   ++   K P  + L  +  +H    L  L++ +L Y+P  RLT  EAL+HPFF R
Sbjct:  361 PCDVWSIGCIIFEYYVGFTLFQTHDNREHLAMMERILGPIPSRMIRKTRK--QKYFYR-GRLDWDENTSAGRYVRENCK-PLRRYLTSEAEEHH--QLFDLIESMLEYEPAKRLTLGEALQHPFFAR 481          
BLAST of CX294988 vs. ExPASy Swiss-Prot
Match: CLK2_MOUSE (Dual specificity protein kinase CLK2 OS=Mus musculus GN=Clk2 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.200e-25
Identity = 58/125 (46.40%), Postives = 80/125 (64.00%), Query Frame = 3
Query:    3 PCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPQHMLKRVDRHAEKYVRRGGRLDWPEGAASRESIKSVMKLPRLQNLIMQHVDHSAGDLTHLLQGLLRYDPTDRLTAREALRHPFF 377
            PCD+WS+GCI+ E   G  LFQTH+N EHLAMMER+LGP+P  M+++  +  +KY  R GRLDW E  ++   ++   K P  + L  +  DH    L  L++ +L Y+P  RLT  EAL+HPFF
Sbjct:  360 PCDVWSIGCIIFEYYVGFTLFQTHDNREHLAMMERILGPVPSRMIRKTRK--QKYFYR-GRLDWDENTSAGRYVRENCK-PLRRYLTSEAEDHH--QLFDLIENMLEYEPAKRLTLGEALQHPFF 478          
BLAST of CX294988 vs. ExPASy Swiss-Prot
Match: CLK4_HUMAN (Dual specificity protein kinase CLK4 OS=Homo sapiens GN=CLK4 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.077e-24
Identity = 56/125 (44.80%), Postives = 82/125 (65.60%), Query Frame = 3
Query:    3 PCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPQHMLKRVDRHAEKYVRRGGRLDWPEGAASRESIKSVMKLPRLQNLIMQHVDHSAGDLTHLLQGLLRYDPTDRLTAREALRHPFF 377
            PCD+WS+GCIL+E   G  +FQTH++ EHLAMMER+LGP+PQHM+++  +   KY     +LDW E +++   ++   K   L+  ++ H D     L  L++ +L YDPT R+T  EAL+HPFF
Sbjct:  357 PCDVWSIGCILIEYYLGFTVFQTHDSKEHLAMMERILGPIPQHMIQKTRK--RKYFHH-NQLDWDEHSSAGRYVRRRCK--PLKEFMLCH-DEEHEKLFDLVRRMLEYDPTQRITLDEALQHPFF 475          
BLAST of CX294988 vs. ExPASy Swiss-Prot
Match: CLK3_RAT (Dual specificity protein kinase CLK3 OS=Rattus norvegicus GN=Clk3 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 8.953e-24
Identity = 56/125 (44.80%), Postives = 77/125 (61.60%), Query Frame = 3
Query:    3 PCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPQHMLKRVDRHAEKYVRRGGRLDWPEGAASRESIKSVMKLPRLQNLIMQHVDHSAGDLTHLLQGLLRYDPTDRLTAREALRHPFF 377
            PCD+WS+GCIL E   G  LFQTHEN EHL MME++LGP+P HM+ R  +  +KY  +GG L W E ++    +K   K P    ++   ++H    L  L++ +L +DP  R+T  EAL HPFF
Sbjct:  354 PCDVWSIGCILFEYYRGFTLFQTHENREHLVMMEKILGPIPSHMIHRTRK--QKYFYKGG-LVWDENSSDGRYVKENCK-PLKSYMLQDSLEHV--QLFDLMRRMLEFDPAQRITLAEALLHPFF 472          
BLAST of CX294988 vs. ExPASy Swiss-Prot
Match: CLK3_MOUSE (Dual specificity protein kinase CLK3 OS=Mus musculus GN=Clk3 PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 8.953e-24
Identity = 56/125 (44.80%), Postives = 77/125 (61.60%), Query Frame = 3
