CX295021

Overview
NameCX295021
Unique NameCX295021
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295021 vs. ExPASy Swiss-Prot
Match: RFA1_XENLA (Replication protein A 70 kDa DNA-binding subunit OS=Xenopus laevis GN=rpa1 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.724e-25
Identity = 73/217 (33.64%), Postives = 116/217 (53.46%), Query Frame = 3
Query:   63 RIIVVLNMETII---LDCEPIGNPKIFSESELTAQKTIPSNNLPQPVRVNNYSAPNSGTFNLQNSGTFNSQNPGSFSTPNSGTFRAPNAGSIVRSFXXXXXXXXXXXXNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLNL-HKEFHHLKND 701
            R+I+V+ ++ +    L    IGNP+ +++ +            PQP      SAP      LQN    NS  P S    N GT +    GS++ +                         + ++++PIA+LNPYQ +W ++ARVT KG +R ++N+RG+GK+FS +++D + GEIR T FN   D+F+ IIEV +VY  SKG+L + +K++  +KND
Sbjct:   92 RVIIVMELDVLKSADLVMGKIGNPQPYNDGQ------------PQPAAPAPASAPAPAPSKLQN----NSAPPPSM---NRGTSKLFGGGSLLNT----------------------PGGSQSKVVPIASLNPYQSKWTVRARVTNKGQIRTWSNSRGEGKLFSIEMVD-ESGEIRATAFNEQADKFFSIIEVNKVYYFSKGTLKIANKQYTSVKND 266          
BLAST of CX295021 vs. ExPASy Swiss-Prot
Match: RFA1_XENTR (Replication protein A 70 kDa DNA-binding subunit OS=Xenopus tropicalis GN=rpa1 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.489e-24
Identity = 70/218 (32.11%), Postives = 113/218 (51.83%), Query Frame = 3
Query:   63 RIIVVLNMETII---LDCEPIGNPKIFSESELTAQKTIPSN-NLPQPVRVNNYSAPNSGTFNLQNSGTFNSQNPGSFSTPNSGTFRAPNAGSIVRSFXXXXXXXXXXXXNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLNL-HKEFHHLKND 701
            R+I+V+ ME +    L    IGNP  +++ +   Q   P+  + P P +  N SAP   + N   S  F                     GS+V +                         + ++++PIA+LNPYQ +W ++ARVT KG +R ++N+RG+GK+FS +++D + GEIR T FN   D+F+ +IEV +VY  SKG+L + +K++  +KND
Sbjct:   92 RVIIVMEMEVLKSADLVKGKIGNPHPYNDGQGPPQPAAPAPASAPPPSKPQNISAPPPPSMNRGASKLFGG-------------------GSVVNT----------------------PGGSQSKVVPIASLNPYQSKWTVRARVTNKGQIRTWSNSRGEGKLFSIEMVD-ESGEIRATAFNEQADKFFSLIEVNKVYYFSKGTLKIANKQYTSVKND 267          
BLAST of CX295021 vs. ExPASy Swiss-Prot
Match: RFA1_DANRE (Replication protein A 70 kDa DNA-binding subunit OS=Danio rerio GN=rpa1 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.752e-23
Identity = 51/95 (53.68%), Postives = 75/95 (78.95%), Query Frame = 3
Query:  420 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLNL-HKEFHHLKND 701
            ++++PIA+LNPYQ +W I+ARVT K  +R ++N+RGDGK+FS +L+D + GEIR T FN  VD+F+ +IE G+V+ ISKG+L + +K+F  LKND
Sbjct:  169 SKVVPIASLNPYQSKWTIRARVTNKSAIRTWSNSRGDGKLFSMELVD-ESGEIRATGFNNEVDKFFSLIEQGKVFYISKGTLKIANKQFSSLKND 262          
BLAST of CX295021 vs. ExPASy Swiss-Prot
Match: RFA1_MOUSE (Replication protein A 70 kDa DNA-binding subunit OS=Mus musculus GN=Rpa1 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.156e-21
Identity = 48/95 (50.53%), Postives = 72/95 (75.79%), Query Frame = 3
Query:  420 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLNL-HKEFHHLKND 701
            ++++PIA+L PYQ +W I ARVT K  +R ++N+RG+GK+FS +L+D + GEIR T FN  VD+F+ +IEV +VY  SKG+L + +K+F  +KND
