CX295030

Overview
NameCX295030
Unique NameCX295030
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11767 contig Ccv1_Contig11767:809..1521. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295030 vs. ExPASy Swiss-Prot
Match: LOXC2_ORYSJ (Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 8.463e-75
Identity = 138/237 (58.23%), Postives = 181/237 (76.37%), Query Frame = 3
Query:   15 LGDPDKKPELARPVLGG-KQNPYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDP---DLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDT-GDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVR 710
            LG+PD   +LARPVLGG KQ PYPRRCRTGRP    D  SE R+GN YVPRDE FSEVK   F  KT+ SVLHA VP+ ++A +D    +L FP F  ID LF +GV LP +++ GF ++++PRL++ + D+ GD ILLF+TP  + +DKF W RDEEF+R+TLAG+NPY+I L+ E+PLKS LDP +YGP ESAIT +L+E+++  +++VEEAI QK+LF+LD+HDLFLPYV K+R
Sbjct:  286 LGNPDSNGDLARPVLGGSKQFPYPRRCRTGRPPSKKDPKSETRKGNVYVPRDEEFSEVKNAQFLLKTLQSVLHAAVPAAQSALIDNLSLNLPFPSFFVIDKLFEDGVELPGVEKLGFLHSIVPRLLELLRDSPGDKILLFDTPANVQKDKFAWLRDEEFARETLAGINPYAIELVREFPLKSKLDPAVYGPAESAITADLLEEQMRRVMTVEEAISQKRLFMLDFHDLFLPYVHKIR 522          
BLAST of CX295030 vs. ExPASy Swiss-Prot
Match: LOX2_ARATH (Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=LOX2 PE=1 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.494e-71
Identity = 129/234 (55.13%), Postives = 170/234 (72.65%), Query Frame = 3
Query:   15 LGDPDKKPELARPVLGGKQNPYPRRCRTGRPRCDTDQFSEKREGN-FYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQ 713
            +GDPD  PELARPV+GG  +PYPRRC+TGR  C+TD  SE+R G  FYVPRDE FS  K  +F+ K V + L ++ P +E+  + P   FP+F AI  LF EG+ LP  K  G    LLPR++KA+ +  D+IL F+ P  ++RD+F W RD+EF+RQTLAGLNPYSI+L+ EWPL S LDP +YG P S IT E++E+E+ G ++V+EA+K K+LF+LDYHDL LPYV KVR+
Sbjct:  249 VGDPDNDPELARPVIGGLTHPYPRRCKTGRKPCETDPSSEQRYGGEFYVPRDEEFSTAKGTSFTGKAVLAALPSIFPQIESVLLSPQEPFPHFKAIQNLFEEGIQLP--KDAGLL-PLLPRIIKALGEAQDDILQFDAPVLINRDRFSWLRDDEFARQTLAGLNPYSIQLVEEWPLISKLDPAVYGDPTSLITWEIVEREVKGNMTVDEALKNKRLFVLDYHDLLLPYVNKVRE 479          
BLAST of CX295030 vs. ExPASy Swiss-Prot
Match: LOXC1_ORYSJ (Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2)

HSP 1 Score: 261.922 bits (668), Expect = 2.385e-69
Identity = 133/237 (56.12%), Postives = 173/237 (73.00%), Query Frame = 3
Query:   15 LGDPDKKPELARPVLGG-KQNPYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDP---DLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDT-GDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVR 710
            LG+PD   +LARPVLGG KQ PYPRRCRTGRP    D  SE R+GN YVPRDE FS  K+  F  KTV SVL A VP+ ++  +D    +L FP F  ID LF +GV LP + +  F  +++PRL++ + DT  + IL FETP  + +DKF W RDEEF+R+TLAG+NPY+I L+ E+PLKS LDP +YGP ESAIT +L+E+++  +++VEEAI QK+LF+LD+HDLFLPYV K+R
Sbjct:  269 LGNPDSNGDLARPVLGGNKQFPYPRRCRTGRPPSKKDPKSETRKGNVYVPRDEEFSPEKEDYFLRKTVGSVLQAAVPAAQSLLLDKLKWNLPFPSFFVIDKLFEDGVELPGVDKLNFLESVVPRLLEHLRDTPAEKILRFETPANIQKDKFAWLRDEEFARETLAGINPYAIELVREFPLKSKLDPAVYGPAESAITADLLEEQMRRVMTVEEAISQKRLFMLDFHDLFLPYVHKIR 505          
