CX295142

Overview
NameCX295142
Unique NameCX295142
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig621 contig Ccv1_Contig621:3..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295142 vs. ExPASy Swiss-Prot
Match: FDL37_ARATH (F-box/FBD/LRR-repeat protein At5g53840 OS=Arabidopsis thaliana GN=At5g53840 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.501e-12
Identity = 57/196 (29.08%), Postives = 89/196 (45.41%), Query Frame = 1
Query:  136 EDWFSKFPDDILVNLISRLTLKEAARTSVLSSRWKYLWNFTTALDFAGIGKDIIFPSKEEK--SEYVCWVNKILSLHKGSNINKFRIRCTLDNSHGRDITNWIYTATAKKVQNFELDFWPPSHINDYAFPLERYNFLKRGH-----------GLSGIKSLRSLCLNALKVSGE-VLEFFIHSCPHLEHLYVANSSE 681
            E+  S+ PD ++  ++S L+ K+A RTS+LS+RW+ LW     LD         F S+E +  SE+V +      LHK S I K R+ C  D +    +T+WI   T  ++Q+ ++  +  S       PL  Y      H               +  L+ L L+ +  + E  L+  I   P LE L +  SSE
Sbjct:   17 EERLSQLPDHLICVILSHLSTKDAVRTSILSTRWRNLWQLVPVLD---------FDSRELRSFSEFVSFAGSFFYLHKDSYIQKLRV-CIYDLAGNYYLTSWIDLVTRHRIQHIDISVFTCSGFG--VIPLSLYTCDTLVHLKLSRVTMVNVEFVSLPCLKILDLDFVNFTNETTLDKIISCSPVLEELTIVKSSE 200          
BLAST of CX295142 vs. ExPASy Swiss-Prot
Match: FDL1_ARATH (F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.501e-12
Identity = 55/198 (27.78%), Postives = 95/198 (47.98%), Query Frame = 1
Query:  139 DWFSKFPDDILVNLISRLTLKEAARTSVLSSRWKYLWNFTTALDFAGIGKDIIFPSKEE---KSEYVCWVNKILSLHKGSNINKFRIRCTLDNSHGRDITNWIYTATAKKVQNFELDFWPPSHINDYAFPLERYNFLK------------RGHGLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELL 687
            D+ S  P  I+ N+++RL++++A RTSVLSS+W+Y W+  T L F    +  + PS +    ++  V ++  +L LH+G  I+KF++  +       DI  W+   +   ++   L         ++  P   +N LK                  G   L+SL L+ + V+ EV+E  I  CP LE L ++    L+
Sbjct:    6 DFISDLPQSIIENILTRLSIRDAIRTSVLSSKWRYKWSTLTDLVF---DEKCVSPSNDRCVVETNLVRFITGVLLLHQGP-IHKFQLSTSFKQCR-PDIDQWLLFLSRNGIKELVLKLGE----GEFRVPACLFNCLKLTCLELCHCEFDPPQYFKGFSYLKSLNLHQILVAPEVIESLISGCPLLEFLSLSYFDSLV 194          
BLAST of CX295142 vs. ExPASy Swiss-Prot
Match: FBL56_ARATH (Putative F-box/LRR-repeat protein At3g58880 OS=Arabidopsis thaliana GN=At3g58880 PE=4 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.343e-12
Identity = 63/200 (31.50%), Postives = 95/200 (47.50%), Query Frame = 1
Query:  133 MEDWFSKFPDDILVNLISRLTLKEAARTSVLSSRWKYLWNFTTALDFAGIGKDIIFPSKEE--------KSEYVCWVNKILSLHKGSNINKFRIRCTLDNSHGRDITN-WIYTATAKKVQNFELDFWPPSHINDYAFPLERYNF-LKRGHG---------LSGIKSLRSLCLNALKVSGE-VLEFFIHSCPHLEHLYVAN 672
            M D  S  PDD+L +++S LT KEAA TS+LS RW+YL  F   L+F     D  F + EE        +  ++ +V+++L+LH  S I KF ++C        D+ N WI     + V   +L              + R    LK G G         +S +  L++L L+++  S    LE  + +CP LE L +AN
Sbjct:    1 MVDLVSSLPDDLLGHILSLLTTKEAALTSILSKRWRYLIAFVPYLEF----DDSAFLNPEEGKQTREGTRQSFIDFVDRVLALHGDSPIRKFSLKC--KTGVDLDLLNQWICNVLQRGVLLIDLSMDLGHRCMFIEIFMSRTLVELKLGSGCRIAFGPEHISALPMLKTLTLDSVSWSDSGQLERLLSACPALEALNLAN 194          