Sbjct:  191 SKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVD-ESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGALKIANKQFSAVKND 284          
BLAST of CX295021 vs. ExPASy Swiss-Prot
Match: RFA1_HUMAN (Replication protein A 70 kDa DNA-binding subunit OS=Homo sapiens GN=RPA1 PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.156e-21
Identity = 51/107 (47.66%), Postives = 77/107 (71.96%), Query Frame = 3
Query:  393 GPILKNEA---PARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLNL-HKEFHHLKND 701
            GP L + +    ++++PIA+L PYQ +W I ARVT K  +R ++N+RG+GK+FS +L+D + GEIR T FN  VD+F+ +IEV +VY  SKG+L + +K+F  +KND
Sbjct:  170 GPSLSHTSGGTQSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVD-ESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKND 275          
BLAST of CX295021 vs. ExPASy Swiss-Prot
Match: RFA1_CHICK (Replication protein A 70 kDa DNA-binding subunit OS=Gallus gallus GN=RPA1 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.393e-21
Identity = 46/95 (48.42%), Postives = 72/95 (75.79%), Query Frame = 3
Query:  420 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSL-NLHKEFHHLKND 701
            ++++PIA+LNPYQ +W I ARVT KG +R ++N+RG+GK+FS +L+D + GEIR T FN   D+F+ +IE+ +VY  +KG+L   +K++  +KND
Sbjct:  179 SKVVPIASLNPYQSKWTICARVTQKGQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFNDQADKFFPLIELNKVYYFTKGNLKTANKQYTAVKND 272          
BLAST of CX295021 vs. ExPASy Swiss-Prot
Match: RFA1_PONAB (Replication protein A 70 kDa DNA-binding subunit OS=Pongo abelii GN=RPA1 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.494e-21
Identity = 50/107 (46.73%), Postives = 76/107 (71.03%), Query Frame = 3
Query:  393 GPILKNEA---PARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLNL-HKEFHHLKND 701
            GP L + +    ++++PIA+L PYQ +W I ARVT K  +R ++N+RG+ K+FS +L+D + GEIR T FN  VD+F+ +IEV +VY  SKG+L + +K+F  +KND
Sbjct:  170 GPSLSHNSGGTQSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEEKLFSLELVD-ESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKND 275          
BLAST of CX295021 vs. ExPASy Swiss-Prot
Match: RFA1_DROME (Replication protein A 70 kDa DNA-binding subunit OS=Drosophila melanogaster GN=RpA-70 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.371e-19
Identity = 46/90 (51.11%), Postives = 65/90 (72.22%), Query Frame = 3
Query:  432 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLN-LHKEFHHLKN 698
            PI++L+PYQ +W IKARVT+K  +R ++NARG+GK+FS DL+D + GEIR T F    D+FY++I+V  VY ISK  L   +K++  L N
Sbjct:  168 PISSLSPYQNKWVIKARVTSKSGIRTWSNARGEGKLFSMDLMD-ESGEIRATAFKEQCDKFYDLIQVDSVYYISKCQLKPANKQYSSLNN 256          
BLAST of CX295021 vs. ExPASy Swiss-Prot
Match: RFA1_SCHPO (Replication factor A protein 1 OS=Schizosaccharomyces pombe GN=ssb1 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.563e-18
Identity = 46/103 (44.66%), Postives = 70/103 (67.96%), Query Frame = 3
Query:  396 PILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLNL-HKEFHHLKND 701
            P   N     I PI  L+PYQ +W I+ARVT K +++ ++N RG+GK+FS +LLD + GEIR T FN  VD FY+I++ G VY IS+  +N+  K++ +++N+
Sbjct:  169 PAAPNSLSTIIYPIEGLSPYQNKWTIRARVTNKSEVKHWHNQRGEGKLFSVNLLD-ESGEIRATGFNDQVDAFYDILQEGSVYYISRCRVNIAKKQYTNVQNE 270          
BLAST of CX295021 vs. ExPASy Swiss-Prot
Match: RFA1_YEAST (Replication factor A protein 1 OS=Saccharomyces cerevisiae GN=RFA1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.259e-16
Identity = 43/95 (45.26%), Postives = 60/95 (63.16%), Query Frame = 3
Query:  381 FRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSL 665
            F N  P  +   P  I  I  L+PYQ  W IKARV+ KG+++ ++N RGDGK+F+ + LD+  GEIR T FN    +F EI++ G+VY +SK  L
Sbjct:  171 FANENPNSQKTRP--IFAIEQLSPYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDT-SGEIRATAFNDFATKFNEILQEGKVYYVSKAKL 262          
The following BLAST results are available for this feature:
BLAST of CX295021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
RFA1_XENLA1.724e-2533.64Replication protein A 70 kDa DNA-binding subunit O... [more]
RFA1_XENTR2.489e-2432.11Replication protein A 70 kDa DNA-binding subunit O... [more]
RFA1_DANRE2.752e-2353.68Replication protein A 70 kDa DNA-binding subunit O... [more]
RFA1_MOUSE1.156e-2150.53Replication protein A 70 kDa DNA-binding subunit O... [more]
RFA1_HUMAN1.156e-2147.66Replication protein A 70 kDa DNA-binding subunit O... [more]
RFA1_CHICK4.393e-2148.42Replication protein A 70 kDa DNA-binding subunit O... [more]
RFA1_PONAB7.494e-2146.73Replication protein A 70 kDa DNA-binding subunit O... [more]
RFA1_DROME5.371e-1951.11Replication protein A 70 kDa DNA-binding subunit O... [more]
RFA1_SCHPO1.563e-1844.66Replication factor A protein 1 OS=Schizosaccharomy... [more]
RFA1_YEAST7.259e-1645.26Replication factor A protein 1 OS=Saccharomyces ce... [more]

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Properties
Property NameValue
Genbank descriptionC05065G03SK DroRLeaf1 Citrus clementina cDNA clone C05065G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295021 ID=CX295021; Name=CX295021; organism=Citrus clementina; type=EST; length=738bp
GAGGGAATTATGATATTTTAGCAAAGTTGTCCTGTTTCTTTATTATCTTT
TGCCCTTTGTGCAGAATTATTGTTGTGTTGAACATGGAGACTATAATATT
GGATTGCGAACCAATTGGGAATCCAAAAATATTTTCCGAATCTGAGTTAA
CTGCTCAAAAAACTATTCCTAGTAACAATTTGCCGCAGCCAGTTAGAGTT
AATAATTACAGTGCTCCAAATTCCGGCACATTTAATCTGCAGAATTCTGG
TACATTTAATTCTCAAAATCCAGGTTCATTCAGTACTCCAAATTCTGGGA
CATTTAGAGCTCCAAATGCTGGTAGTATTGTGCGGAGTTTCCAACCCACT
GTTCAGCCACCTTATCAACCGCCCCCAAATTTCAGAAATCATGGTCCAAT
ATTGAAGAATGAAGCTCCAGCACGCATCATTCCTATTGCTGCTTTGAATC
CTTATCAGGGGAGGTGGGCTATCAAGGCCAGAGTGACTGCAAAGGGAGAT
CTTCGCCGCTACAACAATGCTCGAGGAGATGGGAAGGTCTTCTCTTTTGA
CCTCCTTGACTCTGATGGAGGGGAGATAAGAGTTACCTGCTTTAATGCTG
TTGTTGACCGCTTCTATGAAATTATTGAGGTTGGTAGAGTCTATTTGATC
TCAAAAGGTAGCTTGAACCTGCACAAAGAATTTCACCATCTGAAGAATGA
TGGGAGATATTTTTGGAGGCAACTTCACTGTGGATCTC
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