CX295074

Overview
NameCX295074
Unique NameCX295074
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12785 contig Ccv1_Contig12785:44..754. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295074 vs. ExPASy Swiss-Prot
Match: PGTB2_HUMAN (Geranylgeranyl transferase type-2 subunit beta OS=Homo sapiens GN=RABGGTB PE=1 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 8.876e-40
Identity = 70/132 (53.03%), Postives = 100/132 (75.76%), Query Frame = 2
Query:  314 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKLDILDADKVSNYVAGLQNGDGSFSGDIWGEVDTRFSYIA 709
            L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  ++ E+++++I  CQ E GG + +IGHDPH+LYTLSAVQ+L L+D ++++D +KV  YV GLQ  DGSF+GDIWGE+DTRFS+ A
Sbjct:   18 LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGIYWGLTVMDLMGQLHRMNREEILAFIKSCQHECGGISASIGHDPHLLYTLSAVQILTLYDSINVIDVNKVVEYVKGLQKEDGSFAGDIWGEIDTRFSFCA 149          
BLAST of CX295074 vs. ExPASy Swiss-Prot
Match: PGTB2_DICDI (Probable geranylgeranyl transferase type-2 subunit beta OS=Dictyostelium discoideum GN=rabggtb PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.977e-39
Identity = 76/132 (57.58%), Postives = 95/132 (71.97%), Query Frame = 2
Query:  314 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKLDILDADKVSNYVAGLQNGDGSFSGDIWGEVDTRFSYIA 709
            L  DKHV+YI+ +  KKDSFE  V EH+R+NG YWGL++L +L  LD +D+ +VI W+L CQ  +GGF GN  HD H+L TLSAVQ+L  +D LD +D + V +YV  LQ  DGSF GD WGEVDTRFSY A
Sbjct:   22 LLIDKHVEYIVKLGSKKDSFEYWVTEHIRMNGMYWGLSSLYLLKSLDKLDKNEVIQWLLSCQKSNGGFGGNTSHDDHLLSTLSAVQILIQYDALDKIDINSVVDYVVKLQREDGSFVGDQWGEVDTRFSYAA 153          
BLAST of CX295074 vs. ExPASy Swiss-Prot
Match: PGTB2_BOVIN (Geranylgeranyl transferase type-2 subunit beta OS=Bos taurus GN=RABGGTB PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.754e-39
Identity = 69/132 (52.27%), Postives = 99/132 (75.00%), Query Frame = 2
Query:  314 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKLDILDADKVSNYVAGLQNGDGSFSGDIWGEVDTRFSYIA 709
            L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  ++ E+++++I  CQ E GG + +IGHDPH+LYTLSAVQ+L L+D ++++D +KV  YV  LQ  DGSF+GDIWGE+DTRFS+ A
Sbjct:   18 LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGIYWGLTVMDLMGQLHRMNREEILTFIKSCQHECGGISASIGHDPHLLYTLSAVQILTLYDSINVIDINKVVEYVQSLQKEDGSFAGDIWGEIDTRFSFCA 149          
BLAST of CX295074 vs. ExPASy Swiss-Prot
Match: PGTB2_RAT (Geranylgeranyl transferase type-2 subunit beta OS=Rattus norvegicus GN=Rabggtb PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.186e-38
Identity = 69/132 (52.27%), Postives = 98/132 (74.24%), Query Frame = 2
Query:  314 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKLDILDADKVSNYVAGLQNGDGSFSGDIWGEVDTRFSYIA 709
            L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  +++E+++ +I  CQ E GG + +IGHDPH+LYTLSAVQ+L L+D + +++ DKV  YV  LQ  DGSF+GDIWGE+DTRFS+ A
Sbjct:   18 LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCA 149          
BLAST of CX295074 vs. ExPASy Swiss-Prot
Match: PGTB2_MOUSE (Geranylgeranyl transferase type-2 subunit beta OS=Mus musculus GN=Rabggtb PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.855e-38
