CX295020

Overview
NameCX295020
Unique NameCX295020
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX295020 vs. ExPASy Swiss-Prot
Match: GAT25_ARATH (GATA transcription factor 25 OS=Arabidopsis thaliana GN=TIFY2A PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.401e-18
Identity = 53/98 (54.08%), Postives = 65/98 (66.33%), Query Frame = 3 
Query:  417 HGSNPQMQMSDEQHSIHHVNYVPEHELHHISNGDVM-DDEHDEGNGVGESEAMEGDAPSDPGSLSDNRAI-----AEIGDQLTLSFQGQVYVFDSVSP 692
            HGSN +M + + Q  +H V +   H LHHI NG  M DD+ D+GN  G SE +E D PS PG+++DNR       +E GDQLTLSFQGQVYVFDSV P
Sbjct:    5 HGSNARMHIREAQDPMH-VQF-EHHALHHIHNGSGMVDDQADDGNAGGMSEGVETDIPSHPGNVTDNRGEVVDRGSEQGDQLTLSFQGQVYVFDSVLP 100
[Close]
BLAST of CX295020 vs. ExPASy Swiss-Prot
Match: GAT27_ARATH (GATA transcription factor 27 OS=Arabidopsis thaliana GN=TIFY2B PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.894e-15
Identity = 49/97 (50.52%), Postives = 60/97 (61.86%), Query Frame = 3 
Query:  417 HGSNPQMQMSDEQHSIHHVNYVPEHELHHISNGDVMDDEHDEGNGVGESEAMEGDAPSDPGSLSDNRAIA-----EIGDQLTLSFQGQVYVFDSVSP 692
            HG N +M +   Q+ +H V Y  +H LHHI N + M D+H +G   G  E +E D PS PG+ +DNR        E GDQLTLSFQGQVYVFD VSP
Sbjct:    5 HGRNGRMHIGVAQNPMH-VQY-EDHGLHHIDNENSMMDDHADG---GMDEGVETDIPSHPGNSADNRGEVVDRGIENGDQLTLSFQGQVYVFDRVSP 96
The following BLAST results are available for this feature:
BLAST of CX295020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
GAT25_ARATH1.401e-1854.08GATA transcription factor 25 OS=Arabidopsis thalia... [more]
GAT27_ARATH1.894e-1550.52GATA transcription factor 27 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionC05065G02SK DroRLeaf1 Citrus clementina cDNA clone C05065G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295020 ID=CX295020; Name=CX295020; organism=Citrus clementina; type=EST; length=692bp
GATTCGTCGCACACTCGAATGGTACCTCCAATTAATCGGTTTAATTGGCT
GTTTATTCTAACGTAAATTTGAGCTGATAACAAGATGAAAAAAAAAAACA
AATCTTTTAATAGATTTAGCTTAAATTAATCGGTATGGTTCCTGAGAAAG
TTTAGGCAATTAGAAAGAGCGCCATTTATTTATTACAATTTTATGTTTTT
GCTATTTCCTGAGCTACCGCCCTGGTTTAATTTACTTGATTCAAGAATTA
TAGCGTTGCATAAACTTGAATGCAAAATCAGATTGTTTCTATGAACTGTA
TTAATTAAATGATAGTAATATTTAGTATTTTTGTACTTGTTCTCGCACTC
GCGTATTTATTCATATATTTTAAGAGCGACGGCCTTTGAAATTTTAGTGT
AGAACAGAGGATGGATCATGGGAGCAATCCTCAAATGCAAATGAGTGATG
AGCAGCATTCAATCCATCACGTGAATTATGTGCCAGAGCATGAACTGCAT
CATATAAGCAATGGGGATGTGATGGATGATGAGCATGATGAGGGTAATGG
TGTTGGAGAGAGTGAGGCAATGGAAGGGGATGCACCATCTGACCCCGGGA
GTCTTTCTGATAATCGTGCCATTGCTGAGATTGGGGACCAGCTAACACTG
TCTTTCCAAGGGCAGGTTTATGTGTTTGACTCCGTTTCCCCG
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