CX295051

Overview
NameCX295051
Unique NameCX295051
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295051_ssr11 microsatellite CX295051_ssr11:11..22. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig82 contig Ccv1_Contig82:147..874. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295051 vs. ExPASy Swiss-Prot
Match: MAOX_POPTR (NADP-dependent malic enzyme OS=Populus trichocarpa PE=2 SV=3)

HSP 1 Score: 415.231 bits (1066), Expect = 1.754e-115
Identity = 202/222 (90.99%), Postives = 214/222 (96.40%), Query Frame = 3
Query:   63 MESTMKEMRDGASVLDFDSKSTVEGGVEDVYGEDRATEDQLVTPWTISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRP 728
            MEST+KEMRDGASVLD D KSTV GGVEDVYGEDRATEDQLVTPWTISVASGY LLRDP HNKGLAFTEKERDAHYLRGLLPP  ISQQLQEKKLMN+IRQY++PLQKY AMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIF+RPQGLYISLKEKGK+L+VLKNWP++SIQVIVVTDGERILGLGDLGCQG+GIPVGKL+LYTALGG+RP
Sbjct:    1 MESTLKEMRDGASVLDMDPKSTVGGGVEDVYGEDRATEDQLVTPWTISVASGYTLLRDPHHNKGLAFTEKERDAHYLRGLLPPTTISQQLQEKKLMNTIRQYQLPLQKYTAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFKRPQGLYISLKEKGKVLDVLKNWPQKSIQVIVVTDGERILGLGDLGCQGIGIPVGKLSLYTALGGVRP 222          
BLAST of CX295051 vs. ExPASy Swiss-Prot
Match: MAOX_VITVI (NADP-dependent malic enzyme OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 403.29 bits (1035), Expect = 6.898e-112
Identity = 196/222 (88.29%), Postives = 212/222 (95.50%), Query Frame = 3
Query:   63 MESTMKEMRDGASVLDFDSKSTVEGGVEDVYGEDRATEDQLVTPWTISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRP 728
            MEST+K++RDGASVLD D K+TV GGVED+YGED ATEDQLVTPWT+SVASGY LLRDPRHNKGLAF +KERDAHYL GLLPP V +Q+LQE+KLMNSIRQY+VPLQKY+AMM+L+ERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPER IQVIVVTDGERILGLGDLGCQGMGIPVGKL+LYTALGG+RP
Sbjct:    1 MESTLKDIRDGASVLDLDPKATVGGGVEDLYGEDFATEDQLVTPWTVSVASGYSLLRDPRHNKGLAFNDKERDAHYLCGLLPPVVSTQELQERKLMNSIRQYQVPLQKYMAMMDLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERRIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRP 222          
BLAST of CX295051 vs. ExPASy Swiss-Prot
Match: MAOC_FLAPR (NADP-dependent malic enzyme, chloroplastic OS=Flaveria pringlei GN=MODA PE=2 SV=1)

HSP 1 Score: 357.836 bits (917), Expect = 3.323e-98
Identity = 172/236 (72.88%), Postives = 203/236 (86.02%), Query Frame = 3
Query:   36 KAEKVKRVRMESTMKEMRDGASVLDFDSKS-----TVEGGVEDVYGEDRATEDQLVTPWTISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRP 728
            + E+   V ++  +K++    +V   DS+S      V GGVEDVYGED ATED  +TPW++SVASGY LLRDP HNKGLAFTEKERDAHYLRGLLPP V++  LQ KK+M++IRQYEVPLQ+Y AMM+L+ERNERLFYKLLI+N+EELLP+VYTPTVGEACQKYG+IF+ PQGLYISLK+KGK+LE+LKNWP++ IQVIVVTDGERILGLGDLGCQGMGIPVGKL+LYTALGGIRP
Sbjct:   43 RPERSVGVSVDGAVKDVNAPVAVEVADSESKKPTAVVGGGVEDVYGEDSATEDHFITPWSVSVASGYSLLRDPHHNKGLAFTEKERDAHYLRGLLPPVVVNHDLQVKKMMHNIRQYEVPLQRYQAMMDLQERNERLFYKLLIENIEELLPIVYTPTVGEACQKYGTIFKNPQGLYISLKDKGKVLEILKNWPQKKIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGIRP 278          
BLAST of CX295051 vs. ExPASy Swiss-Prot
Match: MAOX_PHAVU (NADP-dependent malic enzyme OS=Phaseolus vulgaris GN=ME1 PE=2 SV=1)

HSP 1 Score: 355.91 bits (912), Expect = 1.263e-97
Identity = 170/198 (85.86%), Postives = 188/198 (94.95%), Query Frame = 3
Query:  135 GGVEDVYGEDRATEDQLVTPWTISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRP 728
            GGV D+YGED ATED L+TPWT SVASG  LLRDPR+NKGLAFTE ERDAHYLRGLLPP+V +Q+LQEK+LM+++RQYEVPL +Y+A+M+L+ERNERLFYKLLIDNV ELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPE+SIQVIVVTDGERILGLGDLGCQGMGIPVGKL+LYTALGG+RP
Sbjct:   23 GGVRDLYGEDSATEDHLITPWTFSVASGCSLLRDPRYNKGLAFTEGERDAHYLRGLLPPSVFNQELQEKRLMHNLRQYEVPLHRYMALMDLQERNERLFYKLLIDNVAELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPEKSIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRP 220          
BLAST of CX295051 vs. ExPASy Swiss-Prot
Match: MAOC_SOLLC (NADP-dependent malic enzyme, chloroplastic (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 348.591 bits (893), Expect = 2.016e-95
Identity = 166/203 (81.77%), Postives = 188/203 (92.61%), Query Frame = 3
Query:  120 KSTVEGGVEDVYGEDRATEDQLVTPWTISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRP 728
            +STV GGV+DVYGED ATEDQ +TPWT+SVASG+ LLR+P +NKGLAF+E+ERD HYLRGLLPP VIS  LQ KK+MNSIR+Y+VPLQ+Y+AMM+L+E NERLFYKLLIDNVEELLP+VYTPTVGEACQKYG IF+RPQGL+ SLKEKGKI EVLKNWPE+ IQVIVVTDGERILGLGDLGCQGMGIPVGKL+LY+ALGGIRP
Sbjct:    4 ESTVTGGVQDVYGEDSATEDQSITPWTLSVASGFSLLRNPHYNKGLAFSERERDTHYLRGLLPPVVISHDLQVKKMMNSIRKYDVPLQRYMAMMDLQEMNERLFYKLLIDNVEELLPIVYTPTVGEACQKYGWIFKRPQGLFFSLKEKGKIHEVLKNWPEKKIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYSALGGIRP 206          
BLAST of CX295051 vs. ExPASy Swiss-Prot
Match: MAOC_FLATR (NADP-dependent malic enzyme, chloroplastic OS=Flaveria trinervia GN=MOD1 PE=2 SV=1)

HSP 1 Score: 344.739 bits (883), Expect = 2.911e-94
Identity = 161/202 (79.70%), Postives = 185/202 (91.58%), Query Frame = 3
Query:  123 STVEGGVEDVYGEDRATEDQLVTPWTISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRP 728
            + V GGVED+YGED ATED  +TPW++SVASGY LLRDP HNKGLAFTEKERDAH+LRGLLPP V++  LQ KK+M++IRQY+VPLQ+Y AMM+L++RNERLFYKLLI+NVEELLP+VYTPTVGEACQKYGSIF   QGL+ISLK+KG+ILE+LKNWP + IQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGG+RP
Sbjct:   77 AAVGGGVEDMYGEDTATEDHYITPWSVSVASGYSLLRDPHHNKGLAFTEKERDAHFLRGLLPPVVVNHDLQVKKMMHNIRQYQVPLQRYQAMMDLQQRNERLFYKLLIENVEELLPIVYTPTVGEACQKYGSIFENSQGLFISLKDKGRILEILKNWPHKKIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGVRP 278          
BLAST of CX295051 vs. ExPASy Swiss-Prot
Match: MAOX_MESCR (NADP-dependent malic enzyme OS=Mesembryanthemum crystallinum GN=MOD1 PE=2 SV=1)

HSP 1 Score: 342.813 bits (878), Expect = 1.106e-93
Identity = 159/200 (79.50%), Postives = 188/200 (94.00%), Query Frame = 3
Query:  129 VEGGVEDVYGEDRATEDQLVTPWTISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRP 728
            + GGV DVYGE+ AT+DQLVTPW+ SVA G+ LLRDP+HNKGLAFTEKERDAH+LRGLLPP V+SQ+LQEKK + ++RQY+VPLQKY+AMM+L+ERNE+LFYKLL+D+VEELLP+VYTPTVGE CQKYGSIFRRPQGL+ISLK+KG+ILE+L+NWPE+ IQVIVVTDGERILGLGDLGCQGMGIPVGKL+LY+ALGG+ P
Sbjct:   17 ITGGVADVYGEEFATQDQLVTPWSFSVACGHSLLRDPQHNKGLAFTEKERDAHFLRGLLPPVVLSQELQEKKFLTTLRQYQVPLQKYMAMMDLQERNEKLFYKLLVDHVEELLPLVYTPTVGEGCQKYGSIFRRPQGLFISLKDKGRILELLRNWPEKKIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYSALGGVCP 216          
BLAST of CX295051 vs. ExPASy Swiss-Prot
Match: MAOC_ORYSJ (NADP-dependent malic enzyme, chloroplastic OS=Oryza sativa subsp. japonica GN=ME6 PE=2 SV=2)

HSP 1 Score: 340.117 bits (871), Expect = 7.171e-93
Identity = 168/228 (73.68%), Postives = 195/228 (85.53%), Query Frame = 3
Query:   45 KVKRVRMESTMKEMRDGASVLDFDSKSTVEGGVEDVYGEDRATEDQLVTPWTISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRP 728
            +V+ V MES  +  +        +  +   GGVED+     ATE+  VTPW  SVASGY LLRDP HNKGLAF+EKERDAHYLRGLLPPAV+SQ LQ KK+M+++RQY VPLQ+Y+AMM+L+ERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFR+PQGLY+SLK+KGK+L+VL+NWPER+IQVIVVTDGERILGLGDLGCQGMGIPVGKL+LYTALGG+RP
Sbjct:   55 RVEAVAMESAAETEKK-------EEVAAAGGGVEDM-----ATEEVPVTPWAFSVASGYTLLRDPHHNKGLAFSEKERDAHYLRGLLPPAVVSQDLQVKKIMHNLRQYSVPLQRYMAMMDLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRQPQGLYVSLKDKGKVLDVLRNWPERNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRP 270          
BLAST of CX295051 vs. ExPASy Swiss-Prot
Match: MAOC_MAIZE (NADP-dependent malic enzyme, chloroplastic OS=Zea mays GN=MOD1 PE=1 SV=1)

HSP 1 Score: 315.079 bits (806), Expect = 2.470e-85
Identity = 150/187 (80.21%), Postives = 168/187 (89.84%), Query Frame = 3
Query:  168 ATEDQLVTPWTISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRP 728
            A+E+  V PW  SVASGY LLRDP HNKGLAFTE+ERD HYLRGLLPPAV+SQ+LQ KK MN++RQY+ PLQ+Y+AMM L+E +ERLFYKLLIDNV ELLP VYTPTVGEACQKYGSIF RPQGLY+SLK+KGK+LEVL+NWP R+IQVI VTDGERILGLGDLGCQGMGIPVGKLALYTALGG+ P
Sbjct:   81 ASEELPVMPWATSVASGYTLLRDPHHNKGLAFTEEERDGHYLRGLLPPAVLSQELQIKKFMNTLRQYQTPLQRYIAMMNLQETDERLFYKLLIDNVVELLPFVYTPTVGEACQKYGSIFGRPQGLYVSLKDKGKVLEVLRNWPHRNIQVICVTDGERILGLGDLGCQGMGIPVGKLALYTALGGVDP 267          
BLAST of CX295051 vs. ExPASy Swiss-Prot
Match: MAOX_ANAPL (NADP-dependent malic enzyme OS=Anas platyrhynchos GN=ME1 PE=1 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.119e-53
Identity = 96/171 (56.14%), Postives = 129/171 (75.44%), Query Frame = 3
Query:  216 GYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRP 728
            GY +LRDP  NKG+AFT +ER    + GLLPP  + Q +Q   ++ +  +    L +Y+ +M L++RNE+LFYK+L  ++E  +P+VYTPTVG ACQ+YG  FRRP+GL+I++ ++G I  +LK+WPE  I+ IVVTDGERILGLGDLGC GMGIPVGKLALYTA GG++P
Sbjct:    4 GYEVLRDPHLNKGMAFTLEERQQLNIHGLLPPCFLGQDVQVFSILKNFERLTSDLDRYILLMSLQDRNEKLFYKVLTSDIERFMPIVYTPTVGLACQQYGLAFRRPRGLFITIHDRGHIATMLKSWPESVIKAIVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVKP 174          
The following BLAST results are available for this feature:
BLAST of CX295051 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
MAOX_POPTR1.754e-11590.99NADP-dependent malic enzyme OS=Populus trichocarpa... [more]
MAOX_VITVI6.898e-11288.29NADP-dependent malic enzyme OS=Vitis vinifera PE=2... [more]
MAOC_FLAPR3.323e-9872.88NADP-dependent malic enzyme, chloroplastic OS=Flav... [more]
MAOX_PHAVU1.263e-9785.86NADP-dependent malic enzyme OS=Phaseolus vulgaris ... [more]
MAOC_SOLLC2.016e-9581.77NADP-dependent malic enzyme, chloroplastic (Fragme... [more]
MAOC_FLATR2.911e-9479.70NADP-dependent malic enzyme, chloroplastic OS=Flav... [more]
MAOX_MESCR1.106e-9379.50NADP-dependent malic enzyme OS=Mesembryanthemum cr... [more]
MAOC_ORYSJ7.171e-9373.68NADP-dependent malic enzyme, chloroplastic OS=Oryz... [more]
MAOC_MAIZE2.470e-8580.21NADP-dependent malic enzyme, chloroplastic OS=Zea ... [more]
MAOX_ANAPL1.119e-5356.14NADP-dependent malic enzyme OS=Anas platyrhynchos ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05068A10SK DroRLeaf1 Citrus clementina cDNA clone C05068A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295051 ID=CX295051; Name=CX295051; organism=Citrus clementina; type=EST; length=728bp
AGGGAGTGAGTGTTTGTTTGTTTTCGTTTTTGTGAAAAGCAGAAAAAGTA
AAAAGAGTGAGAATGGAGAGCACCATGAAGGAGATGAGAGACGGAGCTTC
GGTTCTCGACTTCGACTCGAAATCCACCGTCGAAGGCGGCGTTGAAGACG
TCTACGGTGAGGATCGTGCCACCGAGGACCAGCTCGTCACTCCCTGGACC
ATCTCTGTTGCCAGCGGGTACTGTTTGTTGAGGGATCCACGCCATAACAA
AGGGCTTGCTTTCACTGAGAAAGAGAGGGATGCCCACTACTTGCGCGGCC
TTTTGCCTCCAGCTGTTATAAGTCAACAACTTCAGGAGAAGAAATTGATG
AACAGCATCAGACAATATGAAGTTCCGCTGCAAAAATATGTGGCCATGAT
GGAACTTGAGGAGAGAAATGAAAGACTGTTCTATAAGCTACTGATTGATA
ATGTTGAGGAACTTCTCCCAGTCGTTTACACTCCAACTGTTGGTGAAGCT
TGCCAGAAATATGGAAGTATCTTCAGGCGTCCTCAGGGTCTATACATAAG
TCTGAAAGAGAAGGGAAAGATTCTTGAGGTTTTGAAGAACTGGCCTGAAA
GGAGTATTCAGGTTATTGTTGTCACAGATGGTGAGCGCATTTTGGGACTT
GGGGATCTTGGCTGTCAGGGGATGGGAATTCCTGTTGGGAAATTGGCTTT
GTACACAGCACTTGGAGGCATTCGTCCC
back to top