CX295084

Overview
NameCX295084
Unique NameCX295084
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length622
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 2.789e-49
Identity = 95/170 (55.88%), Postives = 117/170 (68.82%), Query Frame = 1
Query:    1 FITALNSYPAFGRTDTN----REVAAFFAHVTHETTDFCYIEEKNKADPHC--TSPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMTYVHSALNQGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            F++A+N+YP F    T     RE+AAFFAHVTHET  FCYI E NK++ +C  ++ Q+PCA G+ YYGRGP+Q++ N NY  AGR IGF+GL  P  VA+D VI+FKTALWFWM  VH  + QGFG TIR ING  EC G N  Q+  RV  Y  YC++  VDPGP L C
Sbjct:  111 FLSAVNAYPGFAHGGTEVEGKREIAAFFAHVTHETGHFCYISEINKSNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWMNNVHGVMPQGFGATIRAINGALECNGNNPAQMNARVGYYKQYCQQLRVDPGPNLIC 280          
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.361e-48
Identity = 92/170 (54.12%), Postives = 112/170 (65.88%), Query Frame = 1
Query:    1 FITALNSYPAFG----RTDTNREVAAFFAHVTHETTDFCYIEEKNKADPHC--TSPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMTYVHSALNQGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            F++A+  YP F     +    RE+AAFFAH THET  FCYI E NK++ +C  T  Q+PCA G+ YYGRGP+Q++ N NY  AGRAIGFDGL  P  VARD V++FK ALWFWM  VH  + QGFG T R +    ECGG N  Q+  RV  Y  YC++ GVDPGP L C
Sbjct:  100 FLSAVKGYPGFAHGGSQVQGKREIAAFFAHATHETGHFCYISEINKSNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNYGPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMNSVHGVVPQGFGATTRAMQRALECGGNNPAQMNARVGYYRQYCRQLGVDPGPNLTC 269          
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.083e-48
Identity = 95/173 (54.91%), Postives = 119/173 (68.79%), Query Frame = 1
Query:    1 FITALNSYPAFGRT----DTNREVAAFFAHVTHETTDFCYIEEKNK--ADPHCT---SPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMTYVHSALNQGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            F++A++  P FG      D  RE+AAFFAH++HETT+ C+IEE++    D +C    + QYPCA GK YYGRGP+QL+ N NY  AG+AIGFDGL +PE VA D   SFK A+WFWMT VHS +NQGFG T + ING  EC G+N+DQ  DR++ Y  YC  FGV PG  L C
Sbjct:  118 FLSAVD--PKFGNEGSSDDNKREIAAFFAHISHETTNLCHIEERDGDVGDAYCDQDKAAQYPCAAGKKYYGRGPLQLSWNYNYALAGQAIGFDGLGNPEKVATDVNTSFKAAMWFWMTNVHSVMNQGFGATTKAINGALECNGQNQDQANDRIQFYKKYCADFGVAPGDNLTC 288          
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.083e-48
Identity = 97/171 (56.73%), Postives = 113/171 (66.08%), Query Frame = 1
Query:    1 FITALNSYPAFGRTDTN----REVAAFFAHVTHETTDFCYIEEKNKAD-PHC--TSPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMTYVHSALNQGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            F+ A +SY  F R  TN    RE+AAFFAHVTHET   CYI E N A   +C   + Q+PC  GK YYGRGP+Q++ N NY  AG+ IGFDGL  P+ VA+D  ISFKTALWFWM  VH  + QGFG TIR ING  EC G+N   V  RV  Y DYC++FGVDPG  L C
Sbjct:  118 FLNAAHSYSGFARDRTNDDSKREIAAFFAHVTHETGHMCYINEINGASMDYCDKNNKQWPCQPGKKYYGRGPLQISWNYNYGPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWMNNVHQVMLQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVDPGGNLYC 288          
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 5.259e-48
Identity = 96/175 (54.86%), Postives = 116/175 (66.29%), Query Frame = 1
Query:    1 FITALNSYPAFGRT----DTNREVAAFFAHVTHETTDFCYIEE-----KNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMTYVHSAL--NQGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            F+TA   YP+FGRT    D+ RE+AAFFAH  HET  FCYIEE     KN  D   TS Q+PC  GK YYGRGP+Q++ N NY  AG++IGFDGL  P+ VAR  V++F+TALW+W   VH A    QGFG TIR ING  EC G+N   V +RV  Y  +C++FGVDPG  L C
Sbjct:   99 FLTAAGGYPSFGRTGSVDDSKREIAAFFAHANHETIKFCYIEEIDGPSKNYCDE--TSTQWPCMAGKGYYGRGPLQISWNFNYGPAGQSIGFDGLGDPDAVARSPVLAFQTALWYWTNNVHDAFVSGQGFGATIRAINGALECDGKNPTAVSNRVAYYQQFCQQFGVDPGSNLTC 271          
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 1.172e-47
Identity = 95/171 (55.56%), Postives = 113/171 (66.08%), Query Frame = 1
Query:    1 FITALNSYPAFGRTDTN----REVAAFFAHVTHETTDFCYIEEKNKAD-PHC--TSPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMTYVHSALNQGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            F+ A  SY  F    TN    RE+AAFFAHVTHET   CYI E N A+  +C  ++ Q+PC  GK YYGRGP+Q++ N NY  AG+ IGFDGL  P+ VA+D  ISFKTALWFWM  VH  ++QGFG TIR ING  EC G+N   V  RV  Y DYC++FGV PG  L C
Sbjct:  115 FLNAARSYSGFANDRTNDDSKREIAAFFAHVTHETGHMCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNYGPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWMNNVHQVMSQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVSPGGNLYC 285          
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.692e-46
Identity = 95/172 (55.23%), Postives = 114/172 (66.28%), Query Frame = 1
Query:    1 FITALNSYPAFGRT----DTNREVAAFFAHVTHETTDFCYIEEKNKADP-HCTSP---QYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMTYVHSALNQGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            F++ALNSY  FGR     D+ RE+AA FAH THET  FCYIEE + A   +C      QYPC++ K Y+GRGPIQL+ N NY  AG A  FDGL +PETV+ D V+SFKTALW+WM +V   +NQGFG TIR ING  EC G N   V  RV  YT+YC++ GV  G  L C
Sbjct:   99 FLSALNSYTDFGRVGSEDDSKREIAAAFAHFTHETGHFCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNYGPAGSANNFDGLGAPETVSNDVVVSFKTALWYWMQHVRPVINQGFGATIRAINGALECDGANPTTVQARVNYYTEYCRQLGVATGDNLTC 270          
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 1.870e-45
Identity = 93/174 (53.45%), Postives = 116/174 (66.67%), Query Frame = 1
Query:    1 FITALNSYPAFGRT----DTNREVAAFFAHVTHETTDFCYIEEKN-KADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFW----MTYVHSALNQGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            F+ A+++YP FG      D  RE+AA+FAHVTHET   CYIEE++  A+ +C  S QYPC   K Y+GRGP+QL+ N NYIDAG+ + FDGLN P+ V RD +ISFKT+LWFW    + YV    NQGFG TIR ING  EC G N  Q++ RV  Y +YC + GV PG  L C
Sbjct:   77 FLEAVSAYPGFGTKCTDEDRKREIAAYFAHVTHETGHLCYIEERDGHANNYCQESQQYPCNPNKEYFGRGPMQLSWNYNYIDAGKELHFDGLNDPDIVGRDPIISFKTSLWFWIRKGVQYVILDPNQGFGATIRIINGGQECDGHNTAQMMARVGYYQEYCAQLGVSPGNNLPC 250          
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 1.340e-43
Identity = 88/167 (52.69%), Postives = 107/167 (64.07%), Query Frame = 1
Query:    1 FITALNSYPAFGRTDTNREVAAFFAHVTHETTDFCYIEEKNKAD-PHC--TSPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMTYVHSALNQGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            FI A N++P F  + T RE+A  FAH THET  FCYIEE N A   +C   + QYPCA GK Y+GRGPIQL+ N NY   G+++  + L  PE V+ +  ++F+T LWFWM  V   LNQGFG TIR ING  EC G N   V  R+R Y DYC + GVDPGP L C
Sbjct:  103 FINAANTFPNFANSVTRREIATMFAHFTHETGHFCYIEEINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNYNYGACGQSLNLNLLGQPELVSSNPTVAFRTGLWFWMNSVRPVLNQGFGATIRAING-MECNGGNSGAVNARIRYYRDYCGQLGVDPGPNLSC 268          
BLAST of CX295084 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.668e-35
Identity = 86/203 (42.36%), Postives = 109/203 (53.69%), Query Frame = 1
Query:    1 FITALNSYPAFGRTDT----NREVAAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT-------------------YVHSALNQ--GFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 492
            FI+A  S+P FG T       RE+AAFFA  +HETT              +C++ E+     +CT S Q+PCA G+ Y+GRGPIQ++ N NY   GRAIG D LN+P+ VA D VISFK+A+WFWMT                    V  A N+  GFG     ING  ECG  +  +V DR+  Y  YC   GV PG  L+C
Sbjct:  101 FISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGVDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDC 303          
The following BLAST results are available for this feature:
BLAST of CX295084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIA_MAIZE2.789e-4955.88Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHIB_MAIZE2.361e-4854.12Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHIP_BETVU3.083e-4854.91Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHI5_ORYSJ3.083e-4856.73Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI6_ORYSJ5.259e-4854.86Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_ORYSJ1.172e-4755.56Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_PHAVU1.692e-4655.23Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHIT_DIOJA1.870e-4553.45Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHI4_BRANA1.340e-4352.69Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHI1_SOLTU6.668e-3542.36Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]

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Properties
Property NameValue
Genbank descriptionC05068D08SK DroRLeaf1 Citrus clementina cDNA clone C05068D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295084 ID=CX295084; Name=CX295084; organism=Citrus clementina; type=EST; length=622bp
TTTATTACTGCTCTCAATTCGTATCCTGCATTTGGCAGAACTGATACTAA
TCGTGAAGTGGCAGCATTTTTTGCCCATGTCACTCATGAAACAACAGATT
TTTGCTACATAGAAGAGAAGAATAAAGCAGATCCTCATTGTACATCTCCA
CAATACCCATGTGCCAATGGTAAATTCTACTACGGCCGGGGACCGATTCA
GCTCACCGGAAATGGAAACTACATAGACGCCGGAAGGGCCATCGGTTTCG
ACGGTCTGAACTCTCCGGAAACGGTAGCCAGGGACCGTGTCATATCTTTC
AAGACCGCTTTGTGGTTTTGGATGACATACGTGCACTCAGCACTAAACCA
AGGTTTTGGTGAAACAATTCGGAAAATTAATGGTCCTGCTGAATGCGGTG
GCCGAAACCGTGACCAAGTTCTGGATCGTGTTAGGCGTTACACTGATTAT
TGCAAAAGATTTGGTGTTGATCCTGGACCACGTCTTGAATGCTGAATAGA
TATTTTGTACAAAAAATATTACAGTATATGTATTATATTGTATCACAATA
AGCCAGAGTTATTTCAAACAACTTTCTCTGTTTGGTAACTCTGACGGAAT
AATTTTCTTGTACCTGATCATG
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