CX295120

Overview
NameCX295120
Unique NameCX295120
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295120 vs. ExPASy Swiss-Prot
Match: SF3_HELAN (Pollen-specific protein SF3 OS=Helianthus annuus GN=SF3 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.364e-37
Identity = 66/127 (51.97%), Postives = 95/127 (74.80%), Query Frame = 1
Query:   19 HYSSMEGVLYCKPHFEQLFKESGNFNKNFQ-SPAKSAEKLTPELTRSPSKAASMFSGTQEKCASCSKTVYPLEKVAVENQAYHKTCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHL 396
            +++S +GV+YC+ HF+QLFK +G+  K+F  +P    E+   + T+S ++ +S F GT++KC +C+K VYP+E+V V+  AYH+ CFKC HGGC+ISPSNY A EG LYCKHH  QLFK+KG+Y+ L
Sbjct:   49 NFNSFDGVVYCRHHFDQLFKRTGSLEKSFDGTPKFKPERTFSQETQSANRLSSFFEGTRDKCNACAKIVYPIERVKVDGTAYHRACFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLFKKKGNYSQL 175          

HSP 2 Score: 85.5001 bits (210), Expect = 2.797e-16
Identity = 32/69 (46.38%), Postives = 47/69 (68.12%), Query Frame = 1
Query:  178 FSGTQEKCASCSKTVYPLEKVAVENQAYHKTCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGS 384
            F+GT +KC  C KTVY ++K+    + YHK CF+C H   ++  SN+ + +G++YC+HHF QLFK  GS
Sbjct:    4 FTGTTQKCTVCEKTVYLVDKLVANQRVYHKACFRCHHCNSTLKLSNFNSFDGVVYCRHHFDQLFKRTGS 72          
BLAST of CX295120 vs. ExPASy Swiss-Prot
Match: XIRP2_MOUSE (Xin actin-binding repeat-containing protein 2 OS=Mus musculus GN=Xirp2 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.304e-17
Identity = 43/112 (38.39%), Postives = 61/112 (54.46%), Query Frame = 1
Query:   88 NFNKNFQSPAKSAEKLTPELTRSPSKA-----------ASMFSGTQEKCASCSKTVYPLEKVAVENQAYHKTCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYN 390
            N  +NFQ   + +E++   +    S A            S F   +E C  C KTVYP+E +  + Q +HK+CF+C H    +S  NYA+L G +YCK HF QLFK KG+Y+
Sbjct: 3209 NLRRNFQKTWQESERVFQRVGYETSDAHATEMSRAFQEESAFLSDKEICIICQKTVYPMECLIADKQNFHKSCFRCHHCSSKLSLGNYASLHGRIYCKPHFKQLFKSKGNYD 3320          
BLAST of CX295120 vs. ExPASy Swiss-Prot
Match: LIMA1_MOUSE (LIM domain and actin-binding protein 1 OS=Mus musculus GN=Lima1 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.636e-17
Identity = 38/80 (47.50%), Postives = 52/80 (65.00%), Query Frame = 1
Query:  154 SPSKAASMFSG-TQEKCASCSKTVYPLEKVAVENQAYHKTCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYN 390
            SPSK A  F    +E C  C KTVYP+E++    Q +H +CF+CS+    +S   YA+L G +YCK HF+QLFK KG+Y+
Sbjct:  372 SPSKTAKKFQAPAKESCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYD 451          
BLAST of CX295120 vs. ExPASy Swiss-Prot
Match: LIMD2_RAT (LIM domain-containing protein 2 OS=Rattus norvegicus GN=Limd2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.256e-16
Identity = 38/94 (40.43%), Postives = 58/94 (61.70%), Query Frame = 1
Query:  109 SPAKSAEKLTPELTRSPSKAASMFSGTQEKCASCSKTVYPLEKVAVENQAYHKTCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYN 390
            +P+  A+  +   T   SK+ S+ +  +E CA+C KTVYP+E++  +   +H +CF C H    +S  +YAA+ G  YCK HF QLFK KG+Y+
Sbjct:   11 TPSHEAKGSSGNSTVQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAAMHGEFYCKPHFQQLFKSKGNYD 104          
BLAST of CX295120 vs. ExPASy Swiss-Prot
Match: LIMD2_BOVIN (LIM domain-containing protein 2 OS=Bos taurus GN=LIMD2 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.142e-16
Identity = 39/94 (41.49%), Postives = 57/94 (60.64%), Query Frame = 1
Query:  109 SPAKSAEKLTPELTRSPSKAASMFSGTQEKCASCSKTVYPLEKVAVENQAYHKTCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYN 390
            +P+  A+      T   SK+ S+ +  +E CA+C KTVYP+E++  +   +H +CF C H    +S  +YAAL G  YCK HF QLFK KG+Y+
Sbjct:   11 TPSHEAKGGGSSSTVQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIFHSSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYD 104          
BLAST of CX295120 vs. ExPASy Swiss-Prot
Match: LIMA1_HUMAN (LIM domain and actin-binding protein 1 OS=Homo sapiens GN=LIMA1 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.142e-16
Identity = 41/95 (43.16%), Postives = 56/95 (58.95%), Query Frame = 1
Query:  109 SPAKSAEKLTPELTRSPSKAASMFSG-TQEKCASCSKTVYPLEKVAVENQAYHKTCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYN 390
            SP   A  L+     SP KA   F    +E C  C KTVYP+E++    Q +H +CF+CS+    +S   YA+L G +YCK HF+QLFK KG+Y+
Sbjct:  362 SPDSRASSLSES---SPPKAMKKFQAPARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYD 453          
BLAST of CX295120 vs. ExPASy Swiss-Prot
Match: LIMD2_MOUSE (LIM domain-containing protein 2 OS=Mus musculus GN=Limd2 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.797e-16
Identity = 37/94 (39.36%), Postives = 58/94 (61.70%), Query Frame = 1
Query:  109 SPAKSAEKLTPELTRSPSKAASMFSGTQEKCASCSKTVYPLEKVAVENQAYHKTCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYN 390
            +P+  A+  +   T   SK+ S+ +  +E CA+C KTVYP+E++  +   +H +CF C H    +S  +YAA+ G  YC+ HF QLFK KG+Y+
Sbjct:   11 TPSHEAKGSSGSSTVQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAAMHGEFYCRPHFQQLFKSKGNYD 104          
BLAST of CX295120 vs. ExPASy Swiss-Prot
Match: LIMD2_HUMAN (LIM domain-containing protein 2 OS=Homo sapiens GN=LIMD2 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.653e-16
Identity = 36/77 (46.75%), Postives = 51/77 (66.23%), Query Frame = 1
Query:  160 SKAASMFSGTQEKCASCSKTVYPLEKVAVENQAYHKTCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYN 390
            SK+ S+ +  +E CA+C KTVYP+E++  +   +H +CF C H    +S  +YAAL G  YCK HF QLFK KG+Y+
Sbjct:   27 SKSFSLRAQVKETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYD 103          
The following BLAST results are available for this feature:
BLAST of CX295120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SF3_HELAN8.364e-3751.97Pollen-specific protein SF3 OS=Helianthus annuus G... [more]
XIRP2_MOUSE3.304e-1738.39Xin actin-binding repeat-containing protein 2 OS=M... [more]
LIMA1_MOUSE5.636e-1747.50LIM domain and actin-binding protein 1 OS=Mus musc... [more]
LIMD2_RAT1.256e-1640.43LIM domain-containing protein 2 OS=Rattus norvegic... [more]
LIMD2_BOVIN2.142e-1641.49LIM domain-containing protein 2 OS=Bos taurus GN=L... [more]
LIMA1_HUMAN2.142e-1643.16LIM domain and actin-binding protein 1 OS=Homo sap... [more]
LIMD2_MOUSE2.797e-1639.36LIM domain-containing protein 2 OS=Mus musculus GN... [more]
LIMD2_HUMAN3.653e-1646.75LIM domain-containing protein 2 OS=Homo sapiens GN... [more]
back to top
Properties
Property NameValue
Genbank descriptionC05068G09SK DroRLeaf1 Citrus clementina cDNA clone C05068G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295120 ID=CX295120; Name=CX295120; organism=Citrus clementina; type=EST; length=675bp
GATTCGGCCGAGGCTGAGCATTACTCATCCATGGAAGGTGTTCTTTACTG
TAAGCCTCACTTTGAGCAGCTTTTCAAGGAGTCGGGTAACTTCAACAAGA
ATTTCCAGTCACCTGCAAAGTCAGCTGAGAAGTTAACTCCTGAGCTGACA
AGGTCGCCTAGCAAAGCTGCCAGCATGTTCTCTGGGACCCAAGAAAAATG
TGCTTCTTGCAGTAAAACAGTGTATCCGTTGGAGAAGGTAGCAGTGGAAA
ACCAGGCCTATCACAAGACATGTTTCAAGTGCTCGCATGGTGGTTGTTCC
ATTAGCCCATCAAATTATGCGGCCCTGGAAGGCATCTTGTATTGCAAACA
TCATTTCTCCCAATTGTTCAAGGAAAAAGGAAGCTACAACCACCTTATCA
AATCCGCTTCAATGAAGCGTGCAGCAGCCTCTGTTCCAGAAGCTTGAACA
TGTTATTCTTCCTTCTATTTAAATCTTATTTGGTGTGGGTTTTCTCCGGC
TTGTGGGTGTGCTTTCTATTTGGATCCCTCTTGTTGTTTTTTAGGGGAAC
TACCAAACCTTCAGTTCCCTCTGCTTCTTTGGATCATCATTGTTGGGACA
AATTTCATTTGATTAGACATACTGATTTATGGGATGCATAGTCCCGTCGT
CGTAAAAAAAAAAAAAAAAAAAAAA
back to top