CX295096

Overview
NameCX295096
Unique NameCX295096
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295096_ssr137 microsatellite CX295096_ssr137:137..156. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14254 contig Ccv1_Contig14254:263..987. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295096 vs. ExPASy Swiss-Prot
Match: CSLB4_ARATH (Cellulose synthase-like protein B4 OS=Arabidopsis thaliana GN=CSLB4 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.274e-57
Identity = 101/191 (52.88%), Postives = 117/191 (61.26%), Query Frame = 2
Query:  173 RIQELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYFXXXXXXXXXXXXXXQDWKN------------------------------------------MKVISENKGGLSD--EIPHLVYISREKRPKHPHHYKAGAMNVL 613
            R+ ELPPVDMFVTTAD   EPP+I VNTVLSLLAV+YP +KLACYVSDD CSPL ++SL EASKFAK+WVPFCKKYNV++RAPF YF              +DW+                                           +KV+ ENKGG+ D  E+PH+VYISREKRP H HHYKAGAMN L
Sbjct:   88 RVHELPPVDMFVTTADPVREPPLIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIWVPFCKKYNVRVRAPFMYF-RNSPEAAEGSEFSKDWEMTKREYEKLSQKVEDATGSSHWLDAEDDFEAFLNTKSNDHSTIVKVVWENKGGVGDEKEVPHVVYISREKRPNHFHHYKAGAMNFL 277          

HSP 2 Score: 43.5134 bits (101), Expect = 2.274e-57
Identity = 20/39 (51.28%), Postives = 26/39 (66.67%), Query Frame = 1
Query:  610 IDCDMYANNPEIVLQAMCLHL-GSKNENEFAFIQSPQYF 723
            +DCDMY N  ++V QAMC+ L  S + N  AF+Q PQ F
Sbjct:  293 VDCDMYVNEADVVRQAMCIFLQKSMDSNHCAFVQYPQDF 331          

HSP 3 Score: 32.7278 bits (73), Expect = 2.274e-57
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 3
Query:   12 KWTPFTYKTYPQRLQER 62
            KW+P  YKTYP+RL ER
Sbjct:   72 KWSPADYKTYPERLDER 88          
BLAST of CX295096 vs. ExPASy Swiss-Prot
Match: CSLB6_ARATH (Cellulose synthase-like protein B6 OS=Arabidopsis thaliana GN=CSLB6 PE=2 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 1.873e-56
Identity = 99/191 (51.83%), Postives = 113/191 (59.16%), Query Frame = 2
Query:  173 RIQELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYFXXXXXXXXXXXXXXQDWKNM------------------------------------------KVISENKGGLSD--EIPHLVYISREKRPKHPHHYKAGAMNVL 613
            R+ +LP VDMFV TAD   EPPII VNTVLSLLAV+YP +KLACYVSDD CSPL ++SL EASKF K+W PFCKKYNV++RAPFRYF              +DWK M                                          KV+ ENKGG+ D  E+PHLVYISREKRP + HHYK GAMN L
Sbjct:   88 RVHDLPSVDMFVPTADPVREPPIIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFVKIWAPFCKKYNVRVRAPFRYF-LNPLVATDDSVFSKDWKMMKREYVKLCRKVEDATGDSHWLDADDDFEAFSNTKPNDHSTIVKVVWENKGGVGDEKEVPHLVYISREKRPNYLHHYKTGAMNFL 277          

HSP 2 Score: 53.1434 bits (126), Expect = 1.873e-56
Identity = 24/39 (61.54%), Postives = 29/39 (74.36%), Query Frame = 1
Query:  610 IDCDMYANNPEIVLQAMCLHL-GSKNENEFAFIQSPQYF 723
            +DCDMYAN P++V QAMC+ L  SKN N  AF+Q PQ F
Sbjct:  293 VDCDMYANEPDVVRQAMCVFLQNSKNSNHCAFVQFPQNF 331          

