CX295140

Overview
NameCX295140
Unique NameCX295140
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length520
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295140 vs. ExPASy Swiss-Prot
Match: CSLD3_ARATH (Cellulose synthase-like protein D3 OS=Arabidopsis thaliana GN=CSLD3 PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 1.585e-48
Identity = 89/106 (83.96%), Postives = 99/106 (93.40%), Query Frame = 3
Query:   15 IFKWTSLMIPPLTIIMVNLIAIAVAVSRTIYSAEPQWSQLVGGVFFSFWVLAHLYPFAKGLMGRRGKTPTIVFVWSGLLAVCISLLWVAINPPSGTTQIGGSFQFP 332
            I KWTSLMIPP+TI+MVNLIAIAV  SRTIYS  PQWS+L+GGVFFSFWVLAHLYPFAKGLMGRRG+TPTIV+VWSGL+A+ ISLLWVAINPP+G+TQIGGSF FP
Sbjct: 1040 IVKWTSLMIPPITIMMVNLIAIAVGFSRTIYSVIPQWSKLIGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLVAITISLLWVAINPPAGSTQIGGSFTFP 1145          
BLAST of CX295140 vs. ExPASy Swiss-Prot
Match: CSLD2_ARATH (Cellulose synthase-like protein D2 OS=Arabidopsis thaliana GN=CSLD2 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 6.023e-48
Identity = 87/104 (83.65%), Postives = 97/104 (93.27%), Query Frame = 3
Query:   21 KWTSLMIPPLTIIMVNLIAIAVAVSRTIYSAEPQWSQLVGGVFFSFWVLAHLYPFAKGLMGRRGKTPTIVFVWSGLLAVCISLLWVAINPPSGTTQIGGSFQFP 332
            KWTSLMIPP+TIIMVNLIAIAV  SRTIYS  PQWS+L+GGVFFSFWVLAHLYPFAKGLMGRRG+TPTIV+VWSGL+A+ ISLLWVAINPP+G T+IGG+F FP
Sbjct: 1042 KWTSLMIPPITIIMVNLIAIAVGFSRTIYSVVPQWSKLIGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLVAITISLLWVAINPPAGNTEIGGNFSFP 1145          
BLAST of CX295140 vs. ExPASy Swiss-Prot
Match: CSLD2_ORYSJ (Cellulose synthase-like protein D2 OS=Oryza sativa subsp. japonica GN=CSLD2 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 3.904e-47
Identity = 89/106 (83.96%), Postives = 96/106 (90.57%), Query Frame = 3
Query:   15 IFKWTSLMIPPLTIIMVNLIAIAVAVSRTIYSAEPQWSQLVGGVFFSFWVLAHLYPFAKGLMGRRGKTPTIVFVWSGLLAVCISLLWVAINPPSGTTQIGGSFQFP 332
            I KWTSLMIPP+ I+MVNLIAIAV  SRTIYS  PQWS+L+GGVFFSFWVLAHLYPFAKGLMGRRG+TPTIVFVWSGLLA+ ISLLWVAINPPS  +QIGGSF FP
Sbjct: 1065 IVKWTSLMIPPIVIMMVNLIAIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLLAITISLLWVAINPPSQNSQIGGSFTFP 1170          
BLAST of CX295140 vs. ExPASy Swiss-Prot
Match: CSLD2_ORYSI (Cellulose synthase-like protein D2 OS=Oryza sativa subsp. indica GN=CSLD2 PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 3.904e-47
Identity = 89/106 (83.96%), Postives = 96/106 (90.57%), Query Frame = 3
Query:   15 IFKWTSLMIPPLTIIMVNLIAIAVAVSRTIYSAEPQWSQLVGGVFFSFWVLAHLYPFAKGLMGRRGKTPTIVFVWSGLLAVCISLLWVAINPPSGTTQIGGSFQFP 332
            I KWTSLMIPP+ I+MVNLIAIAV  SRTIYS  PQWS+L+GGVFFSFWVLAHLYPFAKGLMGRRG+TPTIVFVWSGLLA+ ISLLWVAINPPS  +QIGGSF FP
Sbjct: 1065 IVKWTSLMIPPIVIMMVNLIAIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLLAITISLLWVAINPPSQNSQIGGSFTFP 1170          
BLAST of CX295140 vs. ExPASy Swiss-Prot
