CX295041

Overview
NameCX295041
Unique NameCX295041
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295041 vs. ExPASy Swiss-Prot
Match: DRP1E_ARATH (Dynamin-related protein 1E OS=Arabidopsis thaliana GN=DRP1E PE=1 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 6.270e-56
Identity = 103/151 (68.21%), Postives = 129/151 (85.43%), Query Frame = 2
Query:    2 FRDEGRKTVIRLVDMEASYLTVEFFRKLPQEVEK--AGNPGNSGNTASQAVDRYSDGHFRRIGSNVSSYVGMVSETLRTTIPKAIVYCQVREAKLSLLNHFYTQIGRKEAKQLGQLLDEDPAMMERRLQCAKRLELYKAARDEIDSVSWAR 448
            FR+E +K+VIRLVDME++YLT EFFRKLPQE+E+    +   + + +S  +D+Y DGHFRRI SNVS+YV MVS+TLR TIPKA VYCQVR+AKL+LLN+FY+QI ++E KQLGQLLDEDPA+M+RRL+CAKRLELYK ARDEID+V+W R
Sbjct:  474 FREESKKSVIRLVDMESAYLTAEFFRKLPQEIERPVTNSKNQTASPSSATLDQYGDGHFRRIASNVSAYVNMVSDTLRNTIPKACVYCQVRQAKLALLNYFYSQISKREGKQLGQLLDEDPALMDRRLECAKRLELYKKARDEIDAVAWVR 624          
BLAST of CX295041 vs. ExPASy Swiss-Prot
Match: DRP1C_ARATH (Dynamin-related protein 1C OS=Arabidopsis thaliana GN=DRP1C PE=1 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 1.954e-49
Identity = 98/147 (66.67%), Postives = 116/147 (78.91%), Query Frame = 2
Query:    2 FRDEGRKTVIRLVDMEASYLTVEFFRKLPQEVEKAGNPGNSGNTASQAVDRYSDGHFRRIGSNVSSYVGMVSETLRTTIPKAIVYCQVREAKLSLLNHFYTQIGRKEAKQLGQLLDEDPAMMERRLQCAKRLELYKAARDEIDSVSW 442
            FRDE RKTV+RLVDME+SYLTVEFFRKL  E EK     N  N  +   D YSD HFR+IGSNVS+Y+ MV +TLR ++PKA+VYCQVREAK SLLN FY Q+GRKE ++LG +LDEDP +MERR   AKRLELYK ARD+ID+V+W
Sbjct:  469 FRDESRKTVLRLVDMESSYLTVEFFRKLHLEPEK--EKPNPRNAPAPNADPYSDNHFRKIGSNVSAYINMVCDTLRNSLPKAVVYCQVREAKRSLLNFFYAQVGRKEKEKLGAMLDEDPQLMERRGTLAKRLELYKQARDDIDAVAW 613          
BLAST of CX295041 vs. ExPASy Swiss-Prot
Match: DRP1D_ARATH (Dynamin-related protein 1D OS=Arabidopsis thaliana GN=DRP1D PE=2 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 9.696e-49
Identity = 94/149 (63.09%), Postives = 121/149 (81.21%), Query Frame = 2
Query:    2 FRDEGRKTVIRLVDMEASYLTVEFFRKLPQEVEKAGNPGNSGNTASQAVDRYSDGHFRRIGSNVSSYVGMVSETLRTTIPKAIVYCQVREAKLSLLNHFYTQIGRKEAKQLGQLLDEDPAMMERRLQCAKRLELYKAARDEIDSVSWAR 448
            FR+E  K+V+RLVDME+SYLTV+FFRKL  E +       S ++ + A+D+Y DGHFR+I SNV++Y+ MV+ETL  TIPKA+V+CQVR+AKLSLLN+FY QI + + K+LGQLLDE+PA+MERR+QCAKRLELYK ARDEID+  W R
Sbjct:  469 FREESMKSVLRLVDMESSYLTVDFFRKLHVESQNM-----SLSSPTSAIDQYGDGHFRKIASNVAAYIKMVAETLVNTIPKAVVHCQVRQAKLSLLNYFYAQISQSQGKRLGQLLDENPALMERRMQCAKRLELYKKARDEIDAAVWVR 612          