HSP 3 Score: 25.7942 bits (55), Expect = 1.873e-56
Identity = 10/17 (58.82%), Postives = 11/17 (64.71%), Query Frame = 3
Query:   12 KWTPFTYKTYPQRLQER 62
            KW+P   K YP RL ER
Sbjct:   72 KWSPAEDKPYPNRLDER 88          
BLAST of CX295096 vs. ExPASy Swiss-Prot
Match: CSLB3_ARATH (Cellulose synthase-like protein B3 OS=Arabidopsis thaliana GN=CSLB3 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.007e-55
Identity = 95/191 (49.74%), Postives = 115/191 (60.21%), Query Frame = 2
Query:  173 RIQELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYFXXXXXXXXXXXXXXQDWK------------------------------------------NMKVISENKG--GLSDEIPHLVYISREKRPKHPHHYKAGAMNVL 613
            R+ +LP VDMFVTTAD   EPPI+  NT+LSLLAV+YP +KLACYVSDD CSPL ++SL EASKFAK+WVPFCKKYN+++RAPFRYF              +DW+                                           +KV+ ENKG  G+ +E+PH VYISREKRP + HHYKAGAMN L
Sbjct:   88 RVHDLPSVDMFVTTADPVREPPILVANTLLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIWVPFCKKYNIKVRAPFRYF-LNPPAATESSEFSKDWEITKREYEKLSRRVEDATGDSHWLDAEDDFEDFSNTKPNDHSTIVKVVWENKGGVGVENEVPHFVYISREKRPNYLHHYKAGAMNFL 277          

HSP 2 Score: 47.3654 bits (111), Expect = 2.007e-55
Identity = 22/39 (56.41%), Postives = 27/39 (69.23%), Query Frame = 1
Query:  610 IDCDMYANNPEIVLQAMCLHL-GSKNENEFAFIQSPQYF 723
            +DCDMYAN  ++V QAMC+ L  S N N  AF+Q PQ F
Sbjct:  293 VDCDMYANEADVVRQAMCIFLQKSMNSNHCAFVQFPQEF 331          

HSP 3 Score: 31.9574 bits (71), Expect = 2.007e-55
Identity = 11/17 (64.71%), Postives = 15/17 (88.24%), Query Frame = 3
Query:   12 KWTPFTYKTYPQRLQER 62
            KW+P +YK+YP+RL ER
Sbjct:   72 KWSPASYKSYPERLDER 88          
BLAST of CX295096 vs. ExPASy Swiss-Prot
Match: CSLB5_ARATH (Cellulose synthase-like protein B5 OS=Arabidopsis thaliana GN=CSLB5 PE=2 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 6.956e-55
Identity = 104/226 (46.02%), Postives = 125/226 (55.31%), Query Frame = 2
Query:   80 LALIISASFAIVFVILQVXXXXXXXXCVRLN----RIQELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYFXXXXXXXXXXXXXXQDWKNM------------------------------------------KVISENKGGLSD--EIPHLVYISREKRPKHPHHYKAGAMNVL 613
            LA    + F++V++I              +N    R+ +LP +DMFV TAD   E PIITVNTVLSLLAV+YP +KLACYVSDD CSPL ++SL EASKF K+W PFCKKYNV++RAPFRYF              +DWK M                                          KV+ ENKGG+ D  E+PHLVYISREKRP + HHYK GAMN L
Sbjct:   53 LAFFCESCFSLVWLIFTCLKWSPAEDIPYINTLNERVHDLPSLDMFVPTADTVRESPIITVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFVKIWAPFCKKYNVRVRAPFRYF-LNPLVATDDSVFSKDWKMMKREYVKLCRKVEDATGDSHWLDADDDFEAFSNTKPNDHSTIVKVVWENKGGVGDEKEVPHLVYISREKRPNYLHHYKTGAMNFL 277          