BLAST of CX295030 vs. ExPASy Swiss-Prot
Match: LOX23_HORVU (Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare GN=LOX2.3 PE=1 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 9.063e-69
Identity = 128/237 (54.01%), Postives = 176/237 (74.26%), Query Frame = 3
Query:   15 LGDPDKKPELARPVLGGKQNPYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEG----FWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQ 713
            LGDPDK  +  RPVLG K++PYPRRCRTGRP+   D  +E R    YVPRDE FS+VK  TFSA T+ S LHA++P++    ++   GF +F AIDAL+++G+ LP     G      N ++PR+V+ IEDT +++L FE PE ++RD+F WFRDEEF+RQTLAGLNP  IR +TE+P+ S LDP +YGP ESA++ E++EK + G ++VEEA+++K+LF+LDYHD+FLPYV +VR+
Sbjct:  246 LGDPDKNIDHKRPVLGTKEHPYPRRCRTGRPKTLYDPETETRSSPVYVPRDEQFSDVKGRTFSATTLRSGLHAILPAV-APLLNNSHGFSHFPAIDALYSDGIPLPVDGHGGNSFNVINDVIPRVVQMIEDTTEHVLRFEVPEMLERDRFSWFRDEEFARQTLAGLNPICIRRLTEFPIVSKLDPAVYGPAESALSKEILEKMMNGRMTVEEAMEKKRLFLLDYHDVFLPYVHRVRE 481          
BLAST of CX295030 vs. ExPASy Swiss-Prot
Match: LOX21_HORVU (Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare GN=LOX2.1 PE=1 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.450e-58
Identity = 125/248 (50.40%), Postives = 160/248 (64.52%), Query Frame = 3
Query:   15 LGDPDKKPE-LARPVLGGKQNPYPRRCRTGRPRCDTDQFSEKR--EGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEG--------FWNTLLPRLVK----AIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQ 713
            LG+PD       RPVLGGK++PYPRRCRTGRPR   D FSE+R  + + YVPRDEAF+E K   F  K   S LHAL   L+TA       FP  SAID L+++     P++ EG           T L  L K    A  +    +  FETPE  DRDKF WFRDEEF+RQT+AG+NP SI+L+TE+P+KS LD   YGP +S IT E++E++I  +++ +EA++ KKLF+LDYHDL LPYV KVR+
Sbjct:  264 LGNPDDDNNPTTRPVLGGKEHPYPRRCRTGRPRSKKDPFSEERSHKEHIYVPRDEAFTERKMGAFDTKKFMSQLHALTTGLKTA-KHKSQSFPSLSAIDQLYDDNFRNQPVQPEGGKLRFVIDLLETELLHLFKLEGAAFLEGIRRVFKFETPEIHDRDKFAWFRDEEFARQTIAGMNPMSIQLVTEFPIKSNLDEATYGPADSLITKEVVEEQIRRVMTADEAVQNKKLFMLDYHDLLLPYVHKVRK 510          
BLAST of CX295030 vs. ExPASy Swiss-Prot
Match: LOX22_HORVU (Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare GN=LOX2.2 PE=1 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.572e-57
Identity = 122/244 (50.00%), Postives = 158/244 (64.75%), Query Frame = 3
Query:   33 KPELARPVLGGKQNPYPRRCRTGRPRCDTDQFSEK---REGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDL--GFPYFSAIDALFNEGVNLPPLKQEG-----FWNTLLPRLVKAIEDTGDN-------ILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQ 713
            KPE  RPVLGGK++PYPRRCRTGRPR  TD  SE+   ++G  YVPRDE F+E K+  F  K + S LH L   L+   V+ D+   FP  ++IDAL+++     P++ EG       + L   LV  ++  G         +  FETPE  D DK  WFRDEEF+RQTLAG+NP SI+L+TE P+ S LD   YGP +S IT ELIEK+I  +++ EEA+ QKKLF+LDYHDL LPYV +VR+
Sbjct:  269 KPESKRPVLGGKEHPYPRRCRTGRPRSKTDPSSEEESHKKGEMYVPRDETFTERKEQAFLTKQLLSQLHGLCTGLK---VNKDILPSFPTLASIDALYDDDFRNQPVQPEGGKVRLILDLLAKELVHLVKLEGAEFVEGIRRVFKFETPEIHDMDKLAWFRDEEFARQTLAGMNPLSIQLVTELPIVSKLDELKYGPADSLITKELIEKQINRIMTAEEAVAQKKLFMLDYHDLLLPYVHRVRK 509          
