CX295081

Overview
NameCX295081
Unique NameCX295081
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295081 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.199e-49
Identity = 95/170 (55.88%), Postives = 117/170 (68.82%), Query Frame = 1
Query:    1 FITALNSYPDFGRTDTN----REVAAFFAHVTHETTDFCYIEEKNKADPHC--TSPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMTYVHSALNQGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            F++A+N+YP F    T     RE+AAFFAHVTHET  FCYI E NK++ +C  ++ Q+PCA G+ YYGRGP+Q++ N NY  AGR IGF+GL  P  VA+D VI+FKTALWFWM  VH  + QGFG TIR ING  EC G N  Q+  RV  Y  YC++  VDPGP L C
Sbjct:  111 FLSAVNAYPGFAHGGTEVEGKREIAAFFAHVTHETGHFCYISEINKSNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWMNNVHGVMPQGFGATIRAINGALECNGNNPAQMNARVGYYKQYCQQLRVDPGPNLIC 280          
BLAST of CX295081 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.555e-48
Identity = 95/173 (54.91%), Postives = 119/173 (68.79%), Query Frame = 1
Query:    1 FITALNSYPDFGRT----DTNREVAAFFAHVTHETTDFCYIEEKNK--ADPHCT---SPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMTYVHSALNQGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            F++A++  P FG      D  RE+AAFFAH++HETT+ C+IEE++    D +C    + QYPCA GK YYGRGP+QL+ N NY  AG+AIGFDGL +PE VA D   SFK A+WFWMT VHS +NQGFG T + ING  EC G+N+DQ  DR++ Y  YC  FGV PG  L C
Sbjct:  118 FLSAVD--PKFGNEGSSDDNKREIAAFFAHISHETTNLCHIEERDGDVGDAYCDQDKAAQYPCAAGKKYYGRGPLQLSWNYNYALAGQAIGFDGLGNPEKVATDVNTSFKAAMWFWMTNVHSVMNQGFGATTKAINGALECNGQNQDQANDRIQFYKKYCADFGVAPGDNLTC 288          
BLAST of CX295081 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.555e-48
Identity = 92/170 (54.12%), Postives = 112/170 (65.88%), Query Frame = 1
Query:    1 FITALNSYPDFG----RTDTNREVAAFFAHVTHETTDFCYIEEKNKADPHC--TSPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMTYVHSALNQGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            F++A+  YP F     +    RE+AAFFAH THET  FCYI E NK++ +C  T  Q+PCA G+ YYGRGP+Q++ N NY  AGRAIGFDGL  P  VARD V++FK ALWFWM  VH  + QGFG T R +    ECGG N  Q+  RV  Y  YC++ GVDPGP L C
Sbjct:  100 FLSAVKGYPGFAHGGSQVQGKREIAAFFAHATHETGHFCYISEINKSNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNYGPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMNSVHGVVPQGFGATTRAMQRALECGGNNPAQMNARVGYYRQYCRQLGVDPGPNLTC 269          
BLAST of CX295081 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.643e-48
Identity = 97/171 (56.73%), Postives = 113/171 (66.08%), Query Frame = 1
Query:    1 FITALNSYPDFGRTDTN----REVAAFFAHVTHETTDFCYIEEKNKAD-PHC--TSPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMTYVHSALNQGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            F+ A +SY  F R  TN    RE+AAFFAHVTHET   CYI E N A   +C   + Q+PC  GK YYGRGP+Q++ N NY  AG+ IGFDGL  P+ VA+D  ISFKTALWFWM  VH  + QGFG TIR ING  EC G+N   V  RV  Y DYC++FGVDPG  L C
Sbjct:  118 FLNAAHSYSGFARDRTNDDSKREIAAFFAHVTHETGHMCYINEINGASMDYCDKNNKQWPCQPGKKYYGRGPLQISWNYNYGPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWMNNVHQVMLQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVDPGGNLYC 288          
BLAST of CX295081 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 7.920e-48
