CX295014

Overview
NameCX295014
Unique NameCX295014
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig428 contig Ccv1_Contig428:146..871. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295014 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.358e-25
Identity = 69/186 (37.10%), Postives = 101/186 (54.30%), Query Frame = 1
Query:   19 MKTSFVVKLSFLILALATKAQ---LGTSESEPVLDVYGNKVESNLEYKLLEVKNGTSGGFSIHGGTSGE-CPLDVVQLSSPTERDHYVRLLPFDNST-VVRESTDLNL-----------IEPVWTVGNYNDSLGKWFLTTGGIIGHPGAKTLLNWFKLEKVSVSIYNLVHCPSVCDSCVKLCNKVG 528
            MKT+  V L  L+ A  +K+    +  + + PVLD  G+++++ ++Y +L   +G  GG    G  +G+ CP  VVQ  S  +    V     D+   VVR STD+N+              VW + NY++S GKW++TT G+ G PG  TL +WFK+EK  V  Y    CPSVCDSC  LC+ +G
Sbjct:    1 MKTATAVVL--LLFAFTSKSYFFGVANAANSPVLDTDGDELQTGVQYYVLSSISGAGGGGLALGRATGQSCPEIVVQRRSDLDNGTPVIFSNADSKDDVVRVSTDVNIEFVPIRDRLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNTLCSWFKIEKAGVLGYKFRFCPSVCDSCTTLCSDIG 184          
BLAST of CX295014 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 2.973e-22
Identity = 67/194 (34.54%), Postives = 98/194 (50.52%), Query Frame = 1
Query:   19 MKTSFVVKLSFL----ILALATKAQLGTSES--EPVLDVYGNKVESNLEYKLLEVKNGTSGGFSIHGGTSGE---CPLDVVQLSSPTERDHYVRLLPFD-NSTVVRESTDLNL-----------IEPVWTVGNYNDSLGKWFLTTGGIIGHPGAKTLLNWFKLEKVSVS-IYNLVHCPSVCDSCVKLCNKVGIF 534
            MK   ++ LSF     +LA A    L  ++S   PVLD+ G K+ +   Y ++ V     GG ++   T      CP  VVQ     + D  +   P +    VVR STDLN+              VW +  Y++S G++F+T GG+ G+PG +T+ +WFK+E+   S  Y LV CP+VC SC   C  VGI+
Sbjct:    1 MKELTMLSLSFFFVSALLAAAANPLLSAADSAPNPVLDIDGEKLRTGTNYYIVPVLRDHGGGLTVSATTPNGTFVCPPRVVQTRKEVDHDRPLAFFPENPKEDVVRVSTDLNINFSAFMPCRWTSSTVWRLDKYDESTGQYFVTIGGVKGNPGPETISSWFKIEEFCGSGFYKLVFCPTVCGSCKVKCGDVGIY 194          
BLAST of CX295014 vs. ExPASy Swiss-Prot
Match: SPI5_SOLTU (Serine protease inhibitor 5 OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.260e-11
Identity = 54/172 (31.40%), Postives = 81/172 (47.09%), Query Frame = 1
Query:   91 SESEPVLDVYGNKVESNLEYKLLEVKNGTSGG--------------------FSIHGGTSGECPLDVVQLSS---PTERDHYVRLLPFDNSTVVRESTDLNLIEPVWTVGNYNDSLGKWFLTTGGIIGHPGAKTLLNWFKLEKVSVSIYNLVHCPSVCDSCVKLCNKVGIFY 537
            S++ PVLDV G +++  L Y+++ +  G  GG                    F+   G SG  P+  +  SS   P   +  +  + FD STV      L +   +W VG+Y+ SLG   L TGG IG   +    +WFK+ K S   YNL++CP   D   + C KVG+ +
Sbjct:   31 SDATPVLDVTGKELDPRLSYRIISIGRGALGGDVYLGKSPNSDAPCANGVFRFNSDVGPSGT-PVRFIGSSSHFGPHIFEGELLNIQFDISTV-----KLCVSYTIWKVGDYDASLGTMLLETGGTIGQADS----SWFKIVKSSQLGYNLLYCPFSSDD--QFCLKVGVVH 190          
The following BLAST results are available for this feature:
BLAST of CX295014 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ASP_THECC8.358e-2537.1021 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU2.973e-2234.54Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
SPI5_SOLTU5.260e-1131.40Serine protease inhibitor 5 OS=Solanum tuberosum P... [more]
back to top
Properties
Property NameValue
Genbank descriptionC05065F07SK DroRLeaf1 Citrus clementina cDNA clone C05065F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295014 ID=CX295014; Name=CX295014; organism=Citrus clementina; type=EST; length=726bp
GAGGCAATCATAAATAAAATGAAGACTTCATTCGTAGTAAAACTCTCATT
CCTTATCCTTGCCTTGGCCACAAAAGCTCAGTTGGGCACCTCAGAATCTG
AACCAGTCTTAGATGTCTATGGCAACAAGGTCGAATCCAACCTCGAGTAT
AAGCTTCTCGAAGTCAAAAATGGCACTAGTGGTGGATTCAGTATACATGG
AGGCACAAGTGGAGAGTGTCCGTTGGACGTTGTCCAACTAAGTTCTCCTA
CGGAAAGGGATCATTATGTAAGATTATTACCGTTTGACAATTCTACAGTT
GTCCGGGAATCCACTGATCTCAACTTGATAGAACCAGTATGGACAGTTGG
AAACTATAATGATTCATTAGGAAAATGGTTTCTAACAACCGGCGGAATCA
TCGGCCACCCAGGAGCTAAAACGTTGCTAAATTGGTTTAAGCTTGAGAAA
GTTAGTGTCAGTATATACAATCTTGTTCATTGTCCATCTGTTTGCGATTC
TTGCGTTAAACTCTGTAACAAAGTCGGCATCTTCTATGTGGACGGCGTTC
GACGTCTAGTTCTGGTTCGTGATGATGATCAGCCTCTGCGGTTGGTGTTA
TTTCCAGCTCCTAATCCTTCAAGATCCTCTATGTAATGAATTACCTAGCT
ATATTATATATTCTGAATAATTTACCAGGCTAGCTAGTACTCTAATCTCT
ATGATTAAATAGTAATAAATTAGCTA
back to top