BLAST of CX295041 vs. ExPASy Swiss-Prot
Match: SDL5A_SOYBN (Dynamin-related protein 5A OS=Glycine max PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.919e-45
Identity = 87/148 (58.78%), Postives = 116/148 (78.38%), Query Frame = 2
Query:    5 RDEGRKTVIRLVDMEASYLTVEFFRKLPQEVEKAGNPGNSGNTASQAVDRYSDGHFRRIGSNVSSYVGMVSETLRTTIPKAIVYCQVREAKLSLLNHFYTQIGRKEAKQLGQLLDEDPAMMERRLQCAKRLELYKAARDEIDSVSWAR 448
            RDE ++  ++LVDME  YLTV+FFRKLPQ+V+K GNP +S        DRY+D + RRIG+ + SYV MV  TLR +IPK+IVYCQVREAK SLL+HF+T++G+ E K+L  LL+EDPA+MERR   AKRLELY++A+ EID+V+W++
Sbjct:  469 RDESKRATLQLVDMECGYLTVDFFRKLPQDVDKGGNPTHS------IFDRYNDSYLRRIGTTILSYVNMVCATLRNSIPKSIVYCQVREAKRSLLDHFFTELGKMETKRLSSLLNEDPAIMERRSALAKRLELYRSAQAEIDAVAWSK 610          
BLAST of CX295041 vs. ExPASy Swiss-Prot
Match: SDLCA_SOYBN (Dynamin-related protein 12A OS=Glycine max PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.504e-45
Identity = 87/148 (58.78%), Postives = 116/148 (78.38%), Query Frame = 2
Query:    5 RDEGRKTVIRLVDMEASYLTVEFFRKLPQEVEKAGNPGNSGNTASQAVDRYSDGHFRRIGSNVSSYVGMVSETLRTTIPKAIVYCQVREAKLSLLNHFYTQIGRKEAKQLGQLLDEDPAMMERRLQCAKRLELYKAARDEIDSVSWAR 448
            RDE ++  ++LVDME  YLTV+FFRKLPQ+V+K GNP +S        DRY+D + RRIG+ + SYV MV  TLR +IPK+IVYCQVREAK SLL+HF+T++G+ E K+L  LL+EDPA+MERR   AKRLELY++A+ EID+V+W++
Sbjct:  469 RDESKRATLQLVDMECGYLTVDFFRKLPQDVDKGGNPTHS------ICDRYNDSYLRRIGTTILSYVNMVCATLRHSIPKSIVYCQVREAKRSLLDHFFTELGKMEIKRLSSLLNEDPAIMERRSALAKRLELYRSAQAEIDAVAWSK 610          
BLAST of CX295041 vs. ExPASy Swiss-Prot
Match: DRP1A_ARATH (Dynamin-related protein 1A OS=Arabidopsis thaliana GN=DRP1A PE=1 SV=3)

HSP 1 Score: 178.718 bits (452), Expect = 2.471e-44
Identity = 88/148 (59.46%), Postives = 114/148 (77.03%), Query Frame = 2
Query:    5 RDEGRKTVIRLVDMEASYLTVEFFRKLPQEVEKAGNPGNSGNTASQAVDRYSDGHFRRIGSNVSSYVGMVSETLRTTIPKAIVYCQVREAKLSLLNHFYTQIGRKEAKQLGQLLDEDPAMMERRLQCAKRLELYKAARDEIDSVSWAR 448
            R+  +K  ++LVDME SYLTV+FFRKLPQ+VEK GNP +S        DRY+D + RRIGSNV SYV MV   LR +IPK+IVYCQVREAK SLL+HF+ ++G  + K+L  LL+EDPA+MERR   +KRLELY+AA+ EID+V+W++
Sbjct:  469 REGSKKATLQLVDMECSYLTVDFFRKLPQDVEKGGNPTHS------IFDRYNDSYLRRIGSNVLSYVNMVCAGLRNSIPKSIVYCQVREAKRSLLDHFFAELGTMDMKRLSSLLNEDPAIMERRSAISKRLELYRAAQSEIDAVAWSK 610          
BLAST of CX295041 vs. ExPASy Swiss-Prot
Match: DRP1B_ARATH (Dynamin-related protein 1B OS=Arabidopsis thaliana GN=DRP1B PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.506e-44
Identity = 88/148 (59.46%), Postives = 114/148 (77.03%), Query Frame = 2
Query:    5 RDEGRKTVIRLVDMEASYLTVEFFRKLPQEVEKAGNPGNSGNTASQAVDRYSDGHFRRIGSNVSSYVGMVSETLRTTIPKAIVYCQVREAKLSLLNHFYTQIGRKEAKQLGQLLDEDPAMMERRLQCAKRLELYKAARDEIDSVSWAR 448
            RDE RK  + LVDME+ YLTVEFFRKLPQ+ EK GNP +S        DRY+D + RRIGSNV SYV MV   LR +IPK+IVYCQVREAK SLL+ F+T++G+KE  +L +LLDEDPA+ +RR   AKRLELY++A+ +I++V+W++
Sbjct:  469 RDESRKATLLLVDMESGYLTVEFFRKLPQDSEKGGNPTHS------IFDRYNDAYLRRIGSNVLSYVNMVCAGLRNSIPKSIVYCQVREAKRSLLDIFFTELGQKEMSKLSKLLDEDPAVQQRRTSIAKRLELYRSAQTDIEAVAWSK 610          
The following BLAST results are available for this feature:
BLAST of CX295041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
DRP1E_ARATH6.270e-5668.21Dynamin-related protein 1E OS=Arabidopsis thaliana... [more]
DRP1C_ARATH1.954e-4966.67Dynamin-related protein 1C OS=Arabidopsis thaliana... [more]
DRP1D_ARATH9.696e-4963.09Dynamin-related protein 1D OS=Arabidopsis thaliana... [more]
SDL5A_SOYBN2.919e-4558.78Dynamin-related protein 5A OS=Glycine max PE=2 SV=... [more]
SDLCA_SOYBN6.504e-4558.78Dynamin-related protein 12A OS=Glycine max PE=1 SV... [more]
DRP1A_ARATH2.471e-4459.46Dynamin-related protein 1A OS=Arabidopsis thaliana... [more]
DRP1B_ARATH5.506e-4459.46Dynamin-related protein 1B OS=Arabidopsis thaliana... [more]
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Properties
Property NameValue
Genbank descriptionC05065H12SK DroRLeaf1 Citrus clementina cDNA clone C05065H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295041 ID=CX295041; Name=CX295041; organism=Citrus clementina; type=EST; length=684bp
GTTCCGTGATGAGGGCAGGAAGACAGTTATCCGTTTGGTGGATATGGAAG
CTTCATATTTAACAGTTGAATTCTTTCGTAAGCTTCCCCAGGAAGTGGAG
AAAGCAGGAAATCCTGGAAATTCTGGAAATACTGCTTCCCAGGCAGTTGA
TCGGTATTCAGATGGTCACTTTAGGAGGATAGGATCAAATGTGTCCTCAT
ATGTGGGTATGGTGTCGGAAACACTTAGGACCACTATTCCTAAGGCAATT
GTTTATTGCCAAGTTAGGGAGGCCAAGCTGTCATTATTAAATCACTTCTA
CACTCAAATAGGCAGGAAAGAGGCTAAGCAGCTTGGACAATTGTTGGATG
AAGACCCAGCCATGATGGAAAGGAGACTACAGTGTGCTAAGAGGCTTGAA
TTGTACAAGGCAGCGAGGGATGAGATAGATTCAGTTTCATGGGCTCGATG
AGATTAATTCGCATTTGCTACTACGCTGTATTATAGTCATGCAGATGAAT
GATTCATATCTTGCAGTCTTTTTGTTTAGTCAACTGTTTGACGCTTGAAA
TTCTTTGTTTTCTTTTTTTCTAGCATAGATGTGCTATTCATTACCGTATT
GTATGTAGATTGATTGGGCTGGGAAGTTGGAACCGTAGATTCTTGTAGCG
TCGTCCATGTAATACAGTAATAGTAATCTTATTT
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