CX295108

Overview
NameCX295108
Unique NameCX295108
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14055 contig Ccv1_Contig14055:642..1384. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295108 vs. ExPASy Swiss-Prot
Match: CUL4B_HUMAN (Cullin-4B OS=Homo sapiens GN=CUL4B PE=1 SV=3)

HSP 1 Score: 237.269 bits (604), Expect = 6.802e-62
Identity = 124/242 (51.24%), Postives = 166/242 (68.60%), Query Frame = 3
Query:   21 HISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGHGIVMD 743
            HI A I      S D V+FL  ++RCWQ+ C QM+MIR I L+LDRTYV Q   + S+WDMGL+LFR ++ S  +V++KT+ G+L +IERER GEA+DR+LL  LL M + L IY +SFE+ FLE T+  YAAEG K MQ+ +VP+YL HV  RL EE +R + YLD +T+K LIAT E+QLL  H++AIL KG   L+D +R +DL  +Y LFSRV   ++ L Q    YI+  G  IV++
Sbjct:  249 HIKAQIHQFREDSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRAHIISDQKVQNKTIDGILLLIERERNGEAIDRSLLRSLLSMLSDLQIYQDSFEQRFLEETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLITYLDQTTQKSLIATVEKQLLGEHLTAILQKGLNNLLDENRIQDLSLLYQLFSRVRGGVQVLLQQWIEYIKAFGSTIVIN 490          
BLAST of CX295108 vs. ExPASy Swiss-Prot
Match: CUL4A_HUMAN (Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3)

HSP 1 Score: 233.032 bits (593), Expect = 1.283e-60
Identity = 124/242 (51.24%), Postives = 162/242 (66.94%), Query Frame = 3
Query:   21 HISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGHGIVMD 743
            H+ A I      S D V+FL  +  CWQD C QM+MIR I L+LDRTYV Q   + S+WDMGL+LFR ++ S   V+ KT+ G+L +IERER GEAVDR+LL  LL M + L +Y +SFE  FLE T+  YAAEG + MQ+ +VP+YL HV  RL EE +R + YLD ST+KPLIA  E+QLL  H++AIL KG   L+D +R  DL +MY LFSRV    ++L Q  + YI+  G  IV++
Sbjct:  113 HVQAQILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLELFRTHIISDKMVQSKTIDGILLLIERERSGEAVDRSLLRSLLGMLSDLQVYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLDHSTQKPLIACVEKQLLGEHLTAILQKGLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFGTAIVIN 354          
BLAST of CX295108 vs. ExPASy Swiss-Prot
Match: CUL4A_MOUSE (Cullin-4A OS=Mus musculus GN=Cul4a PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 4.127e-59
Identity = 123/242 (50.83%), Postives = 159/242 (65.70%), Query Frame = 3
Query:   21 HISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGHGIVMD 743
            H+ A I      S D V+FL  +  CWQD C QM+MIR I L+LDRTYV Q   + S+WDMGL+LFR ++ S   V+ KT+ G+L +I RER GEAVDR+LL  LL M + L +Y +SFE  FLE T+  YAAEG + MQ  +VP+YL HV  RL EE +R + YLD ST+KPLIA  E+QLL  H++AIL KG   L+D +R  DL +MY LFSRV     +L Q  + YI+  G  IV++
Sbjct:  113 HVQAQILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRNHIISDRMVQSKTIDGILLLIGRERSGEAVDRSLLRSLLSMLSDLQVYKDSFELKFLEETNCLYAAEGQRLMQDREVPEYLNHVSKRLEEEADRVITYLDHSTQKPLIACVEKQLLGEHLTAILQKGLEHLLDENRVPDLTQMYQLFSRVKGGQHALLQHWSEYIKTFGTTIVIN 354          
BLAST of CX295108 vs. ExPASy Swiss-Prot
Match: CUL4_DICDI (Cullin-4 OS=Dictyostelium discoideum GN=culD PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.019e-49
Identity = 104/244 (42.62%), Postives = 160/244 (65.57%), Query Frame = 3
Query:   18 RHISAAIRSLV-GQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPN-VRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRVNALESLRQALAMYIRRTGHGIVMD 743
            +HI+  I+ LV   S D ++FL  +   W+D  +QM+MIR I LYLDRTYV Q  N V+S+WD+GL  F   LS  S +E KT+  LL  I  ER G+ +DR L++ L+KM ++L IY++ FE  F++ T+ FY  EG   + + + P YLK+V  RL++E ER + YL+ ST+K L+A  +RQL+ERH+  IL+KGF  +++G R EDL ++Y L + V  ++ ++++   YI++TG  ++ D
Sbjct:  121 KHITLTIKHLVLTMSSDPIIFLKSINSIWKDHTNQMIMIRSIFLYLDRTYVIQNSNTVKSIWDLGLFYFGNNLSQQSNLERKTIDSLLYSIRCEREGDEIDRDLIHSLVKMLSSLNIYTK-FEIEFIKETNRFYDMEGNSKINEIETPMYLKYVCERLNQEGERLMRYLEQSTKKQLMAVLDRQLIERHVDVILEKGFNAMVNGDRLEDLGKLYQLLNSVGEIKKIKESWQSYIKQTGIQMLND 363          
BLAST of CX295108 vs. ExPASy Swiss-Prot
Match: CUL3_DICDI (Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.603e-40