BLAST of CX295142 vs. ExPASy Swiss-Prot
Match: FB207_ARATH (Putative F-box protein At3g58860 OS=Arabidopsis thaliana GN=At3g58860 PE=4 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.343e-12
Identity = 58/199 (29.15%), Postives = 95/199 (47.74%), Query Frame = 1
Query:  139 DWFSKFPDDILVNLISRLTLKEAARTSVLSSRWKYLWNFTTALDFAGIGKDIIFP--SKEEKS----EYVCWVNKILSLHKGSNINKFRIRCTLDNSHGRDITNWIYTATAKKVQNFEL--DFWPPSHINDYAFPLE-----RYNFLKRGHGLS--------GIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVAN 672
            D FSK PD+++ +++S L  KEAA TSVL+ +W+YL+ F  +LDF     D + P   K EK      ++ +V+++L+L   S I KF +         R +  WI     + V +  L  DF       +Y+ P E         LK G+G+          +  L++L L +++      +  + +CP LE L + N
Sbjct:    7 DLFSKLPDEVISHILSSLPTKEAASTSVLAKKWRYLFAFVPSLDFN--DSDFLHPQEGKREKDGILRSFMDFVDRVLALQGASPIKKFSLNVKTGVDPDR-VDRWICNVLQRGVSHLALFMDF-----EEEYSLPYEISVSKTLVELKTGYGVDLYLWDDDMFLPMLKTLVLESVEFGRGQFQTLLPACPVLEELMLLN 197          
BLAST of CX295142 vs. ExPASy Swiss-Prot
Match: FBL65_ARATH (F-box/LRR-repeat protein At3g59210 OS=Arabidopsis thaliana GN=At3g59210 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.367e-12
Identity = 56/198 (28.28%), Postives = 92/198 (46.46%), Query Frame = 1
Query:  136 EDWFSKFPDDILVNLISRLTLKEAARTSVLSSRWKYLWNFTTALDF---AGIGKDIIFPSKEEKSEYVCWVNKILSLHKGSNINKFRIRCTLDNSHGRDITNWIYTATAKKVQNFELD------FWPPSHINDYAFPLERYNFLKRGHGLSGIKSLRSLCLNALKV---------SGEV-LEFFIHSCPHLEHLYVAN 672
            +D  +  PD++L  ++S L+ KEAA TS+LS RW+YL+     LDF     +  ++    +++ S ++ +V+++L L    +INKF ++C  D     D+  WI       V +  L       +W PS +    F  +    LK G        LR++CL  LK           G++     +  CP LE L + N
Sbjct:    6 KDIINCLPDNLLCQILSNLSTKEAALTSLLSKRWRYLFALVPNLDFDVLPSLHPEVAMQDQDQTS-FIDFVDRVLKLRGKDHINKFSLKCG-DGIEDEDVFPWILNTLRHGVSDLSLHVSPSLVYWLPSKV----FASKTLVRLKIGPKDGPRVKLRNVCLPKLKTLNLDSVVFEEGKIGFAKLLSGCPVLEELSLLN 197          
BLAST of CX295142 vs. ExPASy Swiss-Prot
Match: FBL82_ARATH (F-box/LRR-repeat protein At5g22700 OS=Arabidopsis thaliana GN=At5g22700 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.448e-12
Identity = 50/196 (25.51%), Postives = 91/196 (46.43%), Query Frame = 1
Query:  130 NMEDWFSKFPDDILVNLISRLTLKEAARTSVLSSRWKYLWNFTTALDFAGIGKDIIFPSKEEKSEYVCWVNKILSLHKGSNINKFRIRCTLDNSHGRDITNWIYTATAKKVQNFELD---------FWPPSHINDYAFPLERYNFLKRGHGLSGIKSLRSLCLNA-LKVSGEVLEFFIHSCPHLEHLYVANSSELL 687
            N  D  S  PD++L  ++S L  K A  TS+LS+RW+ +W  T  L       DI   + ++ + +V + ++ L   K S ++KF++    D+     I  WI  A  +++Q+ E+D          +   ++++    L  +      +    + +L+ + L   +    E LE FI SCP LE L V    +++
Sbjct:    3 NRGDRISSLPDELLCQILSNLPTKNAVTTSILSTRWRSIWLSTPVL-------DIDIDAFDDATTFVSFASRFLEFSKDSCLHKFKLSVERDDVDMCTIMPWIQDAVNRRIQHLEVDCRFSFHFEAVYLTLYLSETLVSLRLHFVTLHRYEFVSLPNLKVMHLEENIYYCLETLENFISSCPVLEDLTVVRIVDII 191          
BLAST of CX295142 vs. ExPASy Swiss-Prot