Identity = 69/132 (52.27%), Postives = 97/132 (73.48%), Query Frame = 2
Query:  314 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKLDILDADKVSNYVAGLQNGDGSFSGDIWGEVDTRFSYIA 709
            L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  ++ E+++ +I  CQ E GG + +IGHDPH+LYTLSAVQ+L L+D + +++ DKV  YV  LQ  DGSF+GDIWGE+DTRFS+ A
Sbjct:   26 LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNREEILVFIKSCQHECGGISASIGHDPHLLYTLSAVQILTLYDSVHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCA 157          
BLAST of CX295074 vs. ExPASy Swiss-Prot
Match: PGTB2_SCHPO (Geranylgeranyl transferase type-2 subunit beta OS=Schizosaccharomyces pombe GN=ptb1 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.678e-30
Identity = 60/133 (45.11%), Postives = 85/133 (63.91%), Query Frame = 2
Query:  305 MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKLDILDADKVSNYVAGLQNGDGSFSGDIWGEVDTRFSY 703
            M  L  DKH+ Y+  +  + D  +  + EHL ++  YW   +  +L K D +D+E ++S++L C  ESGGFA   GHD H+  T+ AVQVLA+ D L ++D DKV++Y+ GLQN DGS  GD WGE+D RF Y
Sbjct:    1 MAVLLRDKHISYLHDIGNRTDELDFWLKEHLHVSAIYWSCMSFWLLKKKDQIDKERIVSFLLSCLTESGGFACYPGHDDHITNTVYAVQVLAMLDSLHVVDKDKVASYIIGLQNEDGSMKGDRWGEIDARFLY 133          
BLAST of CX295074 vs. ExPASy Swiss-Prot
Match: GGTB2_CAEEL (Probable geranylgeranyl transferase type-2 subunit beta OS=Caenorhabditis elegans GN=ggtb-1 PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.855e-29
Identity = 57/130 (43.85%), Postives = 88/130 (67.69%), Query Frame = 2
Query:  311 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKLDILDADKVSNYVAGLQNGDGSFSGDIWGEVDTRFS 700
            EL  D H  +I   EK K+S+  ++ EHLR++G YW +  +D+  +L+ +  E++++++L C++  GG+    GHD H+L+TL AVQ L +F+ ++  DAD +S YV GLQ  DGSF GD+ GEVDTRF+
Sbjct:   23 ELLKDLHANFINQYEKNKNSYHYIMAEHLRVSGIYWCVNAMDLSKQLERMSTEEIVNYVLGCRNTDGGYGPAPGHDSHLLHTLCAVQTLIIFNSIEKADADTISEYVKGLQQEDGSFCGDLSGEVDTRFT 152          
BLAST of CX295074 vs. ExPASy Swiss-Prot
Match: PGTB2_YEAST (Geranylgeranyl transferase type-2 subunit beta OS=Saccharomyces cerevisiae GN=BET2 PE=1 SV=3)

HSP 1 Score: 129.028 bits (323), Expect = 2.423e-29
Identity = 68/136 (50.00%), Postives = 92/136 (67.65%), Query Frame = 2
Query:  314 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDES-GGFAGNIGHDPHVLYTLSAVQVLALFDKLDILDAD---KVSNYVAGLQNGDGSFSGDIWGEVDTRFSYIA 709
            L  +KH++YI S++ KK +FE  + EHLRLNG YWGLT L +L   +   +E+VIS++L C D+  G FA    HD H+L TLSAVQ+LA +D LD+L  D   ++ +++ G Q  DGSF GD +GEVDTRF Y A
Sbjct:    7 LLKEKHIRYIESLDTKKHNFEYWLTEHLRLNGIYWGLTALCVLDSPETFVKEEVISFVLSCWDDKYGAFAPFPRHDAHLLTTLSAVQILATYDALDVLGKDRKVRLISFIRGNQLEDGSFQGDRFGEVDTRFVYTA 142          
BLAST of CX295074 vs. ExPASy Swiss-Prot
Match: PGTB2_CANAL (Geranylgeranyl transferase type-2 subunit beta OS=Candida albicans GN=BET2 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.053e-24
Identity = 62/140 (44.29%), Postives = 90/140 (64.29%), Query Frame = 2
Query:  326 KHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKC-QDESGGFAGNIGHDPHVLYTLSAVQVLALFD-KLDILD----------ADKVSNYVAGLQNGDGSFSGDIWGEVDTRFSYIA 709
