CX294992

Overview
NameCX294992
Unique NameCX294992
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length640
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5981 contig Ccv1_Contig5981:130..769. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX294992 vs. ExPASy Swiss-Prot
Match: C72A1_CATRO (Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.127e-48
Identity = 89/195 (45.64%), Postives = 133/195 (68.21%), Query Frame = 1 
Query:   28 ETIALTIVIVTVLTWAWRVLNWVWLRPKKLEKFLRQQGLKGNSYRLLFGDLKENFIELKEAKARPLSLDDDIAIRVNPFLHKLVNDYGKNSFMWFGPTPRVNIMNPDQIKAIFTRINDFQKVNSI--PLARLLIVGLATLEGEKWAKHRKLINPAFHQEKLKLMLPAFYLSCIEIITKWEKQMSVEGSSELDVWP 606
            + IA TI  + V+ WAWRVL+W W  PK++EK LRQQG +GN YR L GD+KE+    +EA ++P+  ++DI  R+ P ++  +N YG+NSF W G  PR+++M P+ IK + T  + +QK   +  PL + L+ G+ + EG KW+KHR++I+PAF  EKLK MLPAF +   +++TKWEK    +GS E+D++P
Sbjct:   10 KAIAATIFAL-VMAWAWRVLDWAWFTPKRIEKRLRQQGFRGNPYRFLVGDVKESGKMHQEALSKPMEFNNDIVPRLMPHINHTINTYGRNSFTWMGRIPRIHVMEPELIKEVLTHSSKYQKNFDVHNPLVKFLLTGVGSFEGAKWSKHRRIISPAFTLEKLKSMLPAFAICYHDMLTKWEKIAEKQGSHEVDIFP 203
The following BLAST results are available for this feature:
BLAST of CX294992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
C72A1_CATRO1.127e-4845.64Secologanin synthase OS=Catharanthus roseus GN=CYP... [more]
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Properties
Property NameValue
Genbank descriptionC05065D07SK DroRLeaf1 Citrus clementina cDNA clone C05065D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294992 ID=CX294992; Name=CX294992; organism=Citrus clementina; type=EST; length=640bp
TCTGTCGGTGTGAATGCAGTTGCCTCTGAAACCATAGCTTTGACCATTGT
TATTGTAACGGTGCTAACATGGGCATGGAGAGTGCTGAACTGGGTGTGGC
TGAGGCCCAAGAAGCTGGAGAAATTCCTGAGACAGCAAGGTTTAAAAGGC
AATTCTTACAGGCTTCTGTTTGGTGACTTGAAAGAAAATTTCATCGAGTT
GAAGGAAGCAAAAGCCAGACCCCTCAGTTTGGATGACGATATTGCTATTC
GTGTCAATCCATTCCTTCATAAACTGGTAAATGATTATGGTAAGAATTCT
TTCATGTGGTTTGGTCCGACACCAAGGGTGAATATTATGAATCCTGATCA
AATAAAAGCGATATTTACCAGGATCAATGATTTTCAAAAAGTCAATTCAA
TCCCACTTGCCAGGCTGCTGATAGTTGGATTGGCTACCCTTGAGGGGGAG
AAGTGGGCTAAACATAGAAAACTCATCAACCCAGCCTTCCACCAAGAGAA
GCTCAAGCTTATGTTGCCAGCATTCTACTTGAGTTGTATCGAAATAATTA
CAAAGTGGGAGAAGCAAATGTCTGTAGAAGGATCATCTGAGTTGGATGTA
TGGCCTTATCTTGCAATTTGACAGTGATGTGATTTCTCGA
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