CX294996

Overview
NameCX294996
Unique NameCX294996
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length657
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig606 contig Ccv1_Contig606:1..657. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294996 vs. ExPASy Swiss-Prot
Match: PRR37_ORYSI (Two-component response regulator-like PRR37 OS=Oryza sativa subsp. indica GN=PRR37 PE=2 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 1.945e-43
Identity = 94/183 (51.37%), Postives = 121/183 (66.12%), Query Frame = 1
Query:   97 VMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHXXXXXXXXXCTQTQKSIKSKNVEKSGNNTGSNDEXXXXXXXXXXXXXXXXXXXT----QSSWTKKAEEVDSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSRDLDVGGQRSLD 633
            +MSS D+MG VFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH           QTQK  KSK+ ++S NN+GSND+                   +    QSSWTK+A E+DSP+ MSP DQLA+ PDSTCAQVIH  ++I  +R +P T+ K  +  +E  ++F  + +DL++G  R+L+
Sbjct:  142 MMSSNDAMGTVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGIQTQKCAKSKSGDESNNNSGSNDDDDDDGVIMGLNARDGSDNGSGTQAQSSWTKRAVEIDSPQAMSP-DQLADPPDSTCAQVIHLKSDICSNRWLPCTSNKNSKKQKETNDDF--KGKDLEIGSPRNLN 321          
BLAST of CX294996 vs. ExPASy Swiss-Prot
Match: PRR37_ORYSJ (Two-component response regulator-like PRR37 OS=Oryza sativa subsp. japonica GN=PRR37 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.541e-43
Identity = 94/183 (51.37%), Postives = 120/183 (65.57%), Query Frame = 1
Query:   97 VMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHXXXXXXXXXCTQTQKSIKSKNVEKSGNNTGSNDEXXXXXXXXXXXXXXXXXXXT----QSSWTKKAEEVDSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSRDLDVGGQRSLD 633
            +MSS D+MG VFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH           QTQK  KSK+ ++S NN GSND+                   +    QSSWTK+A E+DSP+ MSP DQLA+ PDSTCAQVIH  ++I  +R +P T+ K  +  +E  ++F  + +DL++G  R+L+
Sbjct:  142 MMSSNDAMGTVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGIQTQKCAKSKSGDESNNNNGSNDDDDDDGVIMGLNARDGSDNGSGTQAQSSWTKRAVEIDSPQAMSP-DQLADPPDSTCAQVIHLKSDICSNRWLPCTSNKNSKKQKETNDDF--KGKDLEIGSPRNLN 321          
BLAST of CX294996 vs. ExPASy Swiss-Prot
Match: APRR7_ARATH (Two-component response regulator-like APRR7 OS=Arabidopsis thaliana GN=APRR7 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.106e-41
Identity = 97/189 (51.32%), Postives = 122/189 (64.55%), Query Frame = 1
Query:   97 VMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHXXXXXXXXXCT-QTQKSIKSKNVEKSGNNTGSNDEXXXXXXXXXXXXXXXXXXXTQSSWTKKAEEV-DSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSRDLDVGGQRSLDLQLEYQTE 657
            +MSS DSMGLVFKCLSKGAVDFLVKPIRKNELK LWQHVWRRC           T QTQKS+KSK+++KS  ++GS+DE                    QSSWTKKA +V DSPR +S  D++    DSTCAQV+HSN E   ++ V   A KE Q+H+++ E+     RDL++  +R+ DL LE + E
Sbjct:  158 MMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKILWQHVWRRCQSSSGSGSESGTHQTQKSVKSKSIKKSDQDSGSSDENENGSIGLNASDGSSDGSGAQSSWTKKAVDVDDSPRAVSLWDRV----DSTCAQVVHSNPEFPSNQLVAPPAEKETQEHDDKFED-VTMGRDLEISIRRNCDLALEPKDE 341          