Match: CSLD1_ORYSJ (Cellulose synthase-like protein D1 OS=Oryza sativa subsp. japonica GN=CSLD1 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 6.233e-45
Identity = 84/106 (79.25%), Postives = 95/106 (89.62%), Query Frame = 3
Query:   21 KWTSLMIPPLTIIMVNLIAIAVAVSRTIYSAEPQWSQLVGGVFFSFWVLAHLYPFAKGLMGRRGKTPTIVFVWSGLLAVCISLLWVAINPPS--GTTQIGGSFQFP 332
            KWTSLMIPPLTIIM+NL+AIAV  SRTIYS  PQWS+L+GGVFFSFWVLAHLYPFAKGLMGRRG+TPTIV+VWSGL+A+ ISLLW+AI PPS    +Q+GGSF FP
Sbjct: 1022 KWTSLMIPPLTIIMINLVAIAVGFSRTIYSTIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLVAITISLLWIAIKPPSAQANSQLGGSFSFP 1127          
BLAST of CX295140 vs. ExPASy Swiss-Prot
Match: CSLD1_ORYSI (Cellulose synthase-like protein D1 OS=Oryza sativa subsp. indica GN=CSLD1 PE=2 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 6.233e-45
Identity = 84/106 (79.25%), Postives = 95/106 (89.62%), Query Frame = 3
Query:   21 KWTSLMIPPLTIIMVNLIAIAVAVSRTIYSAEPQWSQLVGGVFFSFWVLAHLYPFAKGLMGRRGKTPTIVFVWSGLLAVCISLLWVAINPPS--GTTQIGGSFQFP 332
            KWTSLMIPPLTIIM+NL+AIAV  SRTIYS  PQWS+L+GGVFFSFWVLAHLYPFAKGLMGRRG+TPTIV+VWSGL+A+ ISLLW+AI PPS    +Q+GGSF FP
Sbjct: 1022 KWTSLMIPPLTIIMINLVAIAVGFSRTIYSTIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLVAITISLLWIAIKPPSAQANSQLGGSFSFP 1127          
BLAST of CX295140 vs. ExPASy Swiss-Prot
Match: CSLD4_ARATH (Cellulose synthase-like protein D4 OS=Arabidopsis thaliana GN=CSLD4 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 3.201e-41
Identity = 80/111 (72.07%), Postives = 89/111 (80.18%), Query Frame = 3
Query:   15 IFKWTSLMIPPLTIIMVNLIAIAVAVSRTIYSAEPQWSQLVGGVFFSFWVLAHLYPFAKGLMGRRGKTPTIVFVWSGLLAVCISLLWVAINPPSGTTQI-----GGSFQFP 332
            I KW+SLMIPP+ I MVN+IAI VA  RTIY A PQWS+L+GG FFSFWVLAHLYPFAKGLMGRRGKTPTIVFVW+GL+A+ ISLLW AINP +G         GG FQFP
Sbjct: 1001 IVKWSSLMIPPIVIAMVNIIAIVVAFIRTIYQAVPQWSKLIGGAFFSFWVLAHLYPFAKGLMGRRGKTPTIVFVWAGLIAITISLLWTAINPNTGPAAAAEGVGGGGFQFP 1111          
BLAST of CX295140 vs. ExPASy Swiss-Prot
Match: CSLD5_ARATH (Cellulose synthase-like protein D5 OS=Arabidopsis thaliana GN=CSLD5 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 9.314e-41
Identity = 78/106 (73.58%), Postives = 91/106 (85.85%), Query Frame = 3
Query:   15 IFKWTSLMIPPLTIIMVNLIAIAVAVSRTIYSAEPQWSQLVGGVFFSFWVLAHLYPFAKGLMGRRGKTPTIVFVWSGLLAVCISLLWVAINPPSGTTQIGGSFQFP 332
            + KW+ LM+PPLTI+MVN+IAIAV ++RT+YS  PQWS+LVGGVFFSFWVL HLYPFAKGLMGRRG+ PTIVFVWSGLL++ +SLLWV INPPSG  Q    FQFP
Sbjct: 1077 VVKWSFLMVPPLTIMMVNMIAIAVGLARTLYSPFPQWSKLVGGVFFSFWVLCHLYPFAKGLMGRRGRVPTIVFVWSGLLSIIVSLLWVYINPPSG-KQDYMQFQFP 1181          
BLAST of CX295140 vs. ExPASy Swiss-Prot
Match: CSLD3_ORYSJ (Cellulose synthase-like protein D3 OS=Oryza sativa subsp. japonica GN=CSLD3 PE=2 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 3.913e-39
Identity = 76/109 (69.72%), Postives = 89/109 (81.65%), Query Frame = 3