Identity = 96/175 (54.86%), Postives = 115/175 (65.71%), Query Frame = 1
Query:    1 FITALNSYPDFGRT----DTNREVAAFFAHVTHETTDFCYIEE-----KNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMTYVHSAL--NQGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            F+TA   YP FGRT    D+ RE+AAFFAH  HET  FCYIEE     KN  D   TS Q+PC  GK YYGRGP+Q++ N NY  AG++IGFDGL  P+ VAR  V++F+TALW+W   VH A    QGFG TIR ING  EC G+N   V +RV  Y  +C++FGVDPG  L C
Sbjct:   99 FLTAAGGYPSFGRTGSVDDSKREIAAFFAHANHETIKFCYIEEIDGPSKNYCDE--TSTQWPCMAGKGYYGRGPLQISWNFNYGPAGQSIGFDGLGDPDAVARSPVLAFQTALWYWTNNVHDAFVSGQGFGATIRAINGALECDGKNPTAVSNRVAYYQQFCQQFGVDPGSNLTC 271          
BLAST of CX295081 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 1.764e-47
Identity = 95/171 (55.56%), Postives = 113/171 (66.08%), Query Frame = 1
Query:    1 FITALNSYPDFGRTDTN----REVAAFFAHVTHETTDFCYIEEKNKAD-PHC--TSPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMTYVHSALNQGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            F+ A  SY  F    TN    RE+AAFFAHVTHET   CYI E N A+  +C  ++ Q+PC  GK YYGRGP+Q++ N NY  AG+ IGFDGL  P+ VA+D  ISFKTALWFWM  VH  ++QGFG TIR ING  EC G+N   V  RV  Y DYC++FGV PG  L C
Sbjct:  115 FLNAARSYSGFANDRTNDDSKREIAAFFAHVTHETGHMCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNYGPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWMNNVHQVMSQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVSPGGNLYC 285          
BLAST of CX295081 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.304e-47
Identity = 96/172 (55.81%), Postives = 115/172 (66.86%), Query Frame = 1
Query:    1 FITALNSYPDFGRT----DTNREVAAFFAHVTHETTDFCYIEEKNKADP-HCTSP---QYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMTYVHSALNQGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            F++ALNSY DFGR     D+ RE+AA FAH THET  FCYIEE + A   +C      QYPC++ K Y+GRGPIQL+ N NY  AG A  FDGL +PETV+ D V+SFKTALW+WM +V   +NQGFG TIR ING  EC G N   V  RV  YT+YC++ GV  G  L C
Sbjct:   99 FLSALNSYTDFGRVGSEDDSKREIAAAFAHFTHETGHFCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNYGPAGSANNFDGLGAPETVSNDVVVSFKTALWYWMQHVRPVINQGFGATIRAINGALECDGANPTTVQARVNYYTEYCRQLGVATGDNLTC 270          
BLAST of CX295081 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 2.817e-45
Identity = 93/174 (53.45%), Postives = 116/174 (66.67%), Query Frame = 1
Query:    1 FITALNSYPDFGRT----DTNREVAAFFAHVTHETTDFCYIEEKN-KADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFW----MTYVHSALNQGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            F+ A+++YP FG      D  RE+AA+FAHVTHET   CYIEE++  A+ +C  S QYPC   K Y+GRGP+QL+ N NYIDAG+ + FDGLN P+ V RD +ISFKT+LWFW    + YV    NQGFG TIR ING  EC G N  Q++ RV  Y +YC + GV PG  L C
Sbjct:   77 FLEAVSAYPGFGTKCTDEDRKREIAAYFAHVTHETGHLCYIEERDGHANNYCQESQQYPCNPNKEYFGRGPMQLSWNYNYIDAGKELHFDGLNDPDIVGRDPIISFKTSLWFWIRKGVQYVILDPNQGFGATIRIINGGQECDGHNTAQMMARVGYYQEYCAQLGVSPGNNLPC 250          
BLAST of CX295081 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 6.938e-44
Identity = 88/167 (52.69%), Postives = 108/167 (64.67%), Query Frame = 1
