CX295085

Overview
NameCX295085
Unique NameCX295085
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14229 contig Ccv1_Contig14229:15..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295085 vs. ExPASy Swiss-Prot
Match: SKP1B_ARATH (SKP1-like protein 1B OS=Arabidopsis thaliana GN=SKP1B PE=1 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 8.827e-67
Identity = 126/171 (73.68%), Postives = 141/171 (82.46%), Query Frame = 2
Query:   38 MSSEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEARSGDKKD-------------DKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 511
            MS+ +KITLKSSDGE FE++E VALESQTIKHM+EDDC D  IPLPNVTS ILSKVIEYCK+HVEA    +                 S+++DLKTWD++F+KVDQ TLFDLILAANYLNIK LLDLTCQTVADMIKGKTPEEIRKTFNIKNDF+P+EEEEVRRENQWAFE
Sbjct:    1 MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYCKRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171          
BLAST of CX295085 vs. ExPASy Swiss-Prot
Match: SKP1A_ARATH (SKP1-like protein 1A OS=Arabidopsis thaliana GN=SKP1A PE=1 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.665e-65
Identity = 123/159 (77.36%), Postives = 139/159 (87.42%), Query Frame = 2
Query:   44 SEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEARSGDKKDDK---STEDDLKTWDADFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 511
            S KKI LKSSDGE+FEVEE VALESQTI HMVEDDC D  +PLPNVTS IL+KVIEYCK+HVEA +   +  +   +++DDLK WDADF+K+DQ TLF+LILAANYLNIK+LLDLTCQTVADMIKGKTPEEIR TFNIKNDF+P+EEEEVRRENQWAFE
Sbjct:    2 SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160          
BLAST of CX295085 vs. ExPASy Swiss-Prot
Match: ASK4_ARATH (SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK4 PE=1 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.574e-58
Identity = 112/160 (70.00%), Postives = 133/160 (83.12%), Query Frame = 2
Query:   44 SEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEARS---GDKKDDKSTE-DDLKTWDADFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 511
            ++K I LKSSDGE+FE+EE VA++SQTIKHM+EDDCAD  IPLPNVT  IL+KVIEYCKKHVEA +   GDK    S E D+LK WD++FVKVDQ TLFDLILAANYLNI  LLDLTC+ VAD ++GKTPE++R  FNIKND++P+EE EVR EN+WAFE
Sbjct:    4 TKKMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKKHVEAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKAVADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163          
BLAST of CX295085 vs. ExPASy Swiss-Prot
Match: ASK3_ARATH (SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK3 PE=1 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.179e-57
Identity = 111/160 (69.38%), Postives = 131/160 (81.88%), Query Frame = 2
Query:   44 SEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEARS---GDKKDDKSTED-DLKTWDADFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 511
            ++K I LKSSDGE+FEVEE VA+ESQTIKHM+EDDC D  IPLPNVT  IL+KVIEYCKKHVEA +   GDK    STE+ +LKTWD DFVKVD  TLFDL+ AANYLNI  LLDLTC+ VAD ++GKTP ++R+ FNIKND++P+EE EVR EN+WAFE
Sbjct:    4 TKKMIILKSSDGESFEVEEAVAVESQTIKHMIEDDCVDNGIPLPNVTGAILAKVIEYCKKHVEAAAEAGGDKDFYGSTENHELKTWDNDFVKVDHPTLFDLLRAANYLNISGLLDLTCKAVADQMRGKTPAQMREHFNIKNDYTPEEEAEVRNENRWAFE 163          
BLAST of CX295085 vs. ExPASy Swiss-Prot
Match: ASK11_ARATH (SKP1-like protein 11 OS=Arabidopsis thaliana GN=ASK11 PE=1 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.847e-54