BLAST of CX294996 vs. ExPASy Swiss-Prot
Match: PRR73_ORYSJ (Two-component response regulator-like PRR73 OS=Oryza sativa subsp. japonica GN=PRR73 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.214e-38
Identity = 91/196 (46.43%), Postives = 115/196 (58.67%), Query Frame = 1
Query:   97 VMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHXXXXXXXXXCTQTQKSIKSKNVEKSGNNTGSN----------DEXXXXXXXXXXXXXXXXXXXTQSSWTKKAEEVDSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSRDLDVGGQRSLDLQLEYQT 654
            +MSS DSMG VFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH           +TQK  K K  ++  NN+GSN          ++                   TQSSWTK+A E+DSP+ MSP DQ ++ PDSTCAQVIH  +EI  +R +P    +  + H+E   N     + L++G  R  +  +EYQ+
Sbjct:  161 MMSSNDSMGTVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGIRTQKCTKPKVDDEYENNSGSNNDNEDDDDNDEDDDDLSVGHNARDGSDNGSGTQSSWTKRAVEIDSPQQMSP-DQPSDLPDSTCAQVIHPTSEICSNRWLPTANKRSGKKHKE--NNDDSMGKYLEIGAPR--NSSMEYQS 351          
BLAST of CX294996 vs. ExPASy Swiss-Prot
Match: PRR73_ORYSI (Two-component response regulator-like PRR73 OS=Oryza sativa subsp. indica GN=PRR73 PE=2 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 3.214e-38
Identity = 91/196 (46.43%), Postives = 115/196 (58.67%), Query Frame = 1
Query:   97 VMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHXXXXXXXXXCTQTQKSIKSKNVEKSGNNTGSN----------DEXXXXXXXXXXXXXXXXXXXTQSSWTKKAEEVDSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSRDLDVGGQRSLDLQLEYQT 654
            +MSS DSMG VFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH           +TQK  K K  ++  NN+GSN          ++                   TQSSWTK+A E+DSP+ MSP DQ ++ PDSTCAQVIH  +EI  +R +P    +  + H+E   N     + L++G  R  +  +EYQ+
Sbjct:  161 MMSSNDSMGTVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGIRTQKCTKPKVDDEYENNSGSNNDNEDDDDNDEDDDDLSVGHNARDGSDNGSGTQSSWTKRAVEIDSPQQMSP-DQPSDLPDSTCAQVIHPTSEICSNRWLPTANKRSGKKHKE--NNDDSMGKYLEIGAPR--NSSMEYQS 351          
BLAST of CX294996 vs. ExPASy Swiss-Prot
Match: APRR3_ARATH (Two-component response regulator-like APRR3 OS=Arabidopsis thaliana GN=APRR3 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.920e-23
Identity = 61/130 (46.92%), Postives = 74/130 (56.92%), Query Frame = 1
Query:   97 VMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHXXXXXXXXXCTQTQKSIKSKNVEKSGNNTGSND----EXXXXXXXXXXXXXXXXXXXTQSSWTKKAEEVDSPRHMSPSDQLAECPD 474
            +MSS DSM LVFKCLS GAVDFLVKPIRKNELKNLWQHVWRRCH             +KS+K ++ + S N+   +D    E                   TQSSWTK+A +  S    SPS+Q  + P+
Sbjct:  144 MMSSHDSMVLVFKCLSNGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGIHDKKSVKPESTQGSENDASISDEHRNESGSSGGLSNQDGGSDNGSGTQSSWTKRASDTKS---TSPSNQFPDAPN 270          
BLAST of CX294996 vs. ExPASy Swiss-Prot
Match: PRR95_ORYSJ (Two-component response regulator-like PRR95 OS=Oryza sativa subsp. japonica GN=PRR95 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.098e-13
Identity = 36/70 (51.43%), Postives = 49/70 (70.00%), Query Frame = 1
