CX295102

Overview
NameCX295102
Unique NameCX295102
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295102 vs. ExPASy Swiss-Prot
Match: MYB23_ARATH (Transcription factor MYB23 OS=Arabidopsis thaliana GN=MYB23 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.924e-14
Identity = 34/37 (91.89%), Postives = 37/37 (100.00%), Query Frame = 1
Query:    1 SCRLRWMNYLSPNVNRGNFTEEEDDLIIRLHKLLGNR 111
            SCRLRWMNYLSPNVNRGNFT++E+DLIIRLHKLLGNR
Sbjct:   52 SCRLRWMNYLSPNVNRGNFTDQEEDLIIRLHKLLGNR 88          
BLAST of CX295102 vs. ExPASy Swiss-Prot
Match: GL1_ARATH (Trichome differentiation protein GL1 OS=Arabidopsis thaliana GN=GL1 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.924e-14
Identity = 34/37 (91.89%), Postives = 37/37 (100.00%), Query Frame = 1
Query:    1 SCRLRWMNYLSPNVNRGNFTEEEDDLIIRLHKLLGNR 111
            SCRLRWMNYLSPNVN+GNFTE+E+DLIIRLHKLLGNR
Sbjct:   54 SCRLRWMNYLSPNVNKGNFTEQEEDLIIRLHKLLGNR 90          
BLAST of CX295102 vs. ExPASy Swiss-Prot
Match: GL1_ARALY (Trichome differentiation protein GL1 OS=Arabidopsis lyrata GN=GL1 PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.924e-14
Identity = 34/37 (91.89%), Postives = 37/37 (100.00%), Query Frame = 1
Query:    1 SCRLRWMNYLSPNVNRGNFTEEEDDLIIRLHKLLGNR 111
            SCRLRWMNYLSPNVN+GNFTE+E+DLIIRLHKLLGNR
Sbjct:   54 SCRLRWMNYLSPNVNKGNFTEQEEDLIIRLHKLLGNR 90          
BLAST of CX295102 vs. ExPASy Swiss-Prot
Match: WER_ARATH (Transcription factor WER OS=Arabidopsis thaliana GN=WER PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.097e-13
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 1
Query:    1 SCRLRWMNYLSPNVNRGNFTEEEDDLIIRLHKLLGNR 111
            SCRLRWMNYLSPNV RGNFTE+E+DLIIRLHKLLGNR
Sbjct:   56 SCRLRWMNYLSPNVKRGNFTEQEEDLIIRLHKLLGNR 92          
BLAST of CX295102 vs. ExPASy Swiss-Prot
Match: MYB3_ARATH (Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11
Identity = 29/37 (78.38%), Postives = 34/37 (91.89%), Query Frame = 1
Query:    1 SCRLRWMNYLSPNVNRGNFTEEEDDLIIRLHKLLGNR 111
            SCRLRWMNYL P++ RGNFTEEED+LII+LH LLGN+
Sbjct:   52 SCRLRWMNYLRPDLKRGNFTEEEDELIIKLHSLLGNK 88          
BLAST of CX295102 vs. ExPASy Swiss-Prot
Match: MYB4_ARATH (Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.691e-11
Identity = 28/37 (75.68%), Postives = 34/37 (91.89%), Query Frame = 1
Query:    1 SCRLRWMNYLSPNVNRGNFTEEEDDLIIRLHKLLGNR 111
            SCRLRW+NYL P++ RGNFTEEED+LII+LH LLGN+
Sbjct:   52 SCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNK 88          
BLAST of CX295102 vs. ExPASy Swiss-Prot
Match: MYB08_ANTMA (Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.691e-11
Identity = 28/37 (75.68%), Postives = 34/37 (91.89%), Query Frame = 1
Query:    1 SCRLRWMNYLSPNVNRGNFTEEEDDLIIRLHKLLGNR 111
            SCRLRW+NYL P++ RGNFTEEED+LII+LH LLGN+
Sbjct:   52 SCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNK 88          
The following BLAST results are available for this feature:
BLAST of CX295102 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
MYB23_ARATH4.924e-1491.89Transcription factor MYB23 OS=Arabidopsis thaliana... [more]
GL1_ARATH4.924e-1491.89Trichome differentiation protein GL1 OS=Arabidopsi... [more]
GL1_ARALY4.924e-1491.89Trichome differentiation protein GL1 OS=Arabidopsi... [more]
WER_ARATH1.097e-1391.89Transcription factor WER OS=Arabidopsis thaliana G... [more]
MYB3_ARATH2.987e-1178.38Transcription factor MYB3 OS=Arabidopsis thaliana ... [more]
MYB4_ARATH8.691e-1175.68Transcription repressor MYB4 OS=Arabidopsis thalia... [more]
MYB08_ANTMA8.691e-1175.68Myb-related protein 308 OS=Antirrhinum majus GN=MY... [more]
back to top
Properties
Property NameValue
Genbank descriptionC05068F03SK DroRLeaf1 Citrus clementina cDNA clone C05068F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295102 ID=CX295102; Name=CX295102; organism=Citrus clementina; type=EST; length=715bp
AGTTGTAGGTTAAGGTGGATGAACTACCTGAGCCCAAATGTGAACCGAGG
CAACTTCACTGAGGAAGAAGATGATCTCATCATTAGACTCCATAAGCTCC
TTGGAAACAGGTTCTTTAATGTCAATTTTCTGACTTTTTCTTTTTTTCTT
TCATTTAACCATATTGCAGCAATAGTATATTTGCTTTTCAGGATGAACTT
CCTAGACTTGATACCTGTTTAAGTTACTAGATAAAGAGGGAGTTTGATAC
CTTTTCTCAGTAAAGGCACAGTGTTTGATTTTTTCTGATATTCATTTTTG
GATGAAATAACTATAGTGTAATTAATAGATGCTTACATACTAGTTAATCC
TGGCTCCCTTCTGGATTTTGTTGCTCATTTGTCCATTCAACTTTGATTCT
ATTATTTCTTCATCATTTTGAATCCTAGCTCTGTGACAAATACTGAATCA
TGGCAGGTGCATTATTAAGTATCAAATAGTGCACTAGAAACCTTATCTGG
GTGTGGCTAAGTTATACAATAATGTGACTTGCATCAATCTAAGAGTTTTC
TCCAACAACTCAAAAATATTTGACAACTAAATTTAACTTGTTTAGAACAA
CTCTTTTGTTGATTTAAGTTACTGCTAATTTTATCTTGATGTACTTATCA
GTTAATGTCCTTTAACATTTATTTCATTCATATTAGGTGGGCCTTAAATT
GCAAACGAGTGCCTG
back to top