CX295021
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX295021 vs. ExPASy Swiss-Prot
Match: RFA1_XENLA (Replication protein A 70 kDa DNA-binding subunit OS=Xenopus laevis GN=rpa1 PE=1 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.724e-25 Identity = 73/217 (33.64%), Postives = 116/217 (53.46%), Query Frame = 3 Query: 63 RIIVVLNMETII---LDCEPIGNPKIFSESELTAQKTIPSNNLPQPVRVNNYSAPNSGTFNLQNSGTFNSQNPGSFSTPNSGTFRAPNAGSIVRSFXXXXXXXXXXXXNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLNL-HKEFHHLKND 701 R+I+V+ ++ + L IGNP+ +++ + PQP SAP LQN NS P S N GT + GS++ + + ++++PIA+LNPYQ +W ++ARVT KG +R ++N+RG+GK+FS +++D + GEIR T FN D+F+ IIEV +VY SKG+L + +K++ +KND Sbjct: 92 RVIIVMELDVLKSADLVMGKIGNPQPYNDGQ------------PQPAAPAPASAPAPAPSKLQN----NSAPPPSM---NRGTSKLFGGGSLLNT----------------------PGGSQSKVVPIASLNPYQSKWTVRARVTNKGQIRTWSNSRGEGKLFSIEMVD-ESGEIRATAFNEQADKFFSIIEVNKVYYFSKGTLKIANKQYTSVKND 266
BLAST of CX295021 vs. ExPASy Swiss-Prot
Match: RFA1_XENTR (Replication protein A 70 kDa DNA-binding subunit OS=Xenopus tropicalis GN=rpa1 PE=2 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 2.489e-24 Identity = 70/218 (32.11%), Postives = 113/218 (51.83%), Query Frame = 3 Query: 63 RIIVVLNMETII---LDCEPIGNPKIFSESELTAQKTIPSN-NLPQPVRVNNYSAPNSGTFNLQNSGTFNSQNPGSFSTPNSGTFRAPNAGSIVRSFXXXXXXXXXXXXNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLNL-HKEFHHLKND 701 R+I+V+ ME + L IGNP +++ + Q P+ + P P + N SAP + N S F GS+V + + ++++PIA+LNPYQ +W ++ARVT KG +R ++N+RG+GK+FS +++D + GEIR T FN D+F+ +IEV +VY SKG+L + +K++ +KND Sbjct: 92 RVIIVMEMEVLKSADLVKGKIGNPHPYNDGQGPPQPAAPAPASAPPPSKPQNISAPPPPSMNRGASKLFGG-------------------GSVVNT----------------------PGGSQSKVVPIASLNPYQSKWTVRARVTNKGQIRTWSNSRGEGKLFSIEMVD-ESGEIRATAFNEQADKFFSLIEVNKVYYFSKGTLKIANKQYTSVKND 267
BLAST of CX295021 vs. ExPASy Swiss-Prot
Match: RFA1_DANRE (Replication protein A 70 kDa DNA-binding subunit OS=Danio rerio GN=rpa1 PE=1 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.752e-23 Identity = 51/95 (53.68%), Postives = 75/95 (78.95%), Query Frame = 3 Query: 420 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLNL-HKEFHHLKND 701 ++++PIA+LNPYQ +W I+ARVT K +R ++N+RGDGK+FS +L+D + GEIR T FN VD+F+ +IE G+V+ ISKG+L + +K+F LKND Sbjct: 169 SKVVPIASLNPYQSKWTIRARVTNKSAIRTWSNSRGDGKLFSMELVD-ESGEIRATGFNNEVDKFFSLIEQGKVFYISKGTLKIANKQFSSLKND 262
BLAST of CX295021 vs. ExPASy Swiss-Prot
Match: RFA1_MOUSE (Replication protein A 70 kDa DNA-binding subunit OS=Mus musculus GN=Rpa1 PE=2 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.156e-21 Identity = 48/95 (50.53%), Postives = 72/95 (75.79%), Query Frame = 3 Query: 420 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLNL-HKEFHHLKND 701 ++++PIA+L PYQ +W I ARVT K +R ++N+RG+GK+FS +L+D + GEIR T FN VD+F+ +IEV +VY SKG+L + +K+F +KND Sbjct: 191 SKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVD-ESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGALKIANKQFSAVKND 284
BLAST of CX295021 vs. ExPASy Swiss-Prot
Match: RFA1_HUMAN (Replication protein A 70 kDa DNA-binding subunit OS=Homo sapiens GN=RPA1 PE=1 SV=2) HSP 1 Score: 103.605 bits (257), Expect = 1.156e-21 Identity = 51/107 (47.66%), Postives = 77/107 (71.96%), Query Frame = 3 Query: 393 GPILKNEA---PARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLNL-HKEFHHLKND 701 GP L + + ++++PIA+L PYQ +W I ARVT K +R ++N+RG+GK+FS +L+D + GEIR T FN VD+F+ +IEV +VY SKG+L + +K+F +KND Sbjct: 170 GPSLSHTSGGTQSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVD-ESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKND 275