Query:   97 VMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHXXXXXXXXXCTQTQKSIKSKNVEKSG 306
            +MSS DS+ +VFKC+ KGA DFLVKPIRKNEL+NLWQHVWR+            TQ + ++  ++ +K+G
Sbjct:  123 MMSSNDSVSMVFKCMLKGAADFLVKPIRKNELRNLWQHVWRK-QLSSGVLDVQHTQQEDNLTERHEQKTG 191          
BLAST of CX294996 vs. ExPASy Swiss-Prot
Match: APRR9_ARATH (Two-component response regulator-like APRR9 OS=Arabidopsis thaliana GN=APRR9 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 8.813e-12
Identity = 29/42 (69.05%), Postives = 37/42 (88.10%), Query Frame = 1
Query:   97 VMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 222
            +MSS DS+ +V KC+ +GA D+L+KP+RKNELKNLWQHVWRR
Sbjct:  117 MMSSQDSIKMVLKCMLRGAADYLIKPMRKNELKNLWQHVWRR 158          
BLAST of CX294996 vs. ExPASy Swiss-Prot
Match: APRR5_ARATH (Two-component response regulator-like APRR5 OS=Arabidopsis thaliana GN=APRR5 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.503e-11
Identity = 28/42 (66.67%), Postives = 37/42 (88.10%), Query Frame = 1
Query:   97 VMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 222
            +MS+ DS+  V+KC+ KGA D+LVKP+R+NEL+NLWQHVWRR
Sbjct:  130 MMSTQDSVNTVYKCMLKGAADYLVKPLRRNELRNLWQHVWRR 171          
The following BLAST results are available for this feature:
BLAST of CX294996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PRR37_ORYSI1.945e-4351.37Two-component response regulator-like PRR37 OS=Ory... [more]
PRR37_ORYSJ2.541e-4351.37Two-component response regulator-like PRR37 OS=Ory... [more]
APRR7_ARATH3.106e-4151.32Two-component response regulator-like APRR7 OS=Ara... [more]
PRR73_ORYSJ3.214e-3846.43Two-component response regulator-like PRR73 OS=Ory... [more]
PRR73_ORYSI3.214e-3846.43Two-component response regulator-like PRR73 OS=Ory... [more]
APRR3_ARATH2.920e-2346.92Two-component response regulator-like APRR3 OS=Ara... [more]
PRR95_ORYSJ2.098e-1351.43Two-component response regulator-like PRR95 OS=Ory... [more]
APRR9_ARATH8.813e-1269.05Two-component response regulator-like APRR9 OS=Ara... [more]
APRR5_ARATH1.503e-1166.67Two-component response regulator-like APRR5 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionC05065D12SK DroRLeaf1 Citrus clementina cDNA clone C05065D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294996 ID=CX294996; Name=CX294996; organism=Citrus clementina; type=EST; length=657bp
CCGGGCTGCAGATTCGGCCGAGGATTTATTACTTTTCAAAACACTTTCTG
TTTGGATACTTGTAACTACTTTTGGTGAGATCTATATCTATTTGCAGTGA
TGTCGTCTCTTGACTCCATGGGTTTAGTCTTTAAGTGTTTATCAAAAGGT
GCTGTTGACTTTCTGGTGAAGCCGATACGGAAGAATGAGCTTAAAAACCT
TTGGCAGCATGTATGGAGAAGATGTCATAGTTCTAGTGGTAGTGGAAGTG
AAAGCTGCACACAAACTCAAAAATCGATAAAATCAAAAAATGTTGAAAAG
TCAGGCAATAATACTGGCAGCAATGATGAAGACAATAATGGGAGCATTGG
TCTGAATGGTGGGGATGGAAGTGATGATGGGAGCGGCACCCAGAGCTCTT
GGACAAAAAAGGCTGAGGAAGTTGACAGCCCCAGGCATATGTCTCCTTCT
GATCAACTAGCCGAGTGCCCTGATAGCACTTGTGCCCAGGTTATCCACTC
AAATGCTGAGATAACTGGTAGCAGAAGGGTTCCTGTGACTGCAGCAAAAG
AGTGTCAAGACCATGAGGAACGATGTGAAAATTTTGCAAAACGCAGCAGA
GACCTGGATGTAGGTGGCCAAAGAAGTCTAGATTTGCAACTTGAGTACCA
AACTGAG
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