CX295082

Overview
NameCX295082
Unique NameCX295082
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295082 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.126e-66
Identity = 112/147 (76.19%), Postives = 134/147 (91.16%), Query Frame = 1
Query:    1 IAHHVALRAAEAEVEILGNILLHPMFGGEKRTESETRLDGKYFVTIQDRNWYWRAFLPEGEDRDHPACNPFGPRGKSLEGLKFPKSLICVAGLDLIQDWQLAYVEGLRKAGQDVKLLFLKEATIGFYFLPNNDHFYCLMEEIKNFVN 441
            IAH+VA+RA    V++LGNILLHPMFGG++RT+SE  LDGKYFVTIQDR+WYWRA+LPEGEDRDHPACNPFGPRG+SL+G+ FPKSL+ VAGLDL+QDWQLAYV+GL+K G +V LL+LK+ATIGFYFLPNNDHF+CLMEE+  FV+
Sbjct:  196 IAHNVAVRATNEGVKVLGNILLHPMFGGQERTQSEKTLDGKYFVTIQDRDWYWRAYLPEGEDRDHPACNPFGPRGQSLKGVNFPKSLVVVAGLDLVQDWQLAYVDGLKKTGLEVNLLYLKQATIGFYFLPNNDHFHCLMEELNKFVH 342          
BLAST of CX295082 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.626e-65
Identity = 111/150 (74.00%), Postives = 134/150 (89.33%), Query Frame = 1
Query:    1 IAHHVALRAAEAEVEILGNILLHPMFGGEKRTESETRLDGKYFVTIQDRNWYWRAFLPEGEDRDHPACNPFGPRGKSLEGLKFPKSLICVAGLDLIQDWQLAYVEGLRKAGQDVKLLFLKEATIGFYFLPNNDHFYCLMEEIKNFVNPSC 450
            I H+VA+RA E+ +++LGNILL+PMFGG +RTESE RLDGKYFVT++DR+WYWRAFLPEGEDR+HPAC+PFGPR KSLEGL FPKSL+ VAGLDLIQDWQL Y EGL+KAGQ+VKLL+L++ATIGFY LPNN+HF+ +M+EI  FVN  C
Sbjct:  194 IVHNVAVRAVESRIDVLGNILLNPMFGGTERTESEKRLDGKYFVTVRDRDWYWRAFLPEGEDREHPACSPFGPRSKSLEGLSFPKSLVVVAGLDLIQDWQLKYAEGLKKAGQEVKLLYLEQATIGFYLLPNNNHFHTVMDEIAAFVNAEC 343          
BLAST of CX295082 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.797e-64
Identity = 109/150 (72.67%), Postives = 134/150 (89.33%), Query Frame = 1
Query:    1 IAHHVALRAAEAEVEILGNILLHPMFGGEKRTESETRLDGKYFVTIQDRNWYWRAFLPEGEDRDHPACNPFGPRGKSLEGLKFPKSLICVAGLDLIQDWQLAYVEGLRKAGQDVKLLFLKEATIGFYFLPNNDHFYCLMEEIKNFVNPSC 450
            IAH+VALRA E+ +++LGNILL+PMFGG +RTESE  LDGKYFVT++DR+WYW+AFLPEGEDR+HPACNPF PRGKSLEG+ FPKSL+ VAGLDLI+DWQLAY EGL+KAGQ+VKL+ L++AT+GFY LPNN+HF+ +M+EI  FVN  C
Sbjct:  196 IAHNVALRAGESGIDVLGNILLNPMFGGNERTESEKSLDGKYFVTVRDRDWYWKAFLPEGEDREHPACNPFSPRGKSLEGVSFPKSLVVVAGLDLIRDWQLAYAEGLKKAGQEVKLMHLEKATVGFYLLPNNNHFHNVMDEISAFVNAEC 345          
BLAST of CX295082 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.745e-51
Identity = 95/152 (62.50%), Postives = 119/152 (78.29%), Query Frame = 1
Query:    1 IAHHVALRAAEAEVEILGNILLHPMFGGEKRTESETRLDGKYFVTIQDRNWYWRAFLPEGEDRDHPACNPFGPRGKSLEGLKFPKSLICVAGLDLIQDWQLAYVEGLRKAGQDVKLLFLKEATIGFYFLPNNDHFYCLMEEIKNFVNPSC*Y 456
            IAHHVA+RAA+  V++ GNILL+ MFGG +RTESE RLDGKYFVT+QDR+WYW+A+LPE  DRDHPACNPFGP G+ L GL F KSLI V+GLDL  D QLAY + LR+ G  VK++  + AT+GFY LPN  H++ +MEEI +F+N +  Y
Sbjct:  203 IAHHVAVRAADEGVKVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYWKAYLPEDADRDHPACNPFGPNGRRLGGLPFAKSLIIVSGLDLTCDRQLAYADALREDGHHVKVVQCENATVGFYLLPNTVHYHEVMEEISDFLNANLYY 354          
The following BLAST results are available for this feature:
BLAST of CX295082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GI1L2_ARATH1.126e-6676.19Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GI1L3_ARATH1.626e-6574.00Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GI1L1_ARATH1.797e-6472.67Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
GID1_ORYSJ1.745e-5162.50Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
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Properties
Property NameValue
Genbank descriptionC05068D05SK DroRLeaf1 Citrus clementina cDNA clone C05068D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295082 ID=CX295082; Name=CX295082; organism=Citrus clementina; type=EST; length=718bp
ATAGCACACCATGTTGCTCTGAGGGCAGCTGAAGCAGAGGTTGAAATATT
GGGTAATATTCTCCTTCATCCAATGTTCGGTGGAGAAAAGAGAACTGAAT
CAGAGACAAGATTGGATGGGAAATACTTTGTAACTATACAGGACCGCAAC
TGGTATTGGAGAGCATTTCTCCCCGAAGGAGAAGATAGAGATCATCCAGC
ATGTAATCCATTTGGTCCGAGGGGCAAAAGTCTTGAAGGTCTCAAATTCC
CTAAAAGCCTCATTTGTGTAGCTGGTTTGGATCTTATTCAAGACTGGCAA
TTGGCTTATGTTGAAGGGCTGAGGAAAGCTGGTCAAGATGTGAAACTCCT
TTTCCTGAAGGAAGCCACGATTGGGTTCTACTTCTTGCCGAATAATGACC
ACTTCTACTGCCTCATGGAGGAGATAAAGAACTTCGTGAATCCTAGCTGT
TAATATCTACTTAACCTTAACTACAGGCAACCTTACATAACAGAAGTTTG
ACATTTCAGTTGTTTTTTTTTTTTTCAACTCTTTCGAAGTGATGGTGTGT
AGTTATAAGTTTGTGTAGTATTACTTCTTTACTGTGTTACCATTTATGGT
GGTGGTAATACAAGCTCTGCTTCTTTGGGTACTGGCTGTTCATCTGCAGA
ATGGAGATCTGATGGCCTATGCCATTTACTTGTGCAGAGGTAATCTATCG
GAGACTTTTAGTTGTTCA
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