Identity = 97/251 (38.65%), Postives = 146/251 (58.17%), Query Frame = 3
Query:   18 RHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGI-----YSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILD---KGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGHGIVMD 743
            +H+ A  ++ V +S D    L L    W +    MLMIR I +Y+DR YVKQ  N+ S++D+GL LFR  ++  S ++ + +  LL M+++ER GE +DR L+ ++++M   LG+     Y E FEKP L  TS  Y A+    +Q    PDY+K VEI L EE ER   YLD S+   L    E+QL+  H+  ++D    G   ++   + EDL+RMY+LFSRV + L  ++  ++ Y++  G GIVMD
Sbjct:   79 KHLKAVAKT-VSESIDEKFLLEL-NSSWINHKTSMLMIRDILMYMDRNYVKQN-NLSSVFDLGLYLFRDNVAHCSTIKDRLLNTLLSMVQKEREGEVIDRILIKNIVQMLIDLGVNSKNVYIEDFEKPLLLKTSSHYQAQSQTLIQTCSCPDYMKKVEICLKEELERVSHYLDSSSEPKLKEVCEKQLISNHMRTLIDMENSGLISMLKDDKIEDLKRMYNLFSRVSDGLNLMKDVISSYVKEIGRGIVMD 326          
BLAST of CX295108 vs. ExPASy Swiss-Prot
Match: CUL3_XENTR (Cullin-3 OS=Xenopus tropicalis GN=cul3 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.380e-38
Identity = 86/232 (37.07%), Postives = 137/232 (59.05%), Query Frame = 3
Query:   75 FLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALG-----IYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILD---KGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGHGIVMD 743
            FL  + + W D    M+MIR I +Y+DR YV+Q  NV +++++GL +FR  +  Y  +       LL MI RER GE VDR  + +  +M   LG     +Y E FE PFLE ++EF+  E  K++ ++    Y+K VE R++EE ER +  LD ST +P++   ER+L+ +H+  I++    G   ++   +TEDL  MY LFSRV N L+++ + +++Y+R  G  +V +
Sbjct:  101 FLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQN-NVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVDRGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVMHCLDKSTEEPIVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLACMYKLFSRVPNGLKTMCECMSLYLREQGKALVSE 331          
BLAST of CX295108 vs. ExPASy Swiss-Prot
Match: CUL3B_XENLA (Cullin-3-B OS=Xenopus laevis GN=cul3b PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.380e-38
Identity = 86/232 (37.07%), Postives = 137/232 (59.05%), Query Frame = 3
Query:   75 FLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALG-----IYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILD---KGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGHGIVMD 743
            FL  + + W D    M+MIR I +Y+DR YV+Q  NV +++++GL +FR  +  Y  +       LL MI RER GE VDR  + +  +M   LG     +Y E FE PFLE ++EF+  E  K++ ++    Y+K VE R++EE ER +  LD ST +P++   ER+L+ +H+  I++    G   ++   +TEDL  MY LFSRV N L+++ + +++Y+R  G  +V +
Sbjct:  101 FLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQN-NVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVDRGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVMHCLDKSTEEPIVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLACMYKLFSRVPNGLKTMCECMSLYLREQGKALVSE 331          
BLAST of CX295108 vs. ExPASy Swiss-Prot
Match: CUL3A_XENLA (Cullin-3-A OS=Xenopus laevis GN=cul3a PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.380e-38
Identity = 86/232 (37.07%), Postives = 137/232 (59.05%), Query Frame = 3
Query:   75 FLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALG-----IYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILD---KGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGHGIVMD 743
            FL  + + W D    M+MIR I +Y+DR YV+Q  NV +++++GL +FR  +  Y  +       LL MI RER GE VDR  + +  +M   LG     +Y E FE PFLE ++EF+  E  K++ ++    Y+K VE R++EE ER +  LD ST +P++   ER+L+ +H+  I++    G   ++   +TEDL  MY LFSRV N L+++ + +++Y+R  G  +V +
Sbjct:  101 FLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQN-NVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVDRGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVMHCLDKSTEEPIVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLACMYKLFSRVPNGLKTMCECMSLYLREQGKALVSE 331          
BLAST of CX295108 vs. ExPASy Swiss-Prot
