CX295133

Overview
NameCX295133
Unique NameCX295133
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig688 contig Ccv1_Contig688:435..1131. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_ARATH (Riboflavin biosynthesis protein ribBA, chloroplastic OS=Arabidopsis thaliana GN=RIBBA PE=2 SV=2)

HSP 1 Score: 310.071 bits (793), Expect = 7.357e-84
Identity = 161/219 (73.52%), Postives = 173/219 (79.00%), Query Frame = 1
Query:   40 LQPDAIAFGALAPDTAPT-TXXXXXXXXXXXXXXPTEGFSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            L+ D+++ G LA D+AP                 PT GFSSIPEAIEDIRQGK               L+MAAQLATPEAMAFIV+HGTGIVCVSMK +DLERL LPLMV QKEN+EKL TAFTVTVDAKHGTTTGVSARDRATT+L+LASRDSKP DFNRPGHIFPLKYREGGVLKRAGHTEASVDL VLAG DP  VLCE+VDDDGSMARLPKLREF
Sbjct:   90 LEADSVSLGTLAADSAPAPANGFVAEDDDFELDLPTPGFSSIPEAIEDIRQGKLVVVVDDEDRENEGDLVMAAQLATPEAMAFIVRHGTGIVCVSMKEDDLERLHLPLMVNQKENEEKLSTAFTVTVDAKHGTTTGVSARDRATTILSLASRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLTVLAGLDPVGVLCEIVDDDGSMARLPKLREF 308          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_AQUAE (Riboflavin biosynthesis protein ribBA OS=Aquifex aeolicus GN=ribBA PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.507e-47
Identity = 99/183 (54.10%), Postives = 125/183 (68.31%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDA--KHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            F+++ EAIEDIRQGK               L+MAA+  TPEA+ F+ K+G G++C+S+  E  E+LDL  M     N +   T F V++DA  KHGTTTG+SA DRA T+    S D+KP DF RPGH+FPLK R GGVL+RAGHTEASVDLA LAG  PA V+CE++ DDG+MAR+P L EF
Sbjct:    9 FNTVEEAIEDIRQGKMVIVVDDPDRENEGDLVMAAEKVTPEAINFMAKYGRGLICLSLTPERCEQLDLHPMTPM--NTDPKGTYFCVSIDAHPKHGTTTGISAYDRALTIKLAISPDAKPSDFVRPGHVFPLKARPGGVLERAGHTEASVDLARLAGLYPAGVICEIMKDDGTMARVPDLMEF 189          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_SYNWW (Riboflavin biosynthesis protein ribBA OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=ribBA PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.039e-45
Identity = 97/181 (53.59%), Postives = 126/181 (69.61%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            FSSI E I+DI++GK               +I+AA+ A PEA+ F+  H  G++C+ + GE L+ L++  MV   EN +   TAFTVTVD + GTTTG+SA +RA TV  L    SKP DF +PGHIFPL+YREGGVL+RAGHTE S+DL  LAG  PAAV+CEV+++DG+MARLP+L EF
Sbjct:    2 FSSIEEVIQDIKEGKMIVLVDDEDRENEGDVIIAAEKAGPEAINFMATHAKGLICMPIIGERLDELEIHDMVT--ENTDNHETAFTVTVDYR-GTTTGISAFERAATVKALIDSVSKPSDFRKPGHIFPLRYREGGVLRRAGHTEGSIDLTRLAGLYPAAVICEVMNEDGTMARLPQLLEF 179          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_NEIMA (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Neisseria meningitidis serogroup A GN=ribB PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.356e-45
Identity = 91/180 (50.56%), Postives = 124/180 (68.89%), Query Frame = 1
Query:  154 SSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            S IPE + DI+ GK               L+MAAQ  TPEA+ F++KH  G+VC+ M GE +E+L LP+M   ++N  +  T FTV+++A HG TTG+SA DRA T+ T  S  +KP D  +PGHIFPL+ ++GGVL RAGHTEA VDLA + G  PAAV+CE+++DDG+MAR+P+L +F