HSP 2 Score: 53.1434 bits (126), Expect = 6.956e-55
Identity = 24/39 (61.54%), Postives = 29/39 (74.36%), Query Frame = 1
Query:  610 IDCDMYANNPEIVLQAMCLHL-GSKNENEFAFIQSPQYF 723
            +DCDMYAN P++V QAMC+ L  SKN N  AF+Q PQ F
Sbjct:  293 VDCDMYANEPDVVRQAMCVFLQNSKNSNHCAFVQFPQKF 331          
BLAST of CX295096 vs. ExPASy Swiss-Prot
Match: CSLB2_ARATH (Cellulose synthase-like protein B2 OS=Arabidopsis thaliana GN=CSLB2 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 9.748e-55
Identity = 97/191 (50.79%), Postives = 116/191 (60.73%), Query Frame = 2
Query:  173 RIQELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYFXXXXXXXXXXXXXXQDWKN------------------------------------------MKVISENKGGLSD--EIPHLVYISREKRPKHPHHYKAGAMNVL 613
            R+ +LP VDMFV TAD   EPPI+ VNTVLSLLAV+YP +KLACYVSDD CSPL ++SL EASKFAK+WVPFCKKYN+++RAPFRYF              +DW+                                           +KV+ ENKGG+ D  E+PH+VYISREKRP + HHYKAGAMN L
Sbjct:   88 RVYDLPSVDMFVPTADPVREPPIMVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIWVPFCKKYNLKVRAPFRYF-LNPFAATEGSEFSRDWEMTKREYEKLCRKVEDATGDSHLLGTDNELEAFSNTKPNDHSTIIKVVWENKGGVGDEKEVPHIVYISREKRPNYLHHYKAGAMNFL 277          

HSP 2 Score: 48.9062 bits (115), Expect = 9.748e-55
Identity = 22/39 (56.41%), Postives = 29/39 (74.36%), Query Frame = 1
Query:  610 IDCDMYANNPEIVLQAMCLHL-GSKNENEFAFIQSPQYF 723
            +DCDMYAN  ++V QAMC+ L  S+N+N  AF+Q PQ F
Sbjct:  293 VDCDMYANEADVVRQAMCIFLQKSQNQNHCAFVQFPQEF 331          

HSP 3 Score: 26.1794 bits (56), Expect = 9.748e-55
Identity = 10/17 (58.82%), Postives = 11/17 (64.71%), Query Frame = 3
Query:   12 KWTPFTYKTYPQRLQER 62
            KW+P   K YP RL ER
Sbjct:   72 KWSPAETKPYPDRLDER 88          
BLAST of CX295096 vs. ExPASy Swiss-Prot
Match: CSLH1_ORYSJ (Cellulose synthase-like protein H1 OS=Oryza sativa subsp. japonica GN=CSLH1 PE=2 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 8.052e-50
Identity = 88/193 (45.60%), Postives = 104/193 (53.89%), Query Frame = 2
Query:  173 RIQELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPV--HKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYFXXXXXXXXXXXXXXQDWKNMK-------------------------------------------VISENKGGLSDEIPHLVYISREKRPKHPHHYKAGAMNVLT 616
            RI ELP VDMFVTTAD  LEPP++TVNTVLSLLA+DYP    KLACYVSDD CSPL  Y+L EA++FA+ WVPFC+++ V +RAPFRYF              +DW  MK                                           +   N+    D  P L+Y+SREK P   HHYKAGAMN LT
Sbjct:   87 RIDELPAVDMFVTTADPVLEPPLVTVNTVLSLLALDYPAAGEKLACYVSDDGCSPLTCYALREAARFARTWVPFCRRHGVAVRAPFRYFSSTPEFGPADGKFLEDWTFMKSEYEKLVHRIEDADEPSLLRHGGGEFAEFLDVERGNHPTIIKVLWDNNRSRTGDGFPRLIYVSREKSPNLHHHYKAGAMNALT 279          

HSP 2 Score: 51.9878 bits (123), Expect = 8.052e-50
Identity = 22/38 (57.89%), Postives = 28/38 (73.68%), Query Frame = 1
Query:  610 IDCDMYANNPEIVLQAMCLHLGSKNENEFAFIQSPQYF 723
            +DCDM+ NNP +VL AMCL LG  +E   AF+Q+PQ F
Sbjct:  294 LDCDMFVNNPRVVLHAMCLLLGFDDEISCAFVQTPQKF 331          