Query:    1 FITALNSYPDFGRTDTNREVAAFFAHVTHETTDFCYIEEKNKAD-PHC--TSPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMTYVHSALNQGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            FI A N++P+F  + T RE+A  FAH THET  FCYIEE N A   +C   + QYPCA GK Y+GRGPIQL+ N NY   G+++  + L  PE V+ +  ++F+T LWFWM  V   LNQGFG TIR ING  EC G N   V  R+R Y DYC + GVDPGP L C
Sbjct:  103 FINAANTFPNFANSVTRREIATMFAHFTHETGHFCYIEEINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNYNYGACGQSLNLNLLGQPELVSSNPTVAFRTGLWFWMNSVRPVLNQGFGATIRAING-MECNGGNSGAVNARIRYYRDYCGQLGVDPGPNLSC 268          
BLAST of CX295081 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 3.451e-35
Identity = 91/204 (44.61%), Postives = 110/204 (53.92%), Query Frame = 1
Query:    1 FITALNSYPDFGRT---DT-NREVAAFFAHVTHETTD-------------FCYIEEKN-KADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT---------------YVHSALNQ------GFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            F+ A N+YPDF  T   DT  REVAAF A  +HETT              +C+ EE N  A  +C   P++PCA GK YYGRGPIQ+T N NY  AG+AIG D LN+P+ VA D  +SFKTA WFWMT               +  SA +Q      G+GE    ING  ECG    D+V DR+  Y  YC   GV  G  L+C
Sbjct:  108 FVAAANAYPDFATTGDADTCKREVAAFLAQTSHETTGGWPTAPDGPYSWGYCFKEENNGNAPTYCEPKPEWPCAAGKKYYGRGPIQITYNYNYGPAGQAIGSDLLNNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVITGQWTPSADDQAAGRVPGYGEITNIINGGVECGHGADDKVADRIGFYKRYCDMLGVSYGDNLDC 311          
The following BLAST results are available for this feature:
BLAST of CX295081 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIA_MAIZE4.199e-4955.88Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHIP_BETVU3.555e-4854.91Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHIB_MAIZE3.555e-4854.12Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHI5_ORYSJ4.643e-4856.73Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI6_ORYSJ7.920e-4854.86Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_ORYSJ1.764e-4755.56Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_PHAVU2.304e-4755.81Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHIT_DIOJA2.817e-4553.45Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHI4_BRANA6.938e-4452.69Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHI3_ORYSJ3.451e-3544.61Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05068D04SK DroRLeaf1 Citrus clementina cDNA clone C05068D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295081 ID=CX295081; Name=CX295081; organism=Citrus clementina; type=EST; length=670bp
TTTATTACTGCTCTCAATTCGTATCCTGACTTTGGCAGAACTGATACTAA
TCGTGAAGTGGCAGCATTTTTTGCCCATGTCACTCATGAAACAACAGATT
TTTGCTACATAGAAGAGAAGAATAAAGCAGATCCTCATTGTACATCTCCA
CAATACCCATGTGCCAATGGTAAATTCTACTACGGCCGGGGACCGATTCA
GCTCACCGGAAATGGAAACTACATAGACGCCGGAAGGGCCATCGGTTTCG
ACGGTCTGAACTCTCCGGAAACGGTAGCCAGGGACCGTGTCATATCTTTC
AAGACCGCTTTGTGGTTTTGGATGACATACGTGCACTCAGCACTAAACCA
AGGTTTTGGTGAAACAATTCGGAAAATTAATGGTCCTGCTGAATGCGGTG
GCCGAAACCGTGACCAAGTTCTGGATCGTGTTAGGCGTTACACTGATTAT
TGCAAAAGATTTGGTGTTGATCCTGGACCACGTCTTGAATGCTGAATAGA
TATTTTGTACAAAAAATATTACAGTATATGTATTATATTGTATCACAATA
AGCCAGAGTTATTTCAAACAACTTTCTCTGTTTGGTAACTCTGACGGAAT
AATTTTCTTGTACCTGATCATGAAATAAAGAGAAAAATAATGGATAATTA
AAAAAAAAAAAAAAAAAAAA
back to top