Query:    3 PCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPQHMLKRVDRHAEKYVRRGGRLDWPEGAASRESIKSVMKLPRLQNLIMQHVDHSAGDLTHLLQGLLRYDPTDRLTAREALRHPFF 377
            PCD+WS+GCIL E   G  LFQTHEN EHL MME++LGP+P HM+ R  +  +KY  +GG L W E ++    +K   K P    ++   ++H    L  L++ +L +DP  R+T  EAL HPFF
Sbjct:  502 PCDVWSIGCILFEYYRGFTLFQTHENREHLVMMEKILGPIPSHMIHRTRK--QKYFYKGG-LVWDENSSDGRYVKENCK-PLKSYMLQDSLEHV--QLFDLMRRMLEFDPAQRITLAEALLHPFF 620          
The following BLAST results are available for this feature:
BLAST of CX294988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
AFC2_ARATH3.847e-5981.89Serine/threonine-protein kinase AFC2 OS=Arabidopsi... [more]
AFC1_ARATH9.477e-5881.10Serine/threonine-protein kinase AFC1 OS=Arabidopsi... [more]
AFC3_ARATH1.419e-4566.94Serine/threonine-protein kinase AFC3 OS=Arabidopsi... [more]
LKH1_SCHPO4.294e-2644.88Dual specificity protein kinase lkh1 OS=Schizosacc... [more]
CLK1_HUMAN2.131e-2546.40Dual specificity protein kinase CLK1 OS=Homo sapie... [more]
CLK2_HUMAN3.635e-2545.67Dual specificity protein kinase CLK2 OS=Homo sapie... [more]
CLK2_MOUSE6.200e-2546.40Dual specificity protein kinase CLK2 OS=Mus muscul... [more]
CLK4_HUMAN3.077e-2444.80Dual specificity protein kinase CLK4 OS=Homo sapie... [more]
CLK3_RAT8.953e-2444.80Dual specificity protein kinase CLK3 OS=Rattus nor... [more]
CLK3_MOUSE8.953e-2444.80Dual specificity protein kinase CLK3 OS=Mus muscul... [more]

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Properties
Property NameValue
Genbank descriptionC05065D03SK DroRLeaf1 Citrus clementina cDNA clone C05065D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294988 ID=CX294988; Name=CX294988; organism=Citrus clementina; type=EST; length=716bp
TCCCATGTGATATATGGAGTGTTGGTTGTATCTTAGTGGAGTTATGCACG
GGTGAGGCATTATTCCAAACTCATGAGAACTTGGAACACCTTGCGATGAT
GGAACGGGTGCTTGGTCCCTTGCCTCAACATATGCTGAAGAGAGTAGACC
GACATGCAGAGAAGTATGTTAGAAGGGGGGGTAGGTTGGACTGGCCAGAA
GGTGCAGCCTCTAGGGAAAGTATTAAATCTGTGATGAAGCTACCTCGTCT
TCAGAACCTAATAATGCAGCACGTTGACCATTCAGCTGGTGATCTTACAC
ATTTATTGCAAGGACTGCTTAGGTATGATCCTACGGACAGGCTAACTGCG
CGTGAAGCTCTTAGGCATCCCTTTTTTACAAGAGATCATCTTAGGAGATA
GGTACCCATATACTTGTTACACAATTCTCCGGTTGCAATATGCGGTGGTT
AGAAGCCAAGTATCACAGTTGTGGGATCTGGGTTGTTCTATTTTGTTGTG
CTGTTGCATGTTCTTACTTATCTAACCCAAATCTGAGGCACTGTGAATAT
TTGACATTAAGAAATGGAATTTGTGGGGGAAAAAGGGTGGAGGATTTTCC
TCTTCACCCAACAAAAGACCTAGGTATGTGTTGTACATGGTGGAGTTAGT
TTCTTGGCATGATTTTGCCTACAAATGTGACTAACCAAAGTGTAAAATAT
TGGATCTTTTGTATCT
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