CX295144

Overview
NameCX295144
Unique NameCX295144
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length539
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig617 contig Ccv1_Contig617:1..539. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX295144 vs. ExPASy Swiss-Prot
Match: QCR9_SOLTU (Cytochrome b-c1 complex subunit 9 OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.600e-23
Identity = 49/72 (68.06%), Postives = 58/72 (80.56%), Query Frame = -3 
Query:  196 MEYTTKRSQGGLLEGLYRVIMRRNSIYVTFIIAGAFAGERAVDYGVRKIWEHNNVGKRYEDIPVLGQRQSEE 411
            ME   +RS GG+LEG YR++MRR  +YVTF+IAGA  GERAVDYGV+ +WE NNVGKRYEDI VLGQR  +E
Sbjct:    1 MESAARRSGGGVLEGFYRLVMRRTPVYVTFVIAGALLGERAVDYGVKTLWEKNNVGKRYEDISVLGQRPVDE 72
The following BLAST results are available for this feature:
BLAST of CX295144 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
QCR9_SOLTU5.600e-2368.06Cytochrome b-c1 complex subunit 9 OS=Solanum tuber... [more]
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Properties
Property NameValue
Genbank descriptionC05069A09SK PhIFruit1 Citrus clementina cDNA clone C05069A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295144 ID=CX295144; Name=CX295144; organism=Citrus clementina; type=EST; length=539bp
GAGGCCTCGTGCCGAATTCGGCACGAGGTTTTTTTTTACTCCAAAACCTA
TTTGATTGAAACCAAGCTTGAAAAACACGTCTGATGCACTCAAGCATACA
AAAAATTTATTGCAACATAAAACAGCTATCCATTACATTGGACGCCCCTT
TCAAATTTTTTATATAAAACTTCAGAATGAACAGGAGAGGTACTACTCTT
CTGATTGCCTTTGCCCCAAAACTGGAATGTCTTCATATCGTTTCCCAACA
TTGTTGTGCTCCCAGATTTTGCGAACCCCATAATCCACAGCCCGTTCACC
AGCGAAAGCGCCGGCGATGATGAAGGTTACGTAGATGGAGTTGCGGCGCA
TGATGACTCTGTAAAGACCTTCGAGGAGGCCTCCTTGGCTTCGTTTGGTT
GTATACTCCATGGCTGTTCGTTCAGGAATTCGATTCGCTCTGATTGATCT
GCAATACAGTGATTGATTTAGGGTTCGCAGAGCCTCGTGCCGAATTCGGC
ACGAGGCCTCGTGCCGAATTCGGCACGAGGGAGAACTAG
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