Match: FB93_ARATH (F-box protein At1g80960 OS=Arabidopsis thaliana GN=At1g80960 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.271e-11
Identity = 60/209 (28.71%), Postives = 100/209 (47.85%), Query Frame = 1
Query:   97 LTPADTPEKKENMEDWFSKFPDDILVNLISRLTLKEAARTSVLSSRWKYLWNFTTALDFAGIGKDIIFPSK--EEKSEYVCWVNKILSLHKGSNINKFRIRCTLDNSHGRDITNWI-----------------YTATAKKVQNFELDFWPPSHINDYAFPLERYNFLKRGHGLSGIKSLRSLCLNALKVSGEVLEF--FIHSCPHLEHL 660
            +T +D    K    DW SK PDD+L+ ++SRL+ +EA RTSV+S RW+++WN  + L F  + K+II  +   +  +     + ++++ H+G   +   I       +G  + +WI                 Y    +K + F       SH +  +  L  Y FL+  H L    +LR+L L ++ V+ E+  F   + SCP LE L
Sbjct:   97 ITVSDDHSVKVKNVDWISKLPDDVLLIILSRLSTEEAIRTSVVSKRWEHVWNQMSHLVF-DMRKNIINSNNTLDGSNPVATLITQVINNHRGHLESCVIIHVPYQGGNGM-LNSWIRLLSCVKRTKVLTLRYHYGTWDRKFKTFNFSPDSLSHPSLMSLSLHSY-FLESSHPLRNCSNLRTLKLLSI-VAPEIGVFNRVLASCPCLEVL 301          
BLAST of CX295142 vs. ExPASy Swiss-Prot
Match: FB268_ARATH (Putative F-box protein At5g38390 OS=Arabidopsis thaliana GN=At5g38390 PE=4 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.167e-11
Identity = 58/189 (30.69%), Postives = 89/189 (47.09%), Query Frame = 1
Query:  139 DWFSKFPDDILVNLISRLTLKEAARTSVLSSRWKYLWNFTTALDFAGIGKDIIFPSKEEKSEYVCWVNKILSLHKGSNINKFRIRCTLDNSHGRDITNWIYTATAKKVQNFELDFWPPSHIND--YAFP--LERYNFLKRG-------HGLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVAN 672
            D  S  P ++L +++S LT KEAA TSVLS RW+ L  F   +D   +  DI       +  ++ +V+++L+L   S INKF + C+  +S   D   WI     + V    L  +  S   D    FP   E    +K G        G   +  L++L L ++ +S E  E  +H+ P LE L + N
Sbjct:    2 DLLSNLPYELLCHILSFLTTKEAALTSVLSKRWRNLIAFVPNVDI--VDHDI-------RELFMDFVDRVLALQGNSPINKFSLDCSGVDSDRVDC--WIQNVMVRGVSELNLSIFVDSVFEDDYNLFPKVFENKKLVKLGLSYISWLDGSIFLPMLKTLVLESVLLSVEKFEILLHALPALEELVMNN 179          
BLAST of CX295142 vs. ExPASy Swiss-Prot
Match: FBD18_ARATH (FBD-associated F-box protein At5g44490 OS=Arabidopsis thaliana GN=At5g44490 PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 3.697e-11
Identity = 57/195 (29.23%), Postives = 87/195 (44.62%), Query Frame = 1
Query:  136 EDWFSKFPDDILVNLISRLTLKEAARTSVLSSRWKYLWNFTTALDFAGIGKDIIFPSKEEKSEYVCWVNKILSLHKGSNINKFRIRCTLDNSHGRD----ITNWIYTATAKKVQNFELD--FWPPSHINDYAFPLERY----NFLKRGHG--LSGIKSLRSLCLNALKVSGEV------LEFFIHSCPHLEHLYV 666
            ED  SK  D ++  ++  L  KEA  TSVLSSRWK +W     LD         FPS    + +V +++K +   K  N    +++ ++   H  D    +T WI      K+++ +++   W    +     PL  Y     F  R H   L  ++S+   CL  + +   V      LEFFI SCP LE L +
Sbjct:   16 EDLMSKLTDALISQVLFYLPTKEAVSTSVLSSRWKSVWLLIPDLDL----NSSAFPS---NNAFVGFIDKFIDFSKIENSCLHKLKLSIRKEHENDNKSCVTRWIGFVATHKLKHLDVECLLWKKKCLE--VMPLTLYITQTLFYLRLHRVLLGNVESISLPCLKTMHLEQNVYANETCLEFFISSCPVLEDLSI 201          
BLAST of CX295142 vs. ExPASy Swiss-Prot
Match: FDL8_ARATH (Putative F-box/FBD/LRR-repeat protein At1g66300 OS=Arabidopsis thaliana GN=At1g66300 PE=4 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 53/219 (24.20%), Postives = 102/219 (46.58%), Query Frame = 1