HSP 3 Score: 25.7942 bits (55), Expect = 8.052e-50
Identity = 8/19 (42.11%), Postives = 13/19 (68.42%), Query Frame = 3
Query:    6 HCKWTPFTYKTYPQRLQER 62
            + KW+P  + T+P+ L ER
Sbjct:   69 NAKWSPVRFDTFPENLAER 87          
BLAST of CX295096 vs. ExPASy Swiss-Prot
Match: CSLB1_ARATH (Cellulose synthase-like protein B1 OS=Arabidopsis thaliana GN=CSLB1 PE=2 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 1.363e-49
Identity = 92/191 (48.17%), Postives = 112/191 (58.64%), Query Frame = 2
Query:  173 RIQELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYFXXXXXXXXXXXXXXQDWKN------------------------------------------MKVISENKGGLSD--EIPHLVYISREKRPKHPHHYKAGAMNVL 613
            R+ +LP VDMFV TAD   EPPI+ V+TVLSLLAV+YP +KLACYVSDD CSPL ++SL EASKFAK+WVPFCKKYN ++RAP RYF              +DW+                                           +KV+ ENKGG+ D  EIPH++YISREKRP + H+ K GAMN L
Sbjct:   88 RVHDLPSVDMFVPTADPVREPPIMVVDTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIWVPFCKKYNTRVRAPSRYFLKPISVATEDYEFNRDWEKTKREYEKLRRKVEDATGDSHMLDVEDDFEAFSNTKPNDHSTLVKVVWENKGGVGDEKEIPHIIYISREKRPNYVHNQKCGAMNFL 278          

HSP 2 Score: 40.0466 bits (92), Expect = 1.363e-49
Identity = 20/39 (51.28%), Postives = 26/39 (66.67%), Query Frame = 1
Query:  610 IDCDMYANNPEIVLQAMCLHL-GSKNENEFAFIQSPQYF 723
            +DCDMYAN+ ++V QAMC+ L  S N    AF+Q  Q F
Sbjct:  294 VDCDMYANDADVVRQAMCILLQESLNMKHCAFVQFRQEF 332          

HSP 3 Score: 24.6386 bits (52), Expect = 1.363e-49
Identity = 9/17 (52.94%), Postives = 11/17 (64.71%), Query Frame = 3
Query:   12 KWTPFTYKTYPQRLQER 62
            KW+P   K +P RL ER
Sbjct:   72 KWSPADTKPFPDRLDER 88          
BLAST of CX295096 vs. ExPASy Swiss-Prot
Match: CSLH3_ORYSJ (Putative cellulose synthase-like protein H3 OS=Oryza sativa subsp. japonica GN=CSLH3 PE=3 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 1.155e-31
Identity = 60/154 (38.96%), Postives = 74/154 (48.05%), Query Frame = 2
Query:  293 KLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYFXXXXXXXXXXXXXXQDWKNM------------------------------------------KVI----SENKGGLSDEIPHLVYISREKRPKHPHHYKAGAMNVLT 616
            +LACYVSDD CSP+ +Y+L EA+ FA+ WVPFC+++ V +RAPFRYF               DW  M                                          KVI    S+N+ G     PHL+Y+SREK P H HHYKAGAMN LT
Sbjct:  173 RLACYVSDDGCSPVTYYALREAAGFARTWVPFCRRHGVAVRAPFRYFASAPEFGPADRKFLDDWTFMKSEYDKLVRRIEDADETTLLRQGGGEFAEFMDAKRTNHRAIVKVIWDNNSKNRIGEEGGFPHLIYVSREKSPGHHHHYKAGAMNALT 326          

HSP 2 Score: 50.0618 bits (118), Expect = 1.155e-31
Identity = 21/38 (55.26%), Postives = 28/38 (73.68%), Query Frame = 1
Query:  610 IDCDMYANNPEIVLQAMCLHLGSKNENEFAFIQSPQYF 723
            +DCDM+AN+P++VL AMCL LG  +E    F+Q PQ F
Sbjct:  341 VDCDMFANDPQVVLHAMCLLLGFDDEISSGFVQVPQSF 378          
BLAST of CX295096 vs. ExPASy Swiss-Prot
Match: CSLH2_ORYSJ (Cellulose synthase-like protein H2 OS=Oryza sativa subsp. japonica GN=CSLH2 PE=2 SV=3)

