CX295117

Overview
NameCX295117
Unique NameCX295117
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295117_ssr8 microsatellite CX295117_ssr8:8..22. BLAST: Citrus ESTs to Prunus persica proteins V1
CX295117_ssr110 microsatellite CX295117_ssr110:110..121. BLAST: Citrus ESTs to Prunus persica proteins V1
CX295117_ssr589 microsatellite CX295117_ssr589:589..600. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of CX295117 vs. ExPASy Swiss-Prot
Match: RK35_SPIOL (50S ribosomal protein L35, chloroplastic OS=Spinacia oleracea GN=RPL35 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.268e-32
Identity = 72/100 (72.00%), Postives = 84/100 (84.00%), Query Frame = 1 
Query:  220 PLLFRHNNFPT---TVTQNRPQTVTVFAAKGYKMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCLPYLKVNRQ 510
            P++ ++    T   +V+ + P + TVFAAKGYKMKTHKASAKRFRVTGKGKI+RRRAGKQHLLAKKNTKRK RLSK+ +V RSDYDNVIG LPYLKVNR+
Sbjct:   60 PIVLKNKRISTVDSSVSTSSP-SFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHLLAKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRK 158
[Close]
BLAST of CX295117 vs. ExPASy Swiss-Prot
Match: RL35_ANAVT (50S ribosomal protein L35 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rpmI PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.864e-11
Identity = 36/63 (57.14%), Postives = 44/63 (69.84%), Query Frame = 1 
Query:  307 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCLPYL 495
            K+KT KA+AKRFR TG GKI+RR+A K HLL  K T +K + SKM  V+  D +NV   LPYL
Sbjct:    3 KLKTRKAAAKRFRATGTGKIVRRKAFKNHLLEHKTTNKKRQFSKMAIVNERDEENVRLMLPYL 65
[Close]
BLAST of CX295117 vs. ExPASy Swiss-Prot
Match: RL35_ANASP (50S ribosomal protein L35 OS=Anabaena sp. (strain PCC 7120) GN=rpmI PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.864e-11
Identity = 36/63 (57.14%), Postives = 44/63 (69.84%), Query Frame = 1 
Query:  307 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCLPYL 495
            K+KT KA+AKRFR TG GKI+RR+A K HLL  K T +K + SKM  V+  D +NV   LPYL
Sbjct:    3 KLKTRKAAAKRFRATGTGKIVRRKAFKNHLLEHKTTNKKRQFSKMAIVNERDEENVRLMLPYL 65
The following BLAST results are available for this feature:
BLAST of CX295117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RK35_SPIOL3.268e-3272.0050S ribosomal protein L35, chloroplastic OS=Spinac... [more]
RL35_ANAVT1.864e-1157.1450S ribosomal protein L35 OS=Anabaena variabilis (... [more]
RL35_ANASP1.864e-1157.1450S ribosomal protein L35 OS=Anabaena sp. (strain ... [more]
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Properties
Property NameValue
Genbank descriptionC05068G06SK DroRLeaf1 Citrus clementina cDNA clone C05068G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295117 ID=CX295117; Name=CX295117; organism=Citrus clementina; type=EST; length=739bp
CAATTCATCTTCTTCTTCTTCTTCAATATCCTTGGCAGAAGATAAAACGA
AACGAAAGAAAACATGGCTTCGATGATATCTTTCAATTTAAAATTTTGCC
CACTATGCCCTTCTTCTTCTTCAGTGAGAGCCTCTCGTGGCTCATCACTC
CGACTGGCTCTATCCAACAAGCTTAACAACTCGCTCAGACTCAATTCAAG
CTACAGCATTTCCGCCTCTCCTTTACTCTTCCGTCATAACAACTTCCCCA
CAACAGTTACTCAAAATAGGCCTCAAACGGTCACTGTTTTTGCCGCAAAA
GGTTACAAAATGAAAACCCACAAGGCATCCGCGAAGAGGTTTAGGGTGAC
TGGTAAAGGAAAAATATTGAGGAGGAGAGCTGGAAAGCAGCATTTATTAG
CTAAGAAAAACACTAAGAGAAAATTACGCCTCTCTAAAATGCACGAGGTT
AGCCGAAGTGACTACGACAATGTTATAGGTTGCTTGCCATATCTCAAGGT
TAACAGGCAAGCAAAGTAGAAGTGATTTTCACAGTTTGCAGACGACCTAT
GTAATTTCCGTTTGCCTGACAGCCTGAATTTCTCACATTTTGTTTGTTTG
CTAACAACGAAGTGCTAGCAATTGTTTTATTTACCCTAATTGATCATTTT
GGCTCTTATTTTGCTGATGTTTCCACCACAAAGCTCAAAATCAAGCAAGT
TCACTAGTACAGTATGCTTGTTGGTGTTGGTTGTCAAGG
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