CX295073

Overview
NameCX295073
Unique NameCX295073
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295073 vs. ExPASy Swiss-Prot
Match: THOC1_MOUSE (THO complex subunit 1 OS=Mus musculus GN=Thoc1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.120e-15
Identity = 41/96 (42.71%), Postives = 57/96 (59.38%), Query Frame = 2
Query:  386 FQLLEDLTEMSTMKNCKDIFGYIESKQDILGKLELFARGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKY 673
            F LL D+ +   +  C  IF ++E           ++ GK  +LR CN LLRRLSK+ + VFCGRI +FLA  FPLSE+S +N++  FN  N T +
Sbjct:   94 FVLLGDVLDCLPLDQCDTIFTFVEKNVATWKSNTFYSAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQFNLENVTVF 189          
BLAST of CX295073 vs. ExPASy Swiss-Prot
Match: THOC1_HUMAN (THO complex subunit 1 OS=Homo sapiens GN=THOC1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.120e-15
Identity = 41/96 (42.71%), Postives = 57/96 (59.38%), Query Frame = 2
Query:  386 FQLLEDLTEMSTMKNCKDIFGYIESKQDILGKLELFARGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKY 673
            F LL D+ +   +  C  IF ++E           ++ GK  +LR CN LLRRLSK+ + VFCGRI +FLA  FPLSE+S +N++  FN  N T +
Sbjct:   94 FVLLGDVLDCLPLDQCDTIFTFVEKNVATWKSNTFYSAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQFNLENVTVF 189          
BLAST of CX295073 vs. ExPASy Swiss-Prot
Match: YJU3_SCHPO (Uncharacterized protein P25A2.03 OS=Schizosaccharomyces pombe GN=SPCP25A2.03 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.811e-12
Identity = 40/103 (38.83%), Postives = 62/103 (60.19%), Query Frame = 2
Query:  386 FQLLEDLTEMSTMKNCKDIFGYIESKQDIL-GKLELFARGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNE-TKYEKDPP 688
            F +LE+L ++ T+  C  ++ Y E++  ++ G +    RG  V+LR  N+LLRRLS+  +  FCGRI + L+  FP  ERS  N++G +NT +   K E  PP
Sbjct:  103 FLILEELMDIHTVNECAKLYEYFETRPSLMKGIVSNRGRGP-VLLRISNELLRRLSRQENSSFCGRIDILLSKAFPPEERSGANLRGDYNTVHSFGKVELSPP 204          
The following BLAST results are available for this feature:
BLAST of CX295073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
THOC1_MOUSE1.120e-1542.71THO complex subunit 1 OS=Mus musculus GN=Thoc1 PE=... [more]
THOC1_HUMAN1.120e-1542.71THO complex subunit 1 OS=Homo sapiens GN=THOC1 PE=... [more]
YJU3_SCHPO9.811e-1238.83Uncharacterized protein P25A2.03 OS=Schizosaccharo... [more]
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Properties
Property NameValue
Genbank descriptionC05068C08SK DroRLeaf1 Citrus clementina cDNA clone C05068C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295073 ID=CX295073; Name=CX295073; organism=Citrus clementina; type=EST; length=696bp
CAATTCATTCGCAGTTGTTTCTCTTCTTCCTCCACGCTGCGTTTAACATT
CTCCAGAATTTGGAGATTAATCTTGCAACATGGAAGTATTTAGAAGGGCA
ATCCTACAGGCCGGTCCCCCCGAGAATTTCGCTCTTCAGACCGTCCAAGA
GGTCATAAAGCCTCAGAAACAAACAAAGTTAGCGCAAGATGAGAATCAGT
TGTTGGAAAATATGCTTCGGACTTTGCTTCAGGAACTAGTGTCATCTGCA
GTGCAGTCGGGTGAGCCGATAATGCATTATGGCCAATCAATAGATGATGG
GGAAACTAGCCAAGCTCAAATTCCGCGTCTTCTAGACATTGTGCTATATC
TTTGTGAGAAAGAACATGTTGAGGGTGGTATGATATTTCAGCTCCTGGAA
GATTTGACAGAAATGTCTACAATGAAAAATTGCAAAGATATTTTTGGTTA
TATAGAAAGTAAACAAGACATTTTAGGAAAGTTAGAGCTGTTTGCTCGTG
GAAAACTTGTGATGTTGAGAACTTGCAATCAACTTCTTCGTCGTTTGTCA
AAGGCAAATGATGTAGTGTTTTGTGGACGAATCCTCATGTTTCTGGCTCA
CTTTTTTCCGCTGTCTGAGCGTTCAGCTGTGAACATAAAGGGAGTCTTTA
ATACGTCAAATGAGACCAAATATGAAAAAGACCCACCTGATGGCAT
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