CX295043

Overview
NameCX295043
Unique NameCX295043
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX295043 vs. ExPASy Swiss-Prot
Match: PPR58_ARATH (Pentatricopeptide repeat-containing protein At1g26460, mitochondrial OS=Arabidopsis thaliana GN=At1g26460 PE=1 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.176e-76
Identity = 140/233 (60.09%), Postives = 183/233 (78.54%), Query Frame = 2 
Query:    5 KWLERMLQAGKDSLPDDETYDLLISLLFSKGEIDSSLKYIDMALKSGYMLSMNVFTECVRGCVDERRPDALVSIIKKCKTMDQNKALCPTWNLCIIIAEVAVQEDNSELAFYALEFLARWMARGENARPPVLLSADEGLVVSVLGTAGRTFNQKLLDASWAVLRRSLRQKRVPKPESYLGKIYAHASMGDLQRAFITLNEFETAYGDSIID-MEEIFSPFTSLYPLVVACSRK 700
            K LERML  GKDSLPDDE+YDL+I + F  G+ D ++K +D ALKSGYMLS +VFTECVR CV + R D LVSII++CK +D+NK+LCP+W LC  IAEVA+QEDNS+LAFYA EF+ +W+ RGE ARP V+ S DEGLVV+ L +A RT +  L++ SW +L++SLR ++   P SY+ KI A+AS+G+LQ+AF +L+E E+AY DS  + +EE+ SPFTSLYPLVVACS+K
Sbjct:  212 KLLERMLLLGKDSLPDDESYDLVIGMHFGVGKNDEAMKVMDTALKSGYMLSTSVFTECVRSCVAKGRTDTLVSIIERCKAVDRNKSLCPSWILCNYIAEVAIQEDNSKLAFYAFEFMFKWITRGEMARPSVIFSVDEGLVVAGLASAARTCSSSLVEGSWTILKQSLRGRKAANPASYIAKINAYASLGNLQKAFTSLHELESAYADSEKEVVEEMLSPFTSLYPLVVACSKK 444
The following BLAST results are available for this feature:
BLAST of CX295043 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PPR58_ARATH1.176e-7660.09Pentatricopeptide repeat-containing protein At1g26... [more]
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Properties
Property NameValue
Genbank descriptionC05068A02SK DroRLeaf1 Citrus clementina cDNA clone C05068A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295043 ID=CX295043; Name=CX295043; organism=Citrus clementina; type=EST; length=706bp
TCAGAAGTGGCTCGAACGGATGCTCCAAGCAGGGAAGGATTCCCTGCCTG
ATGATGAGACATATGACTTACTTATCAGCCTGCTGTTCTCAAAGGGCGAG
ATTGATTCTTCCTTGAAATATATAGACATGGCTTTGAAATCTGGTTATAT
GCTGTCTATGAATGTGTTTACTGAATGTGTGCGGGGCTGTGTTGATGAGC
GAAGGCCAGATGCGTTGGTATCCATTATTAAGAAGTGCAAGACAATGGAT
CAAAATAAAGCTCTTTGTCCTACCTGGAACTTGTGCATCATTATTGCAGA
AGTTGCAGTTCAGGAAGATAACAGTGAGTTAGCATTTTATGCCCTGGAAT
TCTTGGCCAGATGGATGGCGCGTGGTGAGAATGCAAGGCCTCCTGTTCTG
CTTTCTGCAGATGAAGGACTGGTCGTGTCAGTGCTTGGAACTGCAGGTAG
GACCTTCAATCAAAAACTATTGGATGCATCATGGGCGGTCCTACGGCGCT
CTTTGAGACAAAAGAGGGTCCCTAAACCTGAATCTTATCTGGGAAAAATA
TATGCACATGCATCAATGGGAGATCTACAAAGGGCTTTTATCACCCTGAA
TGAATTTGAGACTGCCTATGGCGATTCCATCATAGACATGGAAGAAATAT
TTTCTCCCTTTACCTCTTTATATCCATTGGTTGTGGCCTGCTCCAGAAAG
GTTTTG
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