BLAST of CX295030 vs. ExPASy Swiss-Prot
Match: LOX6_ORYSJ (Probable lipoxygenase 6 OS=Oryza sativa subsp. japonica GN=Os03g0179900 PE=2 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 1.553e-52
Identity = 105/234 (44.87%), Postives = 153/234 (65.38%), Query Frame = 3
Query:   15 LGDPDKKPELARPVLGGKQNPYPRRCRTGRPRCDTDQFSEKREGN---FYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKV 707
            LG+PDK  E  RP+LGG++ PYPRRCRTGRP  DT+  +E R       YVPRDEAF E+KQ  FS+  + +VLH L+PSL  +       F  F  ID L+ EG+ L    QE  +  +   LV+ I+++ + +L ++TP  + +DKF W RD+EF+RQ +AG+NP +I  +  +P  S LDP IYGPPES+IT   I   + G ++V++A+ + KLFI+DYHD +LP+++++
Sbjct:  265 LGNPDKGKEFIRPILGGEKIPYPRRCRTGRPPTDTNMLAESRVEKPHPIYVPRDEAFEELKQGAFSSGRLRAVLHTLIPSLIASISAETHNFQGFHHIDNLYKEGLRLKLGLQEHLFQKI--PLVQKIQESSEGMLRYDTPSILSKDKFAWLRDDEFARQAVAGINPVNIERLQVFPPVSKLDPAIYGPPESSITETHIAGHLNG-LTVQQAMDEAKLFIVDYHDAYLPFLDRI 495          
BLAST of CX295030 vs. ExPASy Swiss-Prot
Match: LOX4_ARATH (Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.649e-52
Identity = 103/236 (43.64%), Postives = 160/236 (67.80%), Query Frame = 3
Query:   15 LGDPDKKPELARPVLGGKQNPYPRRCRTGRPRCDTDQFSEKREGN---FYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTL-LPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPP-ESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKV 707
            +G+PD   ELARP LGG++ PYPRRCRTGR   DTD  SE+R       YVPRDE F E KQ TF+A  + +VLH L+PSL+ + +  D  F  F  ID+L+ EG+ L    Q+  +    LP++V  ++ + + +L ++TP+ + +DK+ W RD+EF+RQ +AG+NP +I  +T +P  S LDPEIYGP   SA+T + I  ++ G ++V++A++  +LF++DYHD++LP+++++
Sbjct:  275 IGNPDISRELARPTLGGREFPYPRRCRTGRSSTDTDMMSERRVEKPLPMYVPRDEQFEESKQNTFAACRLKAVLHNLIPSLKASILAED--FANFGEIDSLYKEGLLLKLGFQDDMFKKFPLPKIVTTLQKSSEGLLRYDTPKIVSKDKYAWLRDDEFARQAIAGINPVNIERVTSYPPVSNLDPEIYGPGLHSALTEDHIIGQLDG-LTVQQALETNRLFMVDYHDIYLPFLDRI 507          
BLAST of CX295030 vs. ExPASy Swiss-Prot
Match: LOX3_ARATH (Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.099e-49
Identity = 103/236 (43.64%), Postives = 156/236 (66.10%), Query Frame = 3
Query:   15 LGDPDKKPELARPVLGGKQNPYPRRCRTGRPRCDTDQFSEKREGN---FYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTL-LPRLV-KAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKV 707
            LG+PDK  EL+RP LGGK+ PYPRRCRTGR    +D+ +E R       YVPRDE F E KQ TF+A  + +VLH L+PSL+ + V  D  F  F  ID L+ EG+ L    Q+  +    LP++V   ++++   +L ++TP+ + +DK  W RD+EF+RQ +AG+NP +I  +  +P  S LDP+IYGP  SA+T + I   + G  SV++A+++ +L++LDYHD+FLP+++++
Sbjct:  269 LGNPDKSSELSRPKLGGKEVPYPRRCRTGRQSTVSDKDAESRVEKPLPMYVPRDEQFEESKQDTFAAGRLKAVLHHLIPSLKASIVAED--FADFGEIDRLYKEGLLLKLGFQDDIFKKFPLPKVVVDTLQESTKGLLKYDTPKILSKDKNAWLRDDEFARQAIAGINPVNIERVKTFPPVSNLDPKIYGPQHSALTDDHIIGHLDG-FSVQQALEENRLYMLDYHDIFLPFLDRI 501          
BLAST of CX295030 vs. ExPASy Swiss-Prot