Identity = 106/156 (67.95%), Postives = 124/156 (79.49%), Query Frame = 2
Query:   44 SEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEARSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 511
            S K I L SSDG++FEVEE VA++SQTI HMVEDDC    IPL NV S IL KVIEYCKKH    +     +  +E+DL  WD  F+ ++Q+T+F+LILAANYLNIKSLLDLTCQTVADMIKGKTPEEIR TFNI+NDF+P+EEE VR+ENQWAFE
Sbjct:    2 SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKKHHVDEA-----NPISEEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152          
BLAST of CX295085 vs. ExPASy Swiss-Prot
Match: ASK12_ARATH (SKP1-like protein 12 OS=Arabidopsis thaliana GN=ASK12 PE=1 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.493e-53
Identity = 106/157 (67.52%), Postives = 125/157 (79.62%), Query Frame = 2
Query:   44 SEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKK-HVEARSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 511
            S K I L SSDG++FEVEE VA++SQTI HMVEDDC    IPL NV S IL KVIEYCKK HV+      + +  +E+DL  WD  F+ ++Q+T+F+LILAANYLNIKSL DLTCQTVADMIKGKTPEEIR TFNI+NDF+P+EEE VR+ENQWAFE
Sbjct:    2 SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKKYHVD------EANPISEEDLNKWDEKFMDLEQSTIFELILAANYLNIKSLFDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152          
BLAST of CX295085 vs. ExPASy Swiss-Prot
Match: ASK13_ARATH (SKP1-like protein 13 OS=Arabidopsis thaliana GN=ASK13 PE=1 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.748e-50
Identity = 97/156 (62.18%), Postives = 122/156 (78.21%), Query Frame = 2
Query:   50 KKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEARSGDKKDDKSTEDDLKTWDADFVKV--DQNTLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 511
            K + L SSDGE+F+VEE VA++SQTI HM+EDDC    +P+ NVT  ILSKVIEYCKKHV + S  ++    ++D+LK WDA+F+K     +TLFD++LAANYLNIK LLDL CQTVADMI GK P+EIR    I+NDF+P+EEEE+R+ENQWAFE
Sbjct:    3 KMVMLLSSDGESFQVEEAVAVQSQTIAHMIEDDCVANGVPIANVTGVILSKVIEYCKKHVVSDSPTEE----SKDELKKWDAEFMKALEQSSTLFDVMLAANYLNIKDLLDLGCQTVADMITGKKPDEIRALLGIENDFTPEEEEEIRKENQWAFE 154          
BLAST of CX295085 vs. ExPASy Swiss-Prot
Match: ASK10_ARATH (SKP1-like protein 10 OS=Arabidopsis thaliana GN=ASK10 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 9.177e-48
Identity = 98/157 (62.42%), Postives = 115/157 (73.25%), Query Frame = 2
Query:   44 SEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKH-VEARSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 511
            S KKI LKSSDG +FEVEE  A + QTI HM EDDC D  IPLP VT  IL  VIEYC KH V+A +        +++DLK WD +F++  Q+T+FDLI+AANYLNIKSLLDL CQTVADMIK  T E  RK FNI+ND++ +EEE VRRENQW FE
Sbjct:    2 STKKIILKSSDGHSFEVEEEAACQCQTIAHMSEDDCTDNGIPLPEVTGKILEMVIEYCNKHHVDAAN------PCSDEDLKKWDKEFMEKYQSTIFDLIMAANYLNIKSLLDLACQTVADMIKDNTVEHTRKFFNIENDYTHEEEEAVRRENQWGFE 152          
BLAST of CX295085 vs. ExPASy Swiss-Prot
Match: ASK14_ARATH (SKP1-like protein 14 OS=Arabidopsis thaliana GN=ASK14 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.487e-47
Identity = 97/157 (61.78%), Postives = 118/157 (75.16%), Query Frame = 2
Query:   44 SEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEARSGDKKDDKSTEDDLKTWDADFVK-VDQNTLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 511
            S  KI L SSDGE+FEVEE VA + + ++HM+EDDC  T +PL NVT  ILS V+EYCKKHV        D++S  D+ KTWD +F+K  DQ T+F L+LAANYLNIK LLDL+ QTVAD IK KTPEEIR+ FNI+NDF+P+EE  VR+EN WAFE
Sbjct:    2 SSNKIVLSSSDGESFEVEEAVARKLKIVEHMIEDDCVVTEVPLQNVTGKILSIVVEYCKKHVV-------DEES--DEFKTWDEEFMKKFDQPTVFQLLLAANYLNIKGLLDLSAQTVADRIKDKTPEEIREIFNIENDFTPEEEAAVRKENAWAFE 149          
BLAST of CX295085 vs. ExPASy Swiss-Prot
Match: SKP1A_DICDI (SCF ubiquitin ligase complex protein SKP1a OS=Dictyostelium discoideum GN=fpaA PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.555e-47
Identity = 93/152 (61.18%), Postives = 122/152 (80.26%), Query Frame = 2
Query:   56 ITLKSSDGETFEVEETVALESQTIKHMVED-DCADTVIPLPNVTSTILSKVIEYCKKHVEARS--GDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQW 502
            + L+SSD + FE+E+ +A  S TIK+M+ED   +D+ IPLPNVTSTIL KV++YC+ H +  S  GD K D+   DD+  +D DF KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MI+GKTPEEIRK FNIKNDF+P+EEE++R+EN+W
Sbjct:    4 VKLESSDEKVFEIEKEIACMSVTIKNMIEDIGESDSPIPLPNVTSTILEKVLDYCRHHHQHPSPQGDDKKDEKRLDDIPPYDRDFCKVDQPTLFELILAANYLDIKPLLDVTCKTVANMIRGKTPEEIRKIFNIKNDFTPEEEEQIRKENEW 155          
The following BLAST results are available for this feature:
BLAST of CX295085 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
SKP1B_ARATH8.827e-6773.68SKP1-like protein 1B OS=Arabidopsis thaliana GN=SK... [more]
SKP1A_ARATH1.665e-6577.36SKP1-like protein 1A OS=Arabidopsis thaliana GN=SK... [more]
ASK4_ARATH2.574e-5870.00SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK... [more]
ASK3_ARATH2.179e-5769.38SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK... [more]
ASK11_ARATH3.847e-5467.95SKP1-like protein 11 OS=Arabidopsis thaliana GN=AS... [more]
ASK12_ARATH2.493e-5367.52SKP1-like protein 12 OS=Arabidopsis thaliana GN=AS... [more]
ASK13_ARATH5.748e-5062.18SKP1-like protein 13 OS=Arabidopsis thaliana GN=AS... [more]
ASK10_ARATH9.177e-4862.42SKP1-like protein 10 OS=Arabidopsis thaliana GN=AS... [more]
ASK14_ARATH3.487e-4761.78SKP1-like protein 14 OS=Arabidopsis thaliana GN=AS... [more]
SKP1A_DICDI4.555e-4761.18SCF ubiquitin ligase complex protein SKP1a OS=Dict... [more]

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Properties
Property NameValue
Genbank descriptionC05068D09SK DroRLeaf1 Citrus clementina cDNA clone C05068D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295085 ID=CX295085; Name=CX295085; organism=Citrus clementina; type=EST; length=728bp
GAGGATCGCTTTAGCGAAACCGTAACTCTCAGAAACGATGTCGTCTGAGA
AGAAGATCACTCTGAAGAGTTCGGACGGTGAGACGTTCGAGGTGGAGGAG
ACGGTGGCTCTCGAGTCGCAGACAATCAAGCACATGGTGGAGGACGACTG
CGCCGACACCGTAATCCCGCTGCCGAATGTGACGAGCACGATTCTCTCGA
AGGTTATCGAGTACTGCAAGAAGCACGTTGAGGCTAGGTCAGGGGACAAG
AAGGACGACAAGTCGACCGAGGATGATCTCAAGACCTGGGATGCAGACTT
CGTCAAGGTTGATCAGAATACCCTCTTTGATCTAATCTTGGCAGCCAATT
ACCTGAACATCAAGAGTTTGCTGGACTTGACCTGCCAAACTGTTGCAGAC
ATGATCAAGGGGAAGACTCCAGAGGAGATCCGCAAGACCTTCAACATCAA
GAATGACTTCTCTCCCGATGAAGAAGAGGAGGTTCGGAGAGAGAACCAAT
GGGCATTCGAGTGAAGGACTGAAGTGATGAAGGCTCGGTAATTAATATTT
GTGACAGGAATGTCGTTATAATGATAGTGGTCTTTTAGTATGTTGCCAGT
AGGTGTCTAGTATTGAACATCAACATTTCCTTTTGTCGTGAACCTGTGAA
TGCTGCTCGATATAAATGTCATTGAACCCTTGTCTATTGCATTATAGCTT
CGTTTCTTGTCTTTGCATGCTCTTCTTT
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