CX295037

Overview
NameCX295037
Unique NameCX295037
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15530 contig Ccv1_Contig15530:31..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295037 vs. ExPASy Swiss-Prot
Match: PM1_SOYBN (18 kDa seed maturation protein OS=Glycine max GN=GMPM1 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.690e-35
Identity = 79/150 (52.67%), Postives = 97/150 (64.67%), Query Frame = 3
Query:   54 QSMKESXXXXXXXXXXGMEKTKATAQEKVDKMKAHDPVEKEMATEKKEERRMQAELEKQEAREHNAAAKQATGGLGY---------TTADSYSQSTTGMHGRPTGGHQMSALAGHGTGQPAAQVIEGVVGSHPIGVNAGTGHN-PAHNTR 473
            +S+KE+          GMEKTKAT QEK ++M A DPV+KE+AT+KKE +  QAEL+KQ AR+HN AAKQ+    G+         T   + + STTG +G+P G HQ SA+ GHGTGQP   V EGVVGSHPIG N G G    AHNTR
Sbjct:    9 ESIKETATNIGASAKAGMEKTKATVQEKAERMTARDPVQKELATQKKEAKMNQAELDKQAARQHNTAAKQSATTAGHMGHGHHTTGTGTGTATYSTTGEYGQPMGAHQTSAMPGHGTGQPTGHVTEGVVGSHPIGTNRGPGGTATAHNTR 158          
BLAST of CX295037 vs. ExPASy Swiss-Prot
Match: LEA13_GOSHI (Late embryogenesis abundant protein D-113 OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 6.452e-19
Identity = 59/114 (51.75%), Postives = 68/114 (59.65%), Query Frame = 3
Query:   51 MQSMKESXXXXXXXXXXGMEKTKATAQEKVDKMKAHDPVEKEMATEKKEERRMQAELEKQEAREHNAAAKQ----ATGGLGYTTADSYSQSTTGMHGRPTGGHQMSALAGHGTG 380
            MQSMK++          GMEK KA+ QEKVD+MK  DP EKEMA E+KEER+  AEL KQEAR HNA A        GG GYTTA  Y+   TG +G  TGGH        G+G
Sbjct:    1 MQSMKDAAASAKA----GMEKAKASMQEKVDQMKTRDPNEKEMARERKEERQEDAELRKQEARHHNATAGHVGGGGIGGTGYTTA-GYNIGDTGGYG-GTGGHDNRGYPTAGSG 108          
BLAST of CX295037 vs. ExPASy Swiss-Prot
Match: LEA11_HELAN (11 kDa late embryogenesis abundant protein OS=Helianthus annuus PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.877e-18
Identity = 52/96 (54.17%), Postives = 64/96 (66.67%), Query Frame = 3
Query:   57 SMKESXXXXXXXXXXGMEKTKATAQEKVDKMKAHDPVEKEMATEKKEERRMQAELEKQEAREHNAAAKQATG-GLGYTTADSYSQSTTGMHGRPTG 341
            S KE+          GMEKTKA+ QEK +KM AHDP++KEMA EKKEER+ +AE EKQ A+EHNAA KQ TG G G     ++S +TT + G  TG
Sbjct:   10 SAKETAANVAASAKAGMEKTKASLQEKGEKMTAHDPMQKEMAREKKEERKHEAEYEKQAAKEHNAAQKQTTGIGTG-----THSYTTTNVTGHRTG 100          
BLAST of CX295037 vs. ExPASy Swiss-Prot
Match: LE25_SOLLC (Protein LE25 OS=Solanum lycopersicum GN=LE25 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.303e-11
Identity = 38/74 (51.35%), Postives = 49/74 (66.22%), Query Frame = 3
Query:  102 GMEKTKATAQEKVDKMKAHDPVEKEMATEKKEERRMQAELEKQEAREHNAAAKQ--ATGGLGYTTADSYSQSTT 317
            GMEKTKA  QEK ++M   DP++KEMATEKKE+R   AE+ K++A+  +AA KQ  AT G G T   +    TT
Sbjct:   14 GMEKTKANVQEKAERMTTRDPLKKEMATEKKEDRVAAAEMGKRDAKAQHAAEKQGAATTGTGTTGYGATGNHTT 87          
The following BLAST results are available for this feature:
BLAST of CX295037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PM1_SOYBN1.690e-3552.6718 kDa seed maturation protein OS=Glycine max GN=G... [more]
LEA13_GOSHI6.452e-1951.75Late embryogenesis abundant protein D-113 OS=Gossy... [more]
LEA11_HELAN1.877e-1854.1711 kDa late embryogenesis abundant protein OS=Heli... [more]
LE25_SOLLC1.303e-1151.35Protein LE25 OS=Solanum lycopersicum GN=LE25 PE=2 ... [more]
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Properties
Property NameValue
Genbank descriptionC05065H08SK DroRLeaf1 Citrus clementina cDNA clone C05065H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295037 ID=CX295037; Name=CX295037; organism=Citrus clementina; type=EST; length=701bp
GGTTAGCATAATTGCATTCAAGGCAAAGAAGAAATTTGAAGAAAGTGAAA
ATGCAGTCCATGAAGGAATCGGCAGCTAACGTTGCGGCCTCTGCCAAGGC
TGGCATGGAGAAAACTAAAGCCACGGCCCAAGAGAAGGTTGATAAAATGA
AAGCGCATGATCCAGTAGAGAAAGAAATGGCGACGGAGAAGAAAGAGGAA
AGAAGAATGCAAGCGGAGCTCGAGAAGCAGGAGGCTCGTGAGCACAATGC
GGCGGCAAAGCAAGCGACGGGTGGGCTTGGCTATACAACAGCTGACAGCT
ACTCGCAGTCGACCACTGGGATGCACGGTCGTCCGACTGGAGGCCATCAG
ATGTCGGCCCTTGCCGGTCATGGAACAGGGCAACCGGCTGCGCAGGTGAT
TGAAGGGGTGGTGGGGTCGCATCCGATTGGAGTCAATGCTGGGACGGGCC
ACAACCCCGCACATAACACGCGAGTTGGGGGAGGTGGGGGAGCCACTGGA
TATGGCACTGGTGGTTCTTACACTTAGATTTTTTTTTATGAAGTTGGCCT
TTGTGTTTTATGTAATAATGGTCAATTTGTAAGAATGAGGTTGCATGATC
CTCAACTGTACTTTCTGTTTGGCTTCGTGTTTATCTGGCTAGCAGCGTAT
TATCATGTGATGTAATGTGTGATGTGTTGTTGCCCTTTTATTATATATGT
T
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