CX294998

Overview
NameCX294998
Unique NameCX294998
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX294998_ssr594 microsatellite CX294998_ssr594:594..621. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX294998 vs. ExPASy Swiss-Prot
Match: C72A1_CATRO (Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.428e-53
Identity = 88/157 (56.05%), Postives = 123/157 (78.34%), Query Frame = 1
Query:    4 FGNNKPDYHGLNHLKIVQMIFNEVLRLYPPAVMLARAVNKETKLGNLILPAGVQISLPVIMVHHDPELWGDDAIEFKPERFSEGISKVTRNQVSYFPFAWGPRICIGLNFALVEAKIALAMILQNFSFELSPSYVHAPTAVLTLHPEFGTHLILRKL 474
            FG NKP++  LNHLK V MI  EVLRLYPP + L + V+K+TKLG+  +PAG Q+ LP +M+H +  +WG+DA+EF P RF +G++  T+N V+Y PF+WGPR+C+G NFAL++AK+ LAMILQ F F+++PSYVHAP  +LT+ P+FG+H+I +KL
Sbjct:  366 FGKNKPEFERLNHLKYVSMILYEVLRLYPPVIDLTKIVHKDTKLGSYTIPAGTQVMLPTVMLHREKSIWGEDAMEFNPMRFVDGVANATKNNVTYLPFSWGPRVCLGQNFALLQAKLGLAMILQRFKFDVAPSYVHAPFTILTVQPQFGSHVIYKKL 522          
BLAST of CX294998 vs. ExPASy Swiss-Prot
Match: CP3AT_PIG (Cytochrome P450 3A29 OS=Sus scrofa GN=CYP3A29 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.163e-25
Identity = 56/124 (45.16%), Postives = 79/124 (63.71%), Query Frame = 1
Query:   19 PDYHGLNHLKIVQMIFNEVLRLYPPAVMLARAVNKETKLGNLILPAGVQISLPVIMVHHDPELWGDDAIEFKPERFSEGISKVTRNQVSYFPFAWGPRICIGLNFALVEAKIALAMILQNFSFE 390
            P Y  L  ++ + M+ NE LRLYP A  L RA  K+ ++  + +P G  + +PV ++H DP+LW +   EF+PERFS+   K T N  +Y PF  GPR CIG+ FAL+  K+AL  +LQNFSF+
Sbjct:  345 PTYDALAQMEYLDMVVNETLRLYPIAARLERACKKDVEIHGVFVPKGTVVVVPVFVLHRDPDLWPEPE-EFRPERFSKK-HKDTINPYTYLPFGTGPRNCIGMRFALMNMKLALVRVLQNFSFK 466          
BLAST of CX294998 vs. ExPASy Swiss-Prot
Match: CP3AO_SHEEP (Cytochrome P450 3A24 OS=Ovis aries GN=CYP3A24 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.978e-23
Identity = 50/124 (40.32%), Postives = 80/124 (64.52%), Query Frame = 1
Query:   19 PDYHGLNHLKIVQMIFNEVLRLYPPAVMLARAVNKETKLGNLILPAGVQISLPVIMVHHDPELWGDDAIEFKPERFSEGISKVTRNQVSYFPFAWGPRICIGLNFALVEAKIALAMILQNFSFE 390
            P Y  L  ++ + M+ NE LR++P AV L R   K+ ++  + +P G  +++P+ ++H DP+LW +   EF+PERFS+  +K + N   Y PF  GPR CIG+ FA++  K+A+  +LQNFSF+
Sbjct:  345 PTYDVLAQMEYLDMVVNETLRMFPIAVRLDRLCKKDVEIHGVSIPKGTAVTVPIFVLHRDPQLWPEPE-EFRPERFSKK-NKDSINPYVYLPFGTGPRNCIGMRFAIMNMKLAIVRVLQNFSFK 466          
BLAST of CX294998 vs. ExPASy Swiss-Prot
Match: CP3A5_HUMAN (Cytochrome P450 3A5 OS=Homo sapiens GN=CYP3A5 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.903e-22
Identity = 50/124 (40.32%), Postives = 76/124 (61.29%), Query Frame = 1
Query:   19 PDYHGLNHLKIVQMIFNEVLRLYPPAVMLARAVNKETKLGNLILPAGVQISLPVIMVHHDPELWGDDAIEFKPERFSEGISKVTRNQVSYFPFAWGPRICIGLNFALVEAKIALAMILQNFSFE 390
            P Y  +  ++ + M+ NE LRL+P A+ L R   K+ ++  + +P G  + +P   +HHDP+ W +   EF+PERFS+   K + +   Y PF  GPR CIG+ FAL+  K+AL  +LQNFSF+
Sbjct:  345 PTYDAVVQMEYLDMVVNETLRLFPVAIRLERTCKKDVEINGVFIPKGSMVVIPTYALHHDPKYWTEPE-EFRPERFSK--KKDSIDPYIYTPFGTGPRNCIGMRFALMNMKLALIRVLQNFSFK 465          
BLAST of CX294998 vs. ExPASy Swiss-Prot
Match: CP3AS_BOVIN (Cytochrome P450 3A28 OS=Bos taurus GN=CYP3A28 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.792e-22
Identity = 50/124 (40.32%), Postives = 79/124 (63.71%), Query Frame = 1
Query:   19 PDYHGLNHLKIVQMIFNEVLRLYPPAVMLARAVNKETKLGNLILPAGVQISLPVIMVHHDPELWGDDAIEFKPERFSEGISKVTRNQVSYFPFAWGPRICIGLNFALVEAKIALAMILQNFSFE 390
            P Y  L  ++ + M+ NE LR++P A  L R   K+ ++  + +P G  + +P+ ++H++PELW +   EF+PERFS+  +K + N   Y PF  GPR C+G+ FA++  K+AL  ILQNFSF+
Sbjct:  345 PTYDALVQMEYLDMVVNETLRMFPIAGRLERVCKKDVEIHGVTIPKGTTVLVPLFVLHNNPELWPEPE-EFRPERFSKN-NKDSINPYVYLPFGTGPRNCLGMRFAIMNIKLALVRILQNFSFK 466          
BLAST of CX294998 vs. ExPASy Swiss-Prot
Match: CP3AC_CANFA (Cytochrome P450 3A12 OS=Canis familiaris GN=CYP3A12 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.952e-22
Identity = 51/124 (41.13%), Postives = 74/124 (59.68%), Query Frame = 1
Query:   19 PDYHGLNHLKIVQMIFNEVLRLYPPAVMLARAVNKETKLGNLILPAGVQISLPVIMVHHDPELWGDDAIEFKPERFSEGISKVTRNQVSYFPFAWGPRICIGLNFALVEAKIALAMILQNFSFE 390
            P Y  L  ++ + M+ NE LRLYP A  L R   K+ ++  + +P G  + +P   +H D  LW +   EF+PERFS   +K + N  +Y PF  GPR CIG+ FA++  K+AL  +LQNFSF+
Sbjct:  345 PTYDALVQMEYLDMVLNETLRLYPIAGRLERVCKKDVEISGVFIPKGTVVMVPTFTLHRDQSLWPEPE-EFRPERFSRK-NKDSINPYTYLPFGTGPRNCIGMRFAIMNMKLALVRVLQNFSFK 466          
BLAST of CX294998 vs. ExPASy Swiss-Prot
Match: CP3A7_HUMAN (Cytochrome P450 3A7 OS=Homo sapiens GN=CYP3A7 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 4.952e-22
Identity = 52/124 (41.94%), Postives = 77/124 (62.10%), Query Frame = 1
Query:   19 PDYHGLNHLKIVQMIFNEVLRLYPPAVMLARAVNKETKLGNLILPAGVQISLPVIMVHHDPELWGDDAIEFKPERFSEGISKVTRNQVSYFPFAWGPRICIGLNFALVEAKIALAMILQNFSFE 390
            P Y  +  L+ + M+ NE LRL+P A+ L R   K+ ++  + +P GV + +P  ++HHDP+ W +   +F PERFS+  +K   +   Y PF  GPR CIG+ FALV  K+AL  +LQNFSF+
Sbjct:  345 PTYDTVLQLEYLDMVVNETLRLFPVAMRLERVCKKDVEINGMFIPKGVVVMIPSYVLHHDPKYWREPE-KFLPERFSKK-NKDNIDPYIYTPFGSGPRNCIGMRFALVNMKLALVRVLQNFSFK 466          
BLAST of CX294998 vs. ExPASy Swiss-Prot
Match: CP3AB_MOUSE (Cytochrome P450 3A11 OS=Mus musculus GN=Cyp3a11 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.103e-21
Identity = 51/124 (41.13%), Postives = 76/124 (61.29%), Query Frame = 1
Query:   19 PDYHGLNHLKIVQMIFNEVLRLYPPAVMLARAVNKETKLGNLILPAGVQISLPVIMVHHDPELWGDDAIEFKPERFSEGISKVTRNQVSYFPFAWGPRICIGLNFALVEAKIALAMILQNFSFE 390
            P Y  +  ++ + M+ NE LRLYP A  L R   K+ +L  + +P G  + +P   +HHDP+ W +   EF+PERFS+  +K + +   Y PF  GPR C+G+ FAL+  K+AL  I+QNFSF+
Sbjct:  346 PTYDTVMEMEYLDMVLNETLRLYPIANRLERVCKKDVELNGVYIPKGSTVMIPSYALHHDPQHWSEPE-EFQPERFSKE-NKGSIDPYVYLPFGNGPRNCLGMRFALMNMKLALTKIMQNFSFQ 467          
BLAST of CX294998 vs. ExPASy Swiss-Prot
Match: CP3AJ_CAPAE (Cytochrome P450 3A19 (Fragment) OS=Capra aegagrus GN=CYP3A19 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.210e-21
Identity = 50/123 (40.65%), Postives = 76/123 (61.79%), Query Frame = 1
Query:   19 PDYHGLNHLKIVQMIFNEVLRLYPPAVMLARAVNKETKLGNLILPAGVQISLPVIMVHHDPELWGDDAIEFKPERFSEGISKVTRNQVSYFPFAWGPRICIGLNFALVEAKIALAMILQNFSF 387
            P Y  L  ++ + M+ NE LR++P A  L R   K+ ++  + +P G  + +P+ ++H++PE W +   EF+PERFS+  +K   N   Y PF  GPR C+G+ FAL+  K+AL  ILQNFSF
Sbjct:   56 PTYDALVQMEYLDMVVNETLRMFPIAGRLERLCKKDVEIHGVSIPKGTTVMVPLFVLHNNPEFWPEPE-EFRPERFSKK-NKDGINPYVYLPFGTGPRNCVGMRFALMNIKLALVRILQNFSF 176          
BLAST of CX294998 vs. ExPASy Swiss-Prot
Match: C13A2_CAEEL (Putative cytochrome P450 CYP13A2 OS=Caenorhabditis elegans GN=cyp-13A2 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.210e-21
Identity = 51/130 (39.23%), Postives = 79/130 (60.77%), Query Frame = 1
Query:    4 FGNNKPDYHGLNHLKIVQMIFNEVLRLYPPA-VMLARAVNKETKLGNLILPAGVQISLPVIMVHHDPELWGDDAIEFKPERFSEGISKVTRNQVSYFPFAWGPRICIGLNFALVEAKIALAMILQNFSFE 390
            FG ++ ++  L  LK +  +  E LRLYP A +  +R   K T +  + + AGV + +    +H+DPELWG+D  EFKPER+S    +   ++ +Y PF  GPR CIG+  A++E KI L  +L+N++FE
Sbjct:  357 FGTSEVEFEKLGRLKYMDCVIKEALRLYPLASISNSRKCMKTTTVNGVKIEAGVYVQMDTWSLHYDPELWGEDVKEFKPERWS--TDEPLEHKGAYLPFGLGPRQCIGMRLAIMEQKILLTHLLKNYTFE 484          
The following BLAST results are available for this feature:
BLAST of CX294998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
C72A1_CATRO1.428e-5356.05Secologanin synthase OS=Catharanthus roseus GN=CYP... [more]
CP3AT_PIG8.163e-2545.16Cytochrome P450 3A29 OS=Sus scrofa GN=CYP3A29 PE=2... [more]
CP3AO_SHEEP9.978e-2340.32Cytochrome P450 3A24 OS=Ovis aries GN=CYP3A24 PE=2... [more]
CP3A5_HUMAN2.903e-2240.32Cytochrome P450 3A5 OS=Homo sapiens GN=CYP3A5 PE=1... [more]
CP3AS_BOVIN3.792e-2240.32Cytochrome P450 3A28 OS=Bos taurus GN=CYP3A28 PE=2... [more]
CP3AC_CANFA4.952e-2241.13Cytochrome P450 3A12 OS=Canis familiaris GN=CYP3A1... [more]
CP3A7_HUMAN4.952e-2241.94Cytochrome P450 3A7 OS=Homo sapiens GN=CYP3A7 PE=1... [more]
CP3AB_MOUSE1.103e-2141.13Cytochrome P450 3A11 OS=Mus musculus GN=Cyp3a11 PE... [more]
CP3AJ_CAPAE3.210e-2140.65Cytochrome P450 3A19 (Fragment) OS=Capra aegagrus ... [more]
C13A2_CAEEL3.210e-2139.23Putative cytochrome P450 CYP13A2 OS=Caenorhabditis... [more]

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Properties
Property NameValue
Genbank descriptionC05065E02SK DroRLeaf1 Citrus clementina cDNA clone C05065E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294998 ID=CX294998; Name=CX294998; organism=Citrus clementina; type=EST; length=717bp
GTTTTTGGCAATAATAAGCCAGATTATCATGGATTGAATCACCTCAAAAT
TGTTCAAATGATATTCAACGAGGTACTGAGGCTTTATCCTCCAGCAGTTA
TGCTTGCTCGAGCTGTTAATAAAGAAACGAAACTTGGAAACTTGATATTA
CCCGCTGGGGTTCAAATCAGTTTGCCAGTGATCATGGTTCACCATGATCC
TGAACTTTGGGGTGATGATGCCATTGAGTTTAAACCTGAGAGGTTCTCTG
AAGGAATTTCAAAGGTGACCAGGAATCAAGTTTCTTATTTCCCATTTGCA
TGGGGTCCTAGGATATGCATTGGACTAAATTTCGCCCTGGTTGAGGCGAA
AATTGCTTTGGCAATGATTCTGCAAAATTTCTCATTCGAGTTGTCTCCGT
CCTATGTTCATGCTCCGACCGCAGTTCTAACTCTTCATCCAGAATTCGGT
ACCCACTTGATTCTACGGAAACTGTAGTGTGAGAATAATACAAGTAAATA
GTATATCATCAATAAGATTAGCATGATGCTAAATTTCCTTGCCGTTGTAA
TGAAGTTCAGAGCTTGGGCAGCAGCTGTTTGTGTGTGTATTATACACACA
CACACACACACACACACACACAAATTAGATTTTTGTATTGACAATACGTG
AGTTGAATCCATTTTTAAGGAATCATAATTATCACATCCCACATTGTCAT
TGTTTAGATGGTTTCAT
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