Match: CUL3_MOUSE (Cullin-3 OS=Mus musculus GN=Cul3 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.075e-38
Identity = 86/232 (37.07%), Postives = 136/232 (58.62%), Query Frame = 3
Query:   75 FLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALG-----IYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILD---KGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGHGIVMD 743
            FL  + + W D    M+MIR I +Y+DR YV+Q  NV +++++GL +FR  +  Y  +       LL MI RER GE VDR  + +  +M   LG     +Y E FE PFLE ++EF+  E  K++ ++    Y+K VE R++EE ER +  LD ST +P++   ER+L+ +H+  I++    G   ++   +TEDL  MY LFSRV N L+++ + ++ Y+R  G  +V +
Sbjct:  101 FLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQN-NVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVDRGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVMHCLDKSTEEPIVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLACMYKLFSRVPNGLKTMCECMSCYLREQGKALVSE 331          
BLAST of CX295108 vs. ExPASy Swiss-Prot
Match: CUL3_HUMAN (Cullin-3 OS=Homo sapiens GN=CUL3 PE=1 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 4.016e-38
Identity = 86/232 (37.07%), Postives = 136/232 (58.62%), Query Frame = 3
Query:   75 FLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALG-----IYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILD---KGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGHGIVMD 743
            FL  + + W D    M+MIR I +Y+DR YV+Q  NV +++++GL +FR  +  Y  +       LL MI RER GE VDR  + +  +M   LG     +Y E FE PFLE ++EF+  E  K++ ++    Y+K VE R++EE ER +  LD ST +P++   ER+L+ +H+  I++    G   ++   +TEDL  MY LFSRV N L+++ + ++ Y+R  G  +V +
Sbjct:  101 FLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQN-NVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVDRGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVMHCLDKSTEEPIVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSYLREQGKALVSE 331          
The following BLAST results are available for this feature:
BLAST of CX295108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
CUL4B_HUMAN6.802e-6251.24Cullin-4B OS=Homo sapiens GN=CUL4B PE=1 SV=3[more]
CUL4A_HUMAN1.283e-6051.24Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3[more]
CUL4A_MOUSE4.127e-5950.83Cullin-4A OS=Mus musculus GN=Cul4a PE=2 SV=1[more]
CUL4_DICDI1.019e-4942.62Cullin-4 OS=Dictyostelium discoideum GN=culD PE=3 ... [more]
CUL3_DICDI5.603e-4038.65Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 ... [more]
CUL3_XENTR1.380e-3837.07Cullin-3 OS=Xenopus tropicalis GN=cul3 PE=2 SV=1[more]
CUL3B_XENLA1.380e-3837.07Cullin-3-B OS=Xenopus laevis GN=cul3b PE=1 SV=1[more]
CUL3A_XENLA1.380e-3837.07Cullin-3-A OS=Xenopus laevis GN=cul3a PE=1 SV=1[more]
CUL3_MOUSE3.075e-3837.07Cullin-3 OS=Mus musculus GN=Cul3 PE=1 SV=1[more]
CUL3_HUMAN4.016e-3837.07Cullin-3 OS=Homo sapiens GN=CUL3 PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC05068F09SK DroRLeaf1 Citrus clementina cDNA clone C05068F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295108 ID=CX295108; Name=CX295108; organism=Citrus clementina; type=EST; length=743bp
GATTCGGCCGAGGGTGAAGACATATATCTGCTGCAATTCGATCGTTGGTC
GGTCAAAGCCCTGACTTGGTGGTTTTCTTATCACTGGTTGAGAGATGCTG
GCAGGATCTTTGTGATCAGATGTTGATGATTCGTGGTATAGCTTTGTATC
TAGATAGAACATATGTGAAACAAACACCAAATGTGCGTTCATTGTGGGAC
ATGGGATTGCAGCTTTTCCGGAAATATCTTTCTTCATATTCAGAAGTTGA
GCACAAAACTGTCACTGGTCTTTTAAGGATGATTGAGAGGGAAAGATTAG
GTGAAGCTGTTGATAGGACACTCCTTAATCATCTATTGAAGATGTTCACC
GCTCTGGGAATTTACTCAGAAAGCTTTGAGAAACCATTTCTTGAGTGCAC
GTCGGAGTTTTATGCCGCCGAAGGCATGAAATACATGCAGCAATCAGATG
TTCCAGATTACTTGAAGCACGTGGAGATAAGGTTGCATGAAGAACATGAA
AGATGTTTACTATACCTTGATGTAAGCACAAGAAAGCCACTTATAGCAAC
TGCCGAAAGGCAACTTCTTGAACGACATATATCTGCGATTCTCGACAAGG
GGTTCACAATGCTGATGGATGGCCATCGTACTGAGGACCTACAGAGGATG
TACTCACTATTTTCAAGGGTCAATGCTCTCGAATCATTAAGGCAGGCCCT
TGCTATGTACATTCGTAGAACTGGGCATGGCATTGTCATGGAT
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