CX295001

Overview
NameCX295001
Unique NameCX295001
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX295001 vs. ExPASy Swiss-Prot
Match: SIN3_ARATH (Paired amphipathic helix protein Sin3 OS=Arabidopsis thaliana GN=SIN3 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.503e-18
Identity = 51/95 (53.68%), Postives = 64/95 (67.37%), Query Frame = 2 
Query:    2 MDPNFAAYLHHDFLSV-PDKKEKPGIFLKRNKRKFVGNDEFSATCRAMEGLQVVNGLECKITCNSSKVSYVLDTEDFLFRKKKRTFHQNGPCHNQ 283
            +DP FAAYLH+DFLS+ P+ +E   I+L RNKRK    DE      + + +++ NGLECKI C SSKVSYVL+TED L R KKR   +   CHNQ
Sbjct: 1248 IDPTFAAYLHNDFLSIQPNAREDRRIYLNRNKRKVCREDE---QLYSTDEVKIKNGLECKIACGSSKVSYVLETEDLLVRVKKR---RKTLCHNQ 1336
The following BLAST results are available for this feature:
BLAST of CX295001 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SIN3_ARATH1.503e-1853.68Paired amphipathic helix protein Sin3 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionC05065E06SK DroRLeaf1 Citrus clementina cDNA clone C05065E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295001 ID=CX295001; Name=CX295001; organism=Citrus clementina; type=EST; length=723bp
CATGGATCCTAATTTTGCAGCGTACCTGCACCATGACTTCCTTTCAGTTC
CTGACAAGAAAGAGAAGCCTGGAATATTCTTGAAGAGGAATAAACGCAAA
TTTGTAGGCAATGATGAGTTTTCGGCAACATGCCGGGCCATGGAAGGGCT
TCAAGTTGTCAATGGTTTGGAGTGTAAGATAACTTGCAATTCATCCAAGG
TCTCATATGTTTTGGATACTGAAGATTTTTTGTTTCGTAAAAAGAAAAGA
ACTTTCCATCAGAATGGCCCGTGCCACAACCAGGCAAGGGCTTCAAATGG
TTATCCAATTAGAAGATTACAACGGTTTCAAAGATGGCTTTCTGGCTCGT
AATGTGCCCTGCAGTAGATATGCCTTTAGCATACATTAGGTACACTGGTG
CTGGAACTGGAAAGTTTGACAGCGCTGCAAGTGGAAAAGCTTTTGCAGGA
TTCATCTTGTATTCTCTCATATTTCTGTCTCACAAATCCAATAAAGAATC
TGAGGGGAGGGAATATGGCTCGGAGGATTGTAGCATAATGTAAGTTTGTG
GCATTTTGTGCCACCCATGTAAATAGAGGTAATATGTGATGTAAAACCTG
AGATATATGTTCATTCCATTCATCTATATTTTTTTTTTTCTTCTAACTTT
TTTCACTTGCACAAGTTAGGTTCCGCACAAAATTGCAATTATTTAATTTA
TTTTGCTCTTCATTGGCCATATG
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