CX295148

Overview
NameCX295148
Unique NameCX295148
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7970 contig Ccv1_Contig7970:8..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295148 vs. ExPASy Swiss-Prot
Match: MPPA_SOLTU (Mitochondrial-processing peptidase subunit alpha OS=Solanum tuberosum GN=MPP PE=1 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.389e-77
Identity = 140/217 (64.52%), Postives = 173/217 (79.72%), Query Frame = 1
Query:   58 MYRATVSRLGSLKGRLGNFQAMRYATSGAAAVRPSSPGFFSWLTGEQSSSLPSLDTPLEGVSFPPSLPDFVEPGEVKVTTLENGIRIASETSVSPAASIGLYLDCGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHS 708
            MYR   SRL SLK R GN    R+++S A A +PS  G FSW+TG+ SSS+  LD PL  V   P LPD+VEP + ++TTL NG+++ASE SV+PAASIGLY+DCGS+YETP+S GA++LLE+MAFKST NRSHLRIVRE+EAIGG++ ASASRE M Y++DALKTYVP+MVE+L DCVRNP FLDWEV E+L K+K+E+ E   NPQ LLLEA+HS
Sbjct:    1 MYRCASSRLSSLKARQGNRVLTRFSSSAAVATKPSG-GLFSWITGDTSSSVTPLDFPLNDVKLSPPLPDYVEPAKTQITTLANGLKVASEASVNPAASIGLYVDCGSIYETPASYGATHLLERMAFKSTLNRSHLRIVREIEAIGGNVTASASREHMIYTYDALKTYVPQMVEMLADCVRNPAFLDWEVKEQLEKVKAEISEYSKNPQHLLLEAVHS 216          
BLAST of CX295148 vs. ExPASy Swiss-Prot
Match: MPPA2_ARATH (Probable mitochondrial-processing peptidase subunit alpha-2 OS=Arabidopsis thaliana GN=At3g16480 PE=1 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 1.712e-75
Identity = 145/218 (66.51%), Postives = 170/218 (77.98%), Query Frame = 1
Query:   58 MYRATVSRLGSLKGRLG-NFQAMRYATSGAAAVRPSSPGFFSWLTGEQSSSLPSLDTPLEGVSFPPSLPDFVEPGEVKVTTLENGIRIASETSVSPAