CX295067

Overview
NameCX295067
Unique NameCX295067
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295067 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.919e-49
Identity = 96/171 (56.14%), Postives = 118/171 (69.01%), Query Frame = 3
Query:    6 AFITALNSYPEFGRTDTN----REVAAFFAHVTHETTDFCYIEEKNKADPHC--TSPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMTYVHSALNQGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 500
            AF++A+N+YP F    T     RE+AAFFAHVTHET  FCYI E NK++ +C  ++ Q+PCA G+ YYGRGP+Q++ N NY  AGR IGF+GL  P  VA+D VI+FKTALWFWM  VH  + QGFG TIR ING  EC G N  Q+  RV  Y  YC++  VDPGP L C
Sbjct:  110 AFLSAVNAYPGFAHGGTEVEGKREIAAFFAHVTHETGHFCYISEINKSNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWMNNVHGVMPQGFGATIRAINGALECNGNNPAQMNARVGYYKQYCQQLRVDPGPNLIC 280          
BLAST of CX295067 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.584e-49
Identity = 98/177 (55.37%), Postives = 117/177 (66.10%), Query Frame = 3
Query:    3 DAFITALNSYPEFGRT----DTNREVAAFFAHVTHETTDFCYIEE-----KNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMTYVHSAL--NQGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 500
            DAF+TA   YP FGRT    D+ RE+AAFFAH  HET  FCYIEE     KN  D   TS Q+PC  GK YYGRGP+Q++ N NY  AG++IGFDGL  P+ VAR  V++F+TALW+W   VH A    QGFG TIR ING  EC G+N   V +RV  Y  +C++FGVDPG  L C
Sbjct:   97 DAFLTAAGGYPSFGRTGSVDDSKREIAAFFAHANHETIKFCYIEEIDGPSKNYCDE--TSTQWPCMAGKGYYGRGPLQISWNFNYGPAGQSIGFDGLGDPDAVARSPVLAFQTALWYWTNNVHDAFVSGQGFGATIRAINGALECDGKNPTAVSNRVAYYQQFCQQFGVDPGSNLTC 271          
BLAST of CX295067 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.293e-49
Identity = 96/174 (55.17%), Postives = 121/174 (69.54%), Query Frame = 3
Query:    6 AFITALNSYPEFGRT----DTNREVAAFFAHVTHETTDFCYIEEKNK--ADPHCT---SPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMTYVHSALNQGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 500
            AF++A++  P+FG      D  RE+AAFFAH++HETT+ C+IEE++    D +C    + QYPCA GK YYGRGP+QL+ N NY  AG+AIGFDGL +PE VA D   SFK A+WFWMT VHS +NQGFG T + ING  EC G+N+DQ  DR++ Y  YC  FGV PG  L C
Sbjct:  117 AFLSAVD--PKFGNEGSSDDNKREIAAFFAHISHETTNLCHIEERDGDVGDAYCDQDKAAQYPCAAGKKYYGRGPLQLSWNYNYALAGQAIGFDGLGNPEKVATDVNTSFKAAMWFWMTNVHSVMNQGFGATTKAINGALECNGQNQDQANDRIQFYKKYCADFGVAPGDNLTC 288          
BLAST of CX295067 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.625e-48
Identity = 93/171 (54.39%), Postives = 113/171 (66.08%), Query Frame = 3
Query:    6 AFITALNSYPEFG----RTDTNREVAAFFAHVTHETTDFCYIEEKNKADPHC--TSPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMTYVHSALNQGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 500
            AF++A+  YP F     +    RE+AAFFAH THET  FCYI E NK++ +C  T  Q+PCA G+ YYGRGP+Q++ N NY  AGRAIGFDGL  P  VARD V++FK ALWFWM  VH  + QGFG T R +    ECGG N  Q+  RV  Y  YC++ GVDPGP L C
Sbjct:   99 AFLSAVKGYPGFAHGGSQVQGKREIAAFFAHATHETGHFCYISEINKSNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNYGPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMNSVHGVVPQGFGATTRAMQRALECGGNNPAQMNARVGYYRQYCRQLGVDPGPNLTC 269          
BLAST of CX295067 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.728e-48
Identity = 97/172 (56.40%), Postives = 114/172 (66.28%), Query Frame = 3
Query:    6 AFITALNSYPEFGRTDTN----REVAAFFAHVTHETTDFCYIEEKNKAD-PHC--TSPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMTYVHSALNQGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 500
            +F+ A +SY  F R  TN    RE+AAFFAHVTHET   CYI E N A   +C   + Q+PC  GK YYGRGP+Q++ N NY  AG+ IGFDGL  P+ VA+D  ISFKTALWFWM  VH  + QGFG TIR ING  EC G+N   V  RV  Y DYC++FGVDPG  L C
Sbjct:  117 SFLNAAHSYSGFARDRTNDDSKREIAAFFAHVTHETGHMCYINEINGASMDYCDKNNKQWPCQPGKKYYGRGPLQISWNYNYGPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWMNNVHQVMLQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVDPGGNLYC 288          
BLAST of CX295067 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.728e-48
Identity = 97/174 (55.75%), Postives = 117/174 (67.24%), Query Frame = 3
Query:    3 DAFITALNSYPEFGRT----DTNREVAAFFAHVTHETTDFCYIEEKNKADP-HCTSP---QYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMTYVHSALNQGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 500
            DAF++ALNSY +FGR     D+ RE+AA FAH THET  FCYIEE + A   +C      QYPC++ K Y+GRGPIQL+ N NY  AG A  FDGL +PETV+ D V+SFKTALW+WM +V   +NQGFG TIR ING  EC G N   V  RV  YT+YC++ GV  G  L C
Sbjct:   97 DAFLSALNSYTDFGRVGSEDDSKREIAAAFAHFTHETGHFCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNYGPAGSANNFDGLGAPETVSNDVVVSFKTALWYWMQHVRPVINQGFGATIRAINGALECDGANPTTVQARVNYYTEYCRQLGVATGDNLTC 270          
BLAST of CX295067 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 1.796e-47
Identity = 95/172 (55.23%), Postives = 114/172 (66.28%), Query Frame = 3
Query:    6 AFITALNSYPEFGRTDTN----REVAAFFAHVTHETTDFCYIEEKNKAD-PHC--TSPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMTYVHSALNQGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 500
            +F+ A  SY  F    TN    RE+AAFFAHVTHET   CYI E N A+  +C  ++ Q+PC  GK YYGRGP+Q++ N NY  AG+ IGFDGL  P+ VA+D  ISFKTALWFWM  VH  ++QGFG TIR ING  EC G+N   V  RV  Y DYC++FGV PG  L C
Sbjct:  114 SFLNAARSYSGFANDRTNDDSKREIAAFFAHVTHETGHMCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNYGPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWMNNVHQVMSQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVSPGGNLYC 285          
BLAST of CX295067 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 3.746e-45
Identity = 93/174 (53.45%), Postives = 116/174 (66.67%), Query Frame = 3
Query:    9 FITALNSYPEFGRT----DTNREVAAFFAHVTHETTDFCYIEEKN-KADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFW----MTYVHSALNQGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 500
            F+ A+++YP FG      D  RE+AA+FAHVTHET   CYIEE++  A+ +C  S QYPC   K Y+GRGP+QL+ N NYIDAG+ + FDGLN P+ V RD +ISFKT+LWFW    + YV    NQGFG TIR ING  EC G N  Q++ RV  Y +YC + GV PG  L C
Sbjct:   77 FLEAVSAYPGFGTKCTDEDRKREIAAYFAHVTHETGHLCYIEERDGHANNYCQESQQYPCNPNKEYFGRGPMQLSWNYNYIDAGKELHFDGLNDPDIVGRDPIISFKTSLWFWIRKGVQYVILDPNQGFGATIRIINGGQECDGHNTAQMMARVGYYQEYCAQLGVSPGNNLPC 250          
BLAST of CX295067 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 1.423e-44
Identity = 89/169 (52.66%), Postives = 109/169 (64.50%), Query Frame = 3
Query:    3 DAFITALNSYPEFGRTDTNREVAAFFAHVTHETTDFCYIEEKNKAD-PHC--TSPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMTYVHSALNQGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 500
            D+FI A N++P F  + T RE+A  FAH THET  FCYIEE N A   +C   + QYPCA GK Y+GRGPIQL+ N NY   G+++  + L  PE V+ +  ++F+T LWFWM  V   LNQGFG TIR ING  EC G N   V  R+R Y DYC + GVDPGP L C
Sbjct:  101 DSFINAANTFPNFANSVTRREIATMFAHFTHETGHFCYIEEINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNYNYGACGQSLNLNLLGQPELVSSNPTVAFRTGLWFWMNSVRPVLNQGFGATIRAING-MECNGGNSGAVNARIRYYRDYCGQLGVDPGPNLSC 268          
BLAST of CX295067 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 7.081e-36
Identity = 92/206 (44.66%), Postives = 112/206 (54.37%), Query Frame = 3
Query:    3 DAFITALNSYPEFGRT---DT-NREVAAFFAHVTHETTD-------------FCYIEEKN-KADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT---------------YVHSALNQ------GFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 500
            DAF+ A N+YP+F  T   DT  REVAAF A  +HETT              +C+ EE N  A  +C   P++PCA GK YYGRGPIQ+T N NY  AG+AIG D LN+P+ VA D  +SFKTA WFWMT               +  SA +Q      G+GE    ING  ECG    D+V DR+  Y  YC   GV  G  L+C
Sbjct:  106 DAFVAAANAYPDFATTGDADTCKREVAAFLAQTSHETTGGWPTAPDGPYSWGYCFKEENNGNAPTYCEPKPEWPCAAGKKYYGRGPIQITYNYNYGPAGQAIGSDLLNNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVITGQWTPSADDQAAGRVPGYGEITNIINGGVECGHGADDKVADRIGFYKRYCDMLGVSYGDNLDC 311          
The following BLAST results are available for this feature:
BLAST of CX295067 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIA_MAIZE1.919e-4956.14Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHI6_ORYSJ5.584e-4955.37Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIP_BETVU7.293e-4955.17Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHIB_MAIZE1.625e-4854.39Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHI5_ORYSJ4.728e-4856.40Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_PHAVU4.728e-4855.75Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHI4_ORYSJ1.796e-4755.23Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_DIOJA3.746e-4553.45Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHI4_BRANA1.423e-4452.66Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHI3_ORYSJ7.081e-3644.66Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionC05068C02SK DroRLeaf1 Citrus clementina cDNA clone C05068C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295067 ID=CX295067; Name=CX295067; organism=Citrus clementina; type=EST; length=678bp
GAGATGCATTTATTACTGCTCTCAATTCGTATCCTGAATTTGGCAGAACT
GATACTAATCGTGAAGTGGCAGCATTTTTTGCCCATGTCACTCATGAAAC
AACAGATTTTTGCTACATAGAAGAGAAGAATAAAGCAGATCCTCATTGTA
CATCTCCACAATACCCATGTGCCAATGGTAAATTCTACTACGGCCGGGGA
CCGATTCAGCTCACCGGAAATGGAAACTACATAGACGCCGGAAGGGCCAT
CGGTTTCGACGGTCTGAACTCTCCGGAAACGGTAGCCAGGGACCGTGTCA
TATCTTTCAAGACCGCTTTGTGGTTTTGGATGACATACGTGCACTCAGCA
CTAAACCAAGGTTTTGGTGAAACAATTCGGAAAATTAATGGTCCTGCTGA
ATGCGGTGGCCGAAACCGTGACCAAGTTCTGGATCGTGTTAGGCGTTACA
CTGATTATTGCAAAAGATTTGGTGTTGATCCTGGACCACGTCTTGAATGC
TGAATAGATATTTTGTACAAAAAATATTACAGTATATGTATTATATTGTA
TCACAATAAGCCAGAGTTATTTCAAACAACTTTCTCTGTTTGGTAACTCT
GACGGAATAATTTTCTTGTACCTGATCATGAAATAAAGAGAAAAATAATG
GATAATTAAAAAAAAAAAAAAAAAAAAA
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