Query:   73 EQMTKRARLTPADTPEKKENME-DWFSKFPDDILVNLISRLTLKEAARTSVLSSRWKYLWNFTTALDFAGIGKDIIFPSKEEKSEYVCWVNKILSLHKGSNINKFRI--RCTL---DNSHGRDITNWIYTATAKKVQNFELDFWPPSHINDYAFPLERYNFLKRGHGLSGI----------KSLRSLCLNALKVSGEV-LEFFIHSCPHLEHLYVANSS 678
            E+  +  RL   ++ +KK   E DW    P+ ++ +++  L+ K+  +  VLS++W+YLW +         G D+      E + +V +V++ LS +  S +NKF++   C L   + +    +  WI     +KVQ+ +L+ W    I    +  +    LK    L G+           S++ + L+ +K + ++ LE  I  C  L+ L +  S+
Sbjct:    6 EKRVRTKRLCSPESSDKKSGYEVDWVRDLPESLICHVLLNLSTKDVIKNCVLSTKWRYLWRYVP-------GLDLDCSDFTEYNTFVSFVDRFLSTNTESYLNKFKLGFDCDLVGDEETGNAQMARWINDVVKRKVQHLDLE-WGALEIPPIVYVCKSLVSLK----LCGVILPIPEFVCLPSVKVIVLDWVKFANDLALEMLISGCLVLKSLTLCRSN 212          
The following BLAST results are available for this feature:
BLAST of CX295142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
FDL37_ARATH1.501e-1229.08F-box/FBD/LRR-repeat protein At5g53840 OS=Arabidop... [more]
FDL1_ARATH1.501e-1227.78F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidop... [more]
FBL56_ARATH3.343e-1231.50Putative F-box/LRR-repeat protein At3g58880 OS=Ara... [more]
FB207_ARATH3.343e-1229.15Putative F-box protein At3g58860 OS=Arabidopsis th... [more]
FBL65_ARATH4.367e-1228.28F-box/LRR-repeat protein At3g59210 OS=Arabidopsis ... [more]
FBL82_ARATH7.448e-1225.51F-box/LRR-repeat protein At5g22700 OS=Arabidopsis ... [more]
FB93_ARATH1.271e-1128.71F-box protein At1g80960 OS=Arabidopsis thaliana GN... [more]
FB268_ARATH2.167e-1130.69Putative F-box protein At5g38390 OS=Arabidopsis th... [more]
FBD18_ARATH3.697e-1129.23FBD-associated F-box protein At5g44490 OS=Arabidop... [more]
FDL8_ARATH8.235e-1124.20Putative F-box/FBD/LRR-repeat protein At1g66300 OS... [more]

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Properties
Property NameValue
Genbank descriptionC05069A07SK PhIFruit1 Citrus clementina cDNA clone C05069A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295142 ID=CX295142; Name=CX295142; organism=Citrus clementina; type=EST; length=692bp
CGAATGATTCGAATCAGCTAAAAGGGCAACAGTTACCGTAGAGTCAAAAT
CCGCTGAAAGCTTTTGCACGCAGAGCAAATGACTAAGAGAGCCCGGCTGA
CACCTGCAGATACCCCAGAAAAGAAGGAAAATATGGAGGATTGGTTCAGT
AAATTCCCAGATGATATTCTTGTTAATCTTATATCTCGTTTAACACTTAA
AGAAGCTGCAAGGACTAGCGTCCTTTCAAGTAGATGGAAATACTTGTGGA
ATTTTACCACTGCTCTCGACTTTGCTGGAATAGGAAAGGATATAATATTC
CCAAGTAAAGAAGAAAAAAGTGAGTACGTTTGCTGGGTGAATAAAATTTT
GAGCTTGCATAAAGGTTCAAATATAAATAAGTTTCGAATACGTTGTACTC
TGGATAATTCACACGGAAGGGACATCACCAATTGGATTTACACAGCAACA
GCAAAGAAAGTTCAAAACTTTGAGTTGGATTTTTGGCCACCATCTCATAT
TAATGATTATGCATTTCCGCTAGAGCGGTACAACTTCCTTAAAAGAGGGC
ATGGTTTGTCTGGCATTAAGTCACTAAGATCCCTCTGCCTTAATGCTCTG
AAAGTCAGTGGAGAAGTGCTTGAGTTTTTTATACACAGTTGTCCACATTT
GGAACACTTATACGTGGCCAATTCTTCAGAGTTATTAGCTTG
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