Match: LOX6_ARATH (Lipoxygenase 6, choloroplastic OS=Arabidopsis thaliana GN=LOX6 PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.042e-48
Identity = 104/244 (42.62%), Postives = 148/244 (60.66%), Query Frame = 3
Query:   15 LGDPDKKPELARPVLGGKQNPYPRRCRTGRPRCDTDQFSEKR---EGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQE---------GFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGM-ISVEEAIKQKKLFILDYHDLFLPYVEKV 707
            LGDP +K E  RPVLG  + PYPRRCRTGRP    D   E R   +  FYVPRDE F E+K+ TF A    ++ H LVPS+  A  + D+ F  FS ID L+   + L   + +         GF N +L        +  + +L ++TP  +  D+F W RD EF RQ LAG+NP +I L+ E P++S LDP +YGP ES +T E+I +E+     ++E+A+++K+LF++DYHD+ LP+VEK+
Sbjct:  263 LGDP-RKTERVRPVLGVPETPYPRRCRTGRPLVSKDPPCESRGKEKEEFYVPRDEVFEEIKRDTFRAGRFKALFHNLVPSIAAALSNLDIPFTCFSDIDNLYKSNIVLGHTEPKDTGLGGFIGGFMNGIL--------NVTETLLKYDTPAVIKWDRFAWLRDNEFGRQALAGVNPVNIELLKELPIRSNLDPALYGPQESVLTEEIIAREVEHYGTTIEKALEEKRLFLVDYHDILLPFVEKI 497          
The following BLAST results are available for this feature:
BLAST of CX295030 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
LOXC2_ORYSJ8.463e-7558.23Probable lipoxygenase 8, chloroplastic OS=Oryza sa... [more]
LOX2_ARATH1.494e-7155.13Lipoxygenase 2, chloroplastic OS=Arabidopsis thali... [more]
LOXC1_ORYSJ2.385e-6956.12Lipoxygenase 7, chloroplastic OS=Oryza sativa subs... [more]
LOX23_HORVU9.063e-6954.01Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare... [more]
LOX21_HORVU1.450e-5850.40Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare... [more]
LOX22_HORVU3.572e-5750.00Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare... [more]
LOX6_ORYSJ1.553e-5244.87Probable lipoxygenase 6 OS=Oryza sativa subsp. jap... [more]
LOX4_ARATH2.649e-5243.64Lipoxygenase 4, chloroplastic OS=Arabidopsis thali... [more]
LOX3_ARATH2.099e-4943.64Lipoxygenase 3, chloroplastic OS=Arabidopsis thali... [more]
LOX6_ARATH1.042e-4842.62Lipoxygenase 6, choloroplastic OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionC05065G12SK DroRLeaf1 Citrus clementina cDNA clone C05065G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295030 ID=CX295030; Name=CX295030; organism=Citrus clementina; type=EST; length=713bp
GATTCGGCCGAGGTCTTGGAGATCCAGACAAGAAACCTGAATTAGCAAGG
CCTGTGCTTGGAGGCAAACAAAACCCTTATCCTAGACGTTGCAGAACTGG
ACGCCCACGGTGTGACACAGATCAATTTTCGGAGAAAAGAGAGGGAAACT
TTTATGTTCCAAGGGATGAAGCATTCTCGGAGGTAAAGCAGCTAACATTT
TCAGCAAAGACGGTGTACTCAGTGTTGCATGCGTTGGTACCATCCTTAGA
AACCGCCTTTGTCGATCCTGATCTGGGGTTTCCATACTTCTCTGCTATTG
ACGCACTCTTCAATGAAGGAGTCAACTTGCCTCCACTCAAACAGGAAGGT
TTTTGGAACACACTGCTTCCCAGATTGGTTAAGGCAATTGAGGATACAGG
AGATAATATTTTGCTGTTTGAGACGCCAGAAACAATGGACAGAGACAAAT
TCTTTTGGTTTAGGGATGAGGAATTTTCTAGGCAAACTCTCGCTGGTCTC
AACCCGTATAGCATAAGGTTGATCACGGAATGGCCGTTGAAAAGCACACT
CGATCCTGAAATTTACGGACCACCAGAATCAGCAATTACCACAGAATTGA
TTGAAAAAGAAATTGGAGGAATGATTTCTGTTGAAGAGGCTATAAAACAA
AAGAAGTTGTTCATCTTAGATTACCATGACCTATTTTTACCATATGTGGA
AAAAGTGAGACAA
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