Query:   15 IFKWTSLMIPPLTIIMVNLIAIAVAVSRTIYSAEPQWSQLVGGVFFSFWVLAHLYPFAKGLMGRRGKTPTIVFVWSGLLAVCISLLWVAINPPSGTTQ---IGGSFQFP 332
            I KW+SL+IPP+TI MVN+IAIA A +RTIYS  P+W + +GG FFSFWVLAHL PFAKGLMGRRGKTPTIVFVWSGLL++ +SLLWVAI+PP   +     GG FQFP
Sbjct: 1039 IVKWSSLLIPPITIGMVNIIAIAFAFARTIYSDNPRWGKFIGGGFFSFWVLAHLNPFAKGLMGRRGKTPTIVFVWSGLLSITVSLLWVAISPPEANSNGGARGGGFQFP 1147          
BLAST of CX295140 vs. ExPASy Swiss-Prot
Match: CSLD4_ORYSJ (Cellulose synthase-like protein D4 OS=Oryza sativa subsp. japonica GN=CSLD4 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 6.675e-39
Identity = 72/106 (67.92%), Postives = 89/106 (83.96%), Query Frame = 3
Query:   21 KWTSLMIPPLTIIMVNLIAIAVAVSRTIYSAEPQWSQLVGGVFFSFWVLAHLYPFAKGLMGRRGKTPTIVFVWSGLLAVCISLLWVAINPPSGTTQI--GGSFQFP 332
            +W+ LM+PP+TI+MVN +AIAVA +RT+YS  PQWS+L+GG FFSFWVL HLYPFAKGL+GRRG+ PTIVFVWSGL+++ ISLLWV INPP+G  +   GG F FP
Sbjct: 1110 RWSYLMVPPVTIMMVNAVAIAVAAARTLYSEFPQWSKLLGGAFFSFWVLCHLYPFAKGLLGRRGRVPTIVFVWSGLISMIISLLWVYINPPAGARERIGGGGFSFP 1215          
The following BLAST results are available for this feature:
BLAST of CX295140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
CSLD3_ARATH1.585e-4883.96Cellulose synthase-like protein D3 OS=Arabidopsis ... [more]
CSLD2_ARATH6.023e-4883.65Cellulose synthase-like protein D2 OS=Arabidopsis ... [more]
CSLD2_ORYSJ3.904e-4783.96Cellulose synthase-like protein D2 OS=Oryza sativa... [more]
CSLD2_ORYSI3.904e-4783.96Cellulose synthase-like protein D2 OS=Oryza sativa... [more]
CSLD1_ORYSJ6.233e-4579.25Cellulose synthase-like protein D1 OS=Oryza sativa... [more]
CSLD1_ORYSI6.233e-4579.25Cellulose synthase-like protein D1 OS=Oryza sativa... [more]
CSLD4_ARATH3.201e-4172.07Cellulose synthase-like protein D4 OS=Arabidopsis ... [more]
CSLD5_ARATH9.314e-4173.58Cellulose synthase-like protein D5 OS=Arabidopsis ... [more]
CSLD3_ORYSJ3.913e-3969.72Cellulose synthase-like protein D3 OS=Oryza sativa... [more]
CSLD4_ORYSJ6.675e-3967.92Cellulose synthase-like protein D4 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionC05069A05SK PhIFruit1 Citrus clementina cDNA clone C05069A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295140 ID=CX295140; Name=CX295140; organism=Citrus clementina; type=EST; length=520bp
GAGGCCTCGTGCCGATTTTCAAGTGGACTTCCCTGATGATACCACCACTT
ACCATCATAATGGTTAACTTGATTGCAATAGCAGTCGCGGTTAGCCGAAC
AATATACAGTGCCGAACCTCAATGGAGCCAGTTGGTAGGAGGAGTGTTCT
TTAGCTTCTGGGTTCTGGCTCATCTGTATCCATTTGCAAAGGGACTAATG
GGAAGACGAGGCAAGACGCCTACTATTGTATTCGTTTGGTCAGGGCTTCT
TGCAGTCTGCATTTCCTTACTTTGGGTGGCTATTAATCCTCCATCAGGAA
CTACACAAATTGGAGGATCATTTCAGTTTCCATGAGTTCTGAGTTTCAGA
TGTTATTTCGTTCGGCGTCTGGCAGGTATAGACGGGAATTTTTTCTTCTC
AGTTTCACTTTTGTCTATTGTAACTGAGGCATTTATGTACATGAAATCCA
TTCTTTTCAATTTTACTGCAGATGTGACCTTAGAAATCAAATAGAGCAAT
ATACCGATTTGTTTGATTCA
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