Sbjct:    5 SPIPEILADIKVGKMVIITDAEDRENEGDLLMAAQFVTPEAINFMIKHARGLVCLPMDGEMVEKLGLPMMT--QKNGAQYGTNFTVSIEAAHGITTGISAADRALTIQTAVSPTAKPEDIVQPGHIFPLRAQKGGVLVRAGHTEAGVDLAQMNGLIPAAVICEIINDDGTMARMPELMKF 182          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_NEIMB (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Neisseria meningitidis serogroup B GN=ribB PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.314e-45
Identity = 90/180 (50.00%), Postives = 124/180 (68.89%), Query Frame = 1
Query:  154 SSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            S IPE + DI+ GK               L+MAAQ  TPEA+ F++KH  G+VC+ M GE +E+L LP+M   ++N  +  T FTV+++A HG TTG+SA DRA T+ T  S  +KP D  +PGHIFPL+ ++GGVL RAGHTEA VDLA + G  PA+V+CE+++DDG+MAR+P+L +F
Sbjct:    5 SPIPEILADIKAGKMVIITDAEDRENEGDLLMAAQFVTPEAINFMIKHARGLVCLPMDGEMVEKLGLPMMT--QKNGAQYGTNFTVSIEAAHGITTGISAADRALTIQTAVSPTAKPEDIVQPGHIFPLRAQKGGVLVRAGHTEAGVDLAQMNGLIPASVICEIINDDGTMARMPELMKF 182          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_PROMH (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Proteus mirabilis (strain HI4320) GN=ribB PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.301e-43
Identity = 88/178 (49.44%), Postives = 116/178 (65.17%), Query Frame = 1
Query:  160 IPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            +  A+E +R GK               ++  A+  T E MA  ++HG+GIVCV +  E  ++LDLP+MV  + N     TAFTVT++A  G TTGVSA DR TTV   A+ ++KP D NRPGH+FPL+ + GGVL R GHTEAS+DLA LAGF P AVLCE+ +DDG+MAR P++  F
Sbjct:   16 VERALEALRAGKGVMVLDDENRENEGDMVFVAETMTTEQMAMSIRHGSGIVCVCITEERRQQLDLPMMV--ENNTSHFHTAFTVTIEAAQGVTTGVSAADRLTTVRAAAADNAKPSDLNRPGHVFPLRAQPGGVLTRGGHTEASIDLATLAGFKPVAVLCELTNDDGTMARAPEVVTF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_YERE8 (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=ribB PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.833e-42
Identity = 86/178 (48.31%), Postives = 117/178 (65.73%), Query Frame = 1
Query:  160 IPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            +  AI+ +R G+               ++ AA+  T E MA  ++HG+GIVC+ +  E  ++LDLP+MVA   N  +  TAFTVT++A  G TTGVSA DR TT+    + ++KP D NRPGH+FPL+ + GGVL R GHTEAS+DLA LAG+ PA VLCE+ +DDGSMA  P++ EF
Sbjct:   16 VERAIDALRNGRGVMVLDDESRENEGDMVFAAEAMTVEQMALTIRHGSGIVCLCITDERRQQLDLPMMVAN--NSSQFQTAFTVTIEAAKGVTTGVSAADRLTTIRAAIADNAKPTDLNRPGHVFPLRGQPGGVLSRRGHTEASIDLATLAGYKPAGVLCELTNDDGSMAHAPEVIEF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBB_ERWT9 (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=ribB PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.833e-42
Identity = 87/178 (48.88%), Postives = 114/178 (64.04%), Query Frame = 1
Query:  160 IPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            +  AIE +R G+               +I AA+  T E MA  ++HG+GIVC+ +  E LE+LDLP+MV  + N     T FTVT++A  G TTGVSA DR TT+    + D++P D NRPGH+FPL+ R GGVL R GHTEA++DL  LAGF PA VLCE+ +DDGSMA  P++  F
Sbjct:   16 VTHAIEALRAGRGVMVLDDEDRENEGDMIFAAETMTVEQMALTIRHGSGIVCLCLNEERLEQLDLPMMV--QNNTSAYGTGFTVTIEAAEGVTTGVSATDRLTTIRAAIADDARPSDLNRPGHVFPLRARSGGVLTRGGHTEATLDLVTLAGFKPAGVLCELTNDDGSMAHAPEVIVF 191          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_THEPX (Riboflavin biosynthesis protein ribBA OS=Thermoanaerobacter sp. (strain X514) GN=ribBA PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.394e-42
Identity = 94/181 (51.93%), Postives = 120/181 (66.30%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            F  I +AIEDI+QGK               L+MAA+  T E + F++K+G G+VCV M  + L  L +  MV  + N +   TAFTV+VD K   TTG+SA +RA TV  L   +SKP DF +PGHIFPL+ ++GGVL RAGHTEA+VDLAVLAG  PA V+CE++ DDG+MARLP L EF
Sbjct:    2 FDRIEDAIEDIKQGKMIIVVDDENRENEGDLVMAAEKVTGEHINFMIKYGRGLVCVPMTEKRLNELGIYQMV--ENNTDHKETAFTVSVDYKE-CTTGISAFERALTVKKLVDDNSKPEDFTKPGHIFPLRAKDGGVLVRAGHTEAAVDLAVLAGLKPAGVICEIIKDDGNMARLPDLLEF 179          
BLAST of CX295133 vs. ExPASy Swiss-Prot
Match: RIBBA_THEP3 (Riboflavin biosynthesis protein ribBA OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=ribBA PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.394e-42
Identity = 94/181 (51.93%), Postives = 120/181 (66.30%), Query Frame = 1
Query:  151 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREF 693
            F  I +AIEDI+QGK               L+MAA+  T E + F++K+G G+VCV M  + L  L +  MV  + N +   TAFTV+VD K   TTG+SA +RA TV  L   +SKP DF +PGHIFPL+ ++GGVL RAGHTEA+VDLAVLAG  PA V+CE++ DDG+MARLP L EF
Sbjct:    2 FDRIEDAIEDIKQGKMIIVVDDENRENEGDLVMAAEKVTGEHINFMIKYGRGLVCVPMTEKRLNELGIYQMV--ENNTDHKETAFTVSVDYKE-CTTGISAFERALTVKKLVDDNSKPEDFTKPGHIFPLRAKDGGVLVRAGHTEAAVDLAVLAGLKPAGVICEIIKDDGNMARLPDLLEF 179          
The following BLAST results are available for this feature:
BLAST of CX295133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
RIBBA_ARATH7.357e-8473.52Riboflavin biosynthesis protein ribBA, chloroplast... [more]
RIBBA_AQUAE5.507e-4754.10Riboflavin biosynthesis protein ribBA OS=Aquifex a... [more]
RIBBA_SYNWW1.039e-4553.59Riboflavin biosynthesis protein ribBA OS=Syntropho... [more]
RIBB_NEIMA1.356e-4550.563,4-dihydroxy-2-butanone 4-phosphate synthase OS=N... [more]
RIBB_NEIMB2.314e-4550.003,4-dihydroxy-2-butanone 4-phosphate synthase OS=N... [more]
RIBB_PROMH6.301e-4349.443,4-dihydroxy-2-butanone 4-phosphate synthase OS=P... [more]
RIBB_YERE81.833e-4248.313,4-dihydroxy-2-butanone 4-phosphate synthase OS=Y... [more]
RIBB_ERWT91.833e-4248.883,4-dihydroxy-2-butanone 4-phosphate synthase OS=E... [more]
RIBBA_THEPX2.394e-4251.93Riboflavin biosynthesis protein ribBA OS=Thermoana... [more]
RIBBA_THEP32.394e-4251.93Riboflavin biosynthesis protein ribBA OS=Thermoana... [more]

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Properties
Property NameValue
Genbank descriptionC05068H10SK DroRLeaf1 Citrus clementina cDNA clone C05068H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295133 ID=CX295133; Name=CX295133; organism=Citrus clementina; type=EST; length=695bp
GAAAGTACTGGTGCTCATGATCAATTGGAGGGGATTGAGTTACAACCGGA
TGCAATAGCATTTGGAGCACTTGCACCAGATACCGCTCCCACAACTTTTG
GATTTTCCAGTGATGATAGTGAATTTGATTTGGATAGCCCTACAGAAGGT
TTTTCTTCTATCCCCGAGGCCATTGAAGACATTCGCCAAGGAAAGTTTGT
CGTGGTCGTGGATGATGAAGATAGAGAAAATGAGGGAGATCTTATAATGG
CAGCACAGCTCGCAACACCTGAAGCTATGGCATTTATTGTAAAACATGGA
ACTGGAATTGTTTGCGTGAGCATGAAGGGGGAAGATCTGGAGAGGCTGGA
TCTTCCTTTAATGGTTGCACAAAAGGAAAATGATGAGAAACTTTGTACTG
CATTCACAGTGACAGTGGATGCAAAACATGGAACAACCACAGGGGTCTCA
GCTCGTGATAGGGCAACAACTGTTTTGACTCTTGCTTCTAGGGATTCAAA
ACCTGGGGATTTCAATCGCCCGGGCCATATTTTTCCTCTGAAGTACAGAG
AGGGTGGAGTTCTGAAAAGAGCTGGTCATACAGAAGCTTCTGTTGATCTT
GCTGTGCTAGCTGGATTTGACCCTGCAGCAGTTTTGTGTGAGGTTGTGGA
TGATGATGGTTCCATGGCTAGATTACCAAAGCTTCGTGAATTTTG
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