            KHV+YI+  E  + SFE  + EHLR+NG YWG+T L  + +L A+ ++DVI +I+ C  D++G F     HD H+L TLSA+QVL ++D +L +L+           +++  ++ GLQ  DGSF GD +GEVDTRF Y A
Sbjct:   17 KHVQYIVEQESHR-SFEYWLSEHLRMNGLYWGVTALITMNELSALAQQDVIDYIMLCWDDKTGAFGSFPKHDGHILSTLSALQVLKIYDQELTVLNDNNESSNGNKRERLIKFITGLQLPDGSFQGDKYGEVDTRFVYTA 155          
BLAST of CX295074 vs. ExPASy Swiss-Prot
Match: FNTB_SCHPO (Protein farnesyltransferase subunit beta OS=Schizosaccharomyces pombe GN=cpp1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.208e-12
Identity = 48/133 (36.09%), Postives = 73/133 (54.89%), Query Frame = 2
Query:  326 KHVKYIISVEKKKDSFES--VVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKLD---ILDADKVSNYVAGLQNGDGSFSGDIWGEVDTRFSYIA 709
            KH+KY+    K  D   S   V++  R    YW L++L ILGKLD+   E  IS + + +  SGGF G  G D H+L T +++  + L D  D   +++ D++ +++  L+N DGSF  +  GE D R  Y A
Sbjct:   33 KHLKYLT---KMLDPLPSPFTVLDASRAWMVYWELSSLAILGKLDSSVCERAISSVRQLKGPSGGFCGGNGQDEHLLSTYASILSICLCDSTDAYSLIERDRLYDWLFSLKNPDGSFRVNNEGESDARSVYAA 162          
The following BLAST results are available for this feature:
BLAST of CX295074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
PGTB2_HUMAN8.876e-4053.03Geranylgeranyl transferase type-2 subunit beta OS=... [more]
PGTB2_DICDI1.977e-3957.58Probable geranylgeranyl transferase type-2 subunit... [more]
PGTB2_BOVIN5.754e-3952.27Geranylgeranyl transferase type-2 subunit beta OS=... [more]
PGTB2_RAT2.186e-3852.27Geranylgeranyl transferase type-2 subunit beta OS=... [more]
PGTB2_MOUSE2.855e-3852.27Geranylgeranyl transferase type-2 subunit beta OS=... [more]
PGTB2_SCHPO1.678e-3045.11Geranylgeranyl transferase type-2 subunit beta OS=... [more]
GGTB2_CAEEL1.855e-2943.85Probable geranylgeranyl transferase type-2 subunit... [more]
PGTB2_YEAST2.423e-2950.00Geranylgeranyl transferase type-2 subunit beta OS=... [more]
PGTB2_CANAL1.053e-2444.29Geranylgeranyl transferase type-2 subunit beta OS=... [more]
FNTB_SCHPO1.208e-1236.09Protein farnesyltransferase subunit beta OS=Schizo... [more]
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Properties
Property NameValue
Genbank descriptionC05068C09SK DroRLeaf1 Citrus clementina cDNA clone C05068C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295074 ID=CX295074; Name=CX295074; organism=Citrus clementina; type=EST; length=711bp
CTGCCAGCCCCCGTCTCTCACGCTCACTCGCACTCTCTCCTTCTCCGGTC
ACCATCTTACTCTCACGGTCTCTCAACGTCTCATTCTCTCAGCCTGACTG
CCGTCAGCCCCACCTCCCCCAGTTTCCTCAAGAACTCGACTTCCGCTAGC
CCCAACCGTCGCTGGCTGCGTCTCCTCCTCAGGCGCATTCCAACGTCAGT
AAAGCTGAGGCCTTCCCTCAAATTTTGGCTGAAGTGGCTAAAGAAAGTTC
TCATTTGCTGTTGTGAAGCCGCTGCCGCTGACATCACTGCTGCTGCATTT
GGAGATGGGAGAGCTGGCTGCAGATAAACATGTGAAATACATTATTTCAG
TTGAGAAGAAAAAGGATAGTTTTGAATCTGTGGTGATGGAACATTTGAGA
TTGAATGGGGCATATTGGGGGCTGACGACCCTCGATATTTTAGGAAAGCT
TGATGCTGTAGATGAAGAAGATGTTATTTCATGGATCTTGAAGTGTCAGG
ATGAATCTGGTGGTTTTGCTGGTAATATTGGACATGATCCACATGTGTTG
TATACCCTCAGCGCCGTGCAAGTTTTGGCCCTTTTTGATAAGTTAGATAT
TCTTGATGCCGATAAGGTGTCAAATTATGTTGCGGGGCTGCAAAATGGAG
ATGGCTCCTTTTCTGGAGACATATGGGGGGAAGTGGATACACGGTTTTCT
TATATCGCTAT
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