CX295113

Overview
NameCX295113
Unique NameCX295113
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295113_ssr431 microsatellite CX295113_ssr431:431..440. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig612 contig Ccv1_Contig612:1..706. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295113 vs. ExPASy Swiss-Prot
Match: P2C51_ORYSJ (Probable protein phosphatase 2C 51 OS=Oryza sativa subsp. japonica GN=Os05g0572700 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.844e-21
Identity = 51/60 (85.00%), Postives = 53/60 (88.33%), Query Frame = 1
Query:    7 AEGGDSRAVLSRGGVVVPLSVDHKPDRHDELTRVEAAGGRVINWNGPRILGVLATSRSIG 186
            A  GDSRAVLSRGGV +PLS DHKPDR DEL RVEAAGGRVINWNG R+LGVLATSRSIG
Sbjct:  220 ANCGDSRAVLSRGGVALPLSTDHKPDRPDELERVEAAGGRVINWNGYRVLGVLATSRSIG 279          

HSP 2 Score: 89.3521 bits (220), Expect = 2.093e-17
Identity = 39/62 (62.90%), Postives = 49/62 (79.03%), Query Frame = 2
Query:  491 VFVSLNHVGDQYLKPFVISKPDVMVTERSDRDEFLILASDGLWDVVSNEAACQVVRRCFSGR 676
            V  +   +GD YLKPFV ++P+V V ER+D+DEFLILASDGLWDVVSNE AC++ R C +GR
Sbjct:  271 VLATSRSIGDYYLKPFVSAEPEVRVVERTDKDEFLILASDGLWDVVSNEVACKIARNCLNGR 332          
BLAST of CX295113 vs. ExPASy Swiss-Prot
Match: P2C08_ORYSJ (Probable protein phosphatase 2C 8 OS=Oryza sativa subsp. japonica GN=Os01g0656200 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.844e-21
Identity = 52/60 (86.67%), Postives = 53/60 (88.33%), Query Frame = 1
Query:    7 AEGGDSRAVLSRGGVVVPLSVDHKPDRHDELTRVEAAGGRVINWNGPRILGVLATSRSIG 186
            A  GDSRAVLSRGGV VPLS DHKPDR DE+ RVEAAGGRVINWNG RILGVLATSRSIG
Sbjct:  235 ANCGDSRAVLSRGGVAVPLSSDHKPDRPDEMERVEAAGGRVINWNGYRILGVLATSRSIG 294          

HSP 2 Score: 89.3521 bits (220), Expect = 2.093e-17
Identity = 39/70 (55.71%), Postives = 52/70 (74.29%), Query Frame = 2
Query:  491 VFVSLNHVGDQYLKPFVISKPDVMVTERSDRDEFLILASDGLWDVVSNEAACQVVRRCFSGRINGHPPST 700
            V  +   +GD YLKP+VI++P+V V +R+D+DEFLILASDGLWDVVSN+ AC++ R C SGR     P +
Sbjct:  286 VLATSRSIGDYYLKPYVIAEPEVTVMDRTDKDEFLILASDGLWDVVSNDVACKIARNCLSGRAASKYPES 355          
BLAST of CX295113 vs. ExPASy Swiss-Prot
Match: P2C78_ARATH (Probable protein phosphatase 2C 78 OS=Arabidopsis thaliana GN=At5g59220 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.712e-19
Identity = 42/64 (65.62%), Postives = 53/64 (82.81%), Query Frame = 2
Query:  512 VGDQYLKPFVISKPDVMVTERSDRDEFLILASDGLWDVVSNEAACQVVRRCFSGRINGHPPSTP 703
            +GD YLKP+VIS+P+V VT+R++ D+FLILASDGLWDVVSNE AC VVR C  G++NG   S+P
Sbjct:  295 IGDNYLKPYVISRPEVTVTDRANGDDFLILASDGLWDVVSNETACSVVRMCLRGKVNGQVSSSP 358          

HSP 2 Score: 87.0409 bits (214), Expect = 1.047e-16
Identity = 42/60 (70.00%), Postives = 48/60 (80.00%), Query Frame = 1
Query:    7 AEGGDSRAVLSRGGVVVPLSVDHKPDRHDELTRVEAAGGRVINWNGPRILGVLATSRSIG 186
            A  GDSRAVL R G  + LS DHKPDR DEL R++AAGGRVI W+GPR+LGVLA SR+IG
Sbjct:  237 ANCGDSRAVLCRNGKAIALSSDHKPDRPDELDRIQAAGGRVIYWDGPRVLGVLAMSRAIG 296          
BLAST of CX295113 vs. ExPASy Swiss-Prot
Match: P2C49_ORYSJ (Probable protein phosphatase 2C 49 OS=Oryza sativa subsp. japonica GN=Os05g0457200 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.256e-18
Identity = 45/60 (75.00%), Postives = 50/60 (83.33%), Query Frame = 1
Query:    7 AEGGDSRAVLSRGGVVVPLSVDHKPDRHDELTRVEAAGGRVINWNGPRILGVLATSRSIG 186
            A  GDSRAVL R GV VPLSVDHKPDR DEL R++AAGGRVI W+G R+LGVLA SR+IG
Sbjct:  229 ANSGDSRAVLCRAGVPVPLSVDHKPDRPDELERIKAAGGRVIYWDGARVLGVLAMSRAIG 288          

HSP 2 Score: 89.3521 bits (220), Expect = 2.093e-17
Identity = 45/64 (70.31%), Postives = 52/64 (81.25%), Query Frame = 2
Query:  512 VGDQYLKPFVISKPDVMVTERSDRDEFLILASDGLWDVVSNEAACQVVRRCFSGRINGHPPSTP 703
            +GD YLKP+V S+P+V VTER+D DE LILASDGLWDVV+NE AC+VVR CF  R NG PPS P
Sbjct:  287 IGDGYLKPYVTSEPEVTVTERADDDECLILASDGLWDVVTNEMACEVVRACF--RSNG-PPSPP 347          
BLAST of CX295113 vs. ExPASy Swiss-Prot
Match: P2C09_ORYSJ (Probable protein phosphatase 2C 9 OS=Oryza sativa subsp. japonica GN=Os01g0846300 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.252e-18
Identity = 45/60 (75.00%), Postives = 50/60 (83.33%), Query Frame = 1
Query:    7 AEGGDSRAVLSRGGVVVPLSVDHKPDRHDELTRVEAAGGRVINWNGPRILGVLATSRSIG 186
            A  GDSRAV+SR GV V LSVDHKPDR DEL R+EAAGGRVI W+G R+LGVLA SR+IG
Sbjct:  229 ANAGDSRAVISRAGVPVALSVDHKPDRPDELERIEAAGGRVIYWDGARVLGVLAMSRAIG 288          

HSP 2 Score: 85.5001 bits (210), Expect = 3.022e-16
Identity = 41/62 (66.13%), Postives = 49/62 (79.03%), Query Frame = 2
Query:  512 VGDQYLKPFVISKPDVMVTERSDRDEFLILASDGLWDVVSNEAACQVVRRCFSGRINGHPPS 697
            +GD YLKP+V S+P+V VTER+D DE LILASDGLWDVV+NE AC+VVR CF    N  PP+
Sbjct:  287 IGDGYLKPYVTSEPEVTVTERTDDDECLILASDGLWDVVTNEMACEVVRACFH---NNGPPA 345          
BLAST of CX295113 vs. ExPASy Swiss-Prot
Match: P2C56_ARATH (Protein phosphatase 2C 56 OS=Arabidopsis thaliana GN=ABI1 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.237e-17
Identity = 43/60 (71.67%), Postives = 47/60 (78.33%), Query Frame = 1
Query:    7 AEGGDSRAVLSRGGVVVPLSVDHKPDRHDELTRVEAAGGRVINWNGPRILGVLATSRSIG 186
            A  GDSRAVL RG   +PLSVDHKPDR DE  R+EAAGG+VI WNG R+ GVLA SRSIG
Sbjct:  257 ANCGDSRAVLCRGKTALPLSVDHKPDREDEAARIEAAGGKVIQWNGARVFGVLAMSRSIG 316          
BLAST of CX295113 vs. ExPASy Swiss-Prot
Match: P2C37_ARATH (Protein phosphatase 2C 37 OS=Arabidopsis thaliana GN=PP2CA PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.110e-17
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = 1
Query:   16 GDSRAVLSRGGVVVPLSVDHKPDRHDELTRVEAAGGRVINWNGPRILGVLATSRSIG 186
            GDSRAVL R GV +PLSVDHKPDR DEL R++ AGGRVI W+G R+LGVLA SR+IG
Sbjct:  240 GDSRAVLCRNGVAIPLSVDHKPDRPDELIRIQQAGGRVIYWDGARVLGVLAMSRAIG 296          

HSP 2 Score: 79.7221 bits (195), Expect = 1.658e-14
Identity = 36/54 (66.67%), Postives = 41/54 (75.93%), Query Frame = 2
Query:  512 VGDQYLKPFVISKPDVMVTERSDRDEFLILASDGLWDVVSNEAACQVVRRCFSG 673
            +GD YLKP+VI  P+V VT+R+D DE LILASDGLWDVV NE AC V R C  G
Sbjct:  295 IGDNYLKPYVIPDPEVTVTDRTDEDECLILASDGLWDVVPNETACGVARMCLRG 348          
BLAST of CX295113 vs. ExPASy Swiss-Prot
Match: P2C68_ORYSJ (Probable protein phosphatase 2C 68 OS=Oryza sativa subsp. japonica GN=Os09g0325700 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.701e-17
Identity = 45/60 (75.00%), Postives = 47/60 (78.33%), Query Frame = 1
Query:    7 AEGGDSRAVLSRGGVVVPLSVDHKPDRHDELTRVEAAGGRVINWNGPRILGVLATSRSIG 186
            A  GDSRAVL RGG  V LS DHKPDR DEL R+EAAGGRVI W G R+LGVLA SRSIG
Sbjct:  208 ANCGDSRAVLCRGGAPVQLSSDHKPDRPDELERIEAAGGRVIFWEGARVLGVLAMSRSIG 267          

HSP 2 Score: 77.7962 bits (190), Expect = 6.302e-14
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 2
Query:  512 VGDQYLKPFVISKPDVMVTERSDRDEFLILASDGLWDVVSNEAACQVVRRC 664
            +GD YLKP+V + P+V VT RSD DE LILASDGLWDVVSNEAAC+V + C
Sbjct:  266 IGDAYLKPYVTAVPEVTVTGRSDFDECLILASDGLWDVVSNEAACEVAQSC 316          
BLAST of CX295113 vs. ExPASy Swiss-Prot
Match: P2C30_ORYSJ (Probable protein phosphatase 2C 30 OS=Oryza sativa subsp. japonica GN=Os03g0268600 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.368e-16
Identity = 41/60 (68.33%), Postives = 47/60 (78.33%), Query Frame = 1
Query:    7 AEGGDSRAVLSRGGVVVPLSVDHKPDRHDELTRVEAAGGRVINWNGPRILGVLATSRSIG 186
            A  GDSRAVL RGG  +PLS DHKPDR DEL R+ AAGGRVI W+G R+ G+LA SR+IG
Sbjct:  207 ANCGDSRAVLCRGGAAIPLSCDHKPDRPDELERIHAAGGRVIFWDGARVFGMLAMSRAIG 266          

HSP 2 Score: 79.7221 bits (195), Expect = 1.658e-14
Identity = 41/58 (70.69%), Postives = 44/58 (75.86%), Query Frame = 2
Query:  512 VGDQYLKPFVISKPDVMVTERSD-RDEFLILASDGLWDVVSNEAACQVVRRCF--SGR 676
            +GD YLKP+VI  P+V V ER D  DEFLILASDGLWDVVSNE AC VVR C   SGR
Sbjct:  265 IGDSYLKPYVICDPEVRVMERKDGEDEFLILASDGLWDVVSNEVACNVVRACLRSSGR 322          
BLAST of CX295113 vs. ExPASy Swiss-Prot
Match: P2C24_ARATH (Probable protein phosphatase 2C 24 OS=Arabidopsis thaliana GN=At2g29380 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.368e-16
Identity = 43/60 (71.67%), Postives = 47/60 (78.33%), Query Frame = 1
Query:    7 AEGGDSRAVLSRGGVVVPLSVDHKPDRHDELTRVEAAGGRVINWNGPRILGVLATSRSIG 186
            A  GDSRAVL R G  VPLS DHKPDR DEL R+E AGGRVI W+ PR+LGVLA SR+IG
Sbjct:  206 ANCGDSRAVLCRNGKPVPLSTDHKPDRPDELDRIEGAGGRVIYWDCPRVLGVLAMSRAIG 265          

HSP 2 Score: 73.9442 bits (180), Expect = 9.099e-13
Identity = 34/54 (62.96%), Postives = 41/54 (75.93%), Query Frame = 2
Query:  512 VGDQYLKPFVISKPDVMVTERSDRDEFLILASDGLWDVVSNEAACQVVRRCFSG 673
            +GD YLKP+V  +P+V +T+R D D+ LILASDGLWDVVSNE AC V R C  G
Sbjct:  264 IGDNYLKPYVSCEPEVTITDRRD-DDCLILASDGLWDVVSNETACSVARMCLRG 316          
The following BLAST results are available for this feature:
BLAST of CX295113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
P2C51_ORYSJ1.844e-2185.00Probable protein phosphatase 2C 51 OS=Oryza sativa... [more]
P2C08_ORYSJ1.844e-2186.67Probable protein phosphatase 2C 8 OS=Oryza sativa ... [more]
P2C78_ARATH1.712e-1965.63Probable protein phosphatase 2C 78 OS=Arabidopsis ... [more]
P2C49_ORYSJ3.256e-1875.00Probable protein phosphatase 2C 49 OS=Oryza sativa... [more]
P2C09_ORYSJ4.252e-1875.00Probable protein phosphatase 2C 9 OS=Oryza sativa ... [more]
P2C56_ARATH1.237e-1771.67Protein phosphatase 2C 56 OS=Arabidopsis thaliana ... [more]
P2C37_ARATH2.110e-1773.68Protein phosphatase 2C 37 OS=Arabidopsis thaliana ... [more]
P2C68_ORYSJ4.701e-1775.00Probable protein phosphatase 2C 68 OS=Oryza sativa... [more]
P2C30_ORYSJ1.368e-1668.33Probable protein phosphatase 2C 30 OS=Oryza sativa... [more]
P2C24_ARATH1.368e-1671.67Probable protein phosphatase 2C 24 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC05068G02SK DroRLeaf1 Citrus clementina cDNA clone C05068G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295113 ID=CX295113; Name=CX295113; organism=Citrus clementina; type=EST; length=705bp
GATTCGGCCGAGGGTGGGGATTCTAGGGCCGTGCTCTCTAGAGGTGGTGT
TGTTGTGCCATTGTCCGTTGATCATAAGCCTGACAGACATGATGAACTGA
CAAGAGTAGAAGCTGCTGGAGGAAGGGTCATAAACTGGAACGGCCCCCGA
ATCTTAGGAGTTCTTGCCACCTCCAGATCTATAGGTATGTAATTAAATAC
ATCCTGTGCCTAGTATCTTAGATTACATCAATTTAATAAATTCTATCAAG
AAAAGTTATACACAAATCACTCACCACTCAATTTAATGAATTGGATAGTA
ATATGATTAGCATGATGAGTACATATACATGATGTTATCTTAAGTATATT
AATTGGCTTGGATAACCGGCTAATTCTTCTTGAGCTAACTTTAGGCCCAT
AAGTTTTTATGATGAGGTTGATTTCATGGAATATATATATTTTTTAAAAT
TATTAAGAAAAGTTCTTATTAGTGCGGTCAATATAACGTGGTATTTGTAA
GTTTGAACCATGTAGGCGATCAATACTTGAAACCATTTGTGATATCAAAG
CCAGATGTGATGGTGACTGAAAGAAGCGACCGCGATGAATTCCTCATACT
TGCTAGCGATGGCTTATGGGATGTTGTATCAAATGAAGCAGCATGCCAAG
TCGTGAGGAGATGTTTCAGCGGCCGGATAAATGGGCATCCTCCGTCGACG
CCGGG
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