HSP 1 Score: 124.405 bits (311), Expect = 6.136e-28
Identity = 59/86 (68.60%), Postives = 69/86 (80.23%), Query Frame = 2
Query:  182 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPV--HKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 433
            ELP VDM VTTAD  LEPP++TVNTVLSLLA+DYP    +LACYVSDD CSPL  ++L EA+ FA  WVPFC++Y V +RAPFRYF
Sbjct:  133 ELPAVDMLVTTADPALEPPLVTVNTVLSLLALDYPRAGERLACYVSDDGCSPLTCHALREAAGFAAAWVPFCRRYGVAVRAPFRYF 218          
BLAST of CX295096 vs. ExPASy Swiss-Prot
Match: CSLH2_ORYSI (Cellulose synthase-like protein H2 OS=Oryza sativa subsp. indica GN=CSLH2 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.136e-28
Identity = 59/86 (68.60%), Postives = 69/86 (80.23%), Query Frame = 2
Query:  182 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPV--HKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 433
            ELP VDM VTTAD  LEPP++TVNTVLSLLA+DYP    +LACYVSDD CSPL  ++L EA+ FA  WVPFC++Y V +RAPFRYF
Sbjct:  133 ELPAVDMLVTTADPALEPPLVTVNTVLSLLALDYPRAGERLACYVSDDGCSPLTCHALREAAGFAAAWVPFCRRYGVAVRAPFRYF 218          
The following BLAST results are available for this feature:
BLAST of CX295096 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CSLB4_ARATH2.274e-5752.88Cellulose synthase-like protein B4 OS=Arabidopsis ... [more]
CSLB6_ARATH1.873e-5651.83Cellulose synthase-like protein B6 OS=Arabidopsis ... [more]
CSLB3_ARATH2.007e-5549.74Cellulose synthase-like protein B3 OS=Arabidopsis ... [more]
CSLB5_ARATH6.956e-5546.02Cellulose synthase-like protein B5 OS=Arabidopsis ... [more]
CSLB2_ARATH9.748e-5550.79Cellulose synthase-like protein B2 OS=Arabidopsis ... [more]
CSLH1_ORYSJ8.052e-5045.60Cellulose synthase-like protein H1 OS=Oryza sativa... [more]
CSLB1_ARATH1.363e-4948.17Cellulose synthase-like protein B1 OS=Arabidopsis ... [more]
CSLH3_ORYSJ1.155e-3138.96Putative cellulose synthase-like protein H3 OS=Ory... [more]
CSLH2_ORYSJ6.136e-2868.60Cellulose synthase-like protein H2 OS=Oryza sativa... [more]
CSLH2_ORYSI6.136e-2868.60Cellulose synthase-like protein H2 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionC05068E09SK DroRLeaf1 Citrus clementina cDNA clone C05068E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295096 ID=CX295096; Name=CX295096; organism=Citrus clementina; type=EST; length=725bp
AGGGTCACTGCAAGTGGACTCCTTTTACCTACAAAACATATCCCCAACGT
CTCCAAGAAAGGTAACAAATCAAATAACGTTAGCATTAATAATTTCCGCA
TCATTTGCAATTGTCTTTGTCATTTTGCAAGTTACTACACACACACACAC
ACACACATGTGTACGACTCAACAGGATACAGGAGCTGCCCCCAGTGGACA
TGTTTGTGACAACTGCTGATGCTGAACTCGAGCCGCCAATCATCACTGTA
AACACAGTGCTGTCTTTGTTGGCAGTTGATTATCCAGTTCACAAGCTCGC
TTGCTATGTTTCTGATGATGCCTGCTCACCTCTCAATTTCTACTCTCTTG
TTGAAGCTTCTAAATTCGCTAAGCTTTGGGTTCCATTCTGTAAAAAGTAT
AATGTTCAAATTAGAGCTCCCTTTAGATACTTCCCAGATAGTGAGCCGTC
CGATTCCAGTTCAGGGGAACTCCTGCAAGACTGGAAAAACATGAAGGTTA
TATCGGAGAACAAAGGAGGTCTCTCAGATGAGATACCACATTTAGTTTAC
ATATCAAGAGAGAAAAGGCCAAAGCATCCCCATCACTACAAAGCAGGGGC
CATGAATGTATTGACTGCGACATGTATGCCAACAATCCAGAGATTGTTCT
TCAAGCTATGTGTTTGCATCTGGGCTCCAAGAACGAAAACGAATTTGCGT
TTATTCAATCTCCACAATATTTCTA
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