BLAST of CX295021 vs. ExPASy Swiss-Prot
Match: RFA1_CHICK (Replication protein A 70 kDa DNA-binding subunit OS=Gallus gallus GN=RPA1 PE=2 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 4.393e-21 Identity = 46/95 (48.42%), Postives = 72/95 (75.79%), Query Frame = 3 Query: 420 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSL-NLHKEFHHLKND 701 ++++PIA+LNPYQ +W I ARVT KG +R ++N+RG+GK+FS +L+D + GEIR T FN D+F+ +IE+ +VY +KG+L +K++ +KND Sbjct: 179 SKVVPIASLNPYQSKWTICARVTQKGQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFNDQADKFFPLIELNKVYYFTKGNLKTANKQYTAVKND 272
BLAST of CX295021 vs. ExPASy Swiss-Prot
Match: RFA1_PONAB (Replication protein A 70 kDa DNA-binding subunit OS=Pongo abelii GN=RPA1 PE=2 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 7.494e-21 Identity = 50/107 (46.73%), Postives = 76/107 (71.03%), Query Frame = 3 Query: 393 GPILKNEA---PARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLNL-HKEFHHLKND 701 GP L + + ++++PIA+L PYQ +W I ARVT K +R ++N+RG+ K+FS +L+D + GEIR T FN VD+F+ +IEV +VY SKG+L + +K+F +KND Sbjct: 170 GPSLSHNSGGTQSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEEKLFSLELVD-ESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKND 275
BLAST of CX295021 vs. ExPASy Swiss-Prot
Match: RFA1_DROME (Replication protein A 70 kDa DNA-binding subunit OS=Drosophila melanogaster GN=RpA-70 PE=1 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 5.371e-19 Identity = 46/90 (51.11%), Postives = 65/90 (72.22%), Query Frame = 3 Query: 432 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLN-LHKEFHHLKN 698 PI++L+PYQ +W IKARVT+K +R ++NARG+GK+FS DL+D + GEIR T F D+FY++I+V VY ISK L +K++ L N Sbjct: 168 PISSLSPYQNKWVIKARVTSKSGIRTWSNARGEGKLFSMDLMD-ESGEIRATAFKEQCDKFYDLIQVDSVYYISKCQLKPANKQYSSLNN 256
BLAST of CX295021 vs. ExPASy Swiss-Prot
Match: RFA1_SCHPO (Replication factor A protein 1 OS=Schizosaccharomyces pombe GN=ssb1 PE=1 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.563e-18 Identity = 46/103 (44.66%), Postives = 70/103 (67.96%), Query Frame = 3 Query: 396 PILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLNL-HKEFHHLKND 701 P N I PI L+PYQ +W I+ARVT K +++ ++N RG+GK+FS +LLD + GEIR T FN VD FY+I++ G VY IS+ +N+ K++ +++N+ Sbjct: 169 PAAPNSLSTIIYPIEGLSPYQNKWTIRARVTNKSEVKHWHNQRGEGKLFSVNLLD-ESGEIRATGFNDQVDAFYDILQEGSVYYISRCRVNIAKKQYTNVQNE 270
BLAST of CX295021 vs. ExPASy Swiss-Prot
Match: RFA1_YEAST (Replication factor A protein 1 OS=Saccharomyces cerevisiae GN=RFA1 PE=1 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 7.259e-16 Identity = 43/95 (45.26%), Postives = 60/95 (63.16%), Query Frame = 3 Query: 381 FRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSL 665 F N P + P I I L+PYQ W IKARV+ KG+++ ++N RGDGK+F+ + LD+ GEIR T FN +F EI++ G+VY +SK L Sbjct: 171 FANENPNSQKTRP--IFAIEQLSPYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDT-SGEIRATAFNDFATKFNEILQEGKVYYVSKAKL 262 The following BLAST results are available for this feature:
BLAST of CX295021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 11
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Sequences
The
following sequences are available for this feature:
EST sequence >CX295021 ID=CX295021; Name=CX295021; organism=Citrus clementina; type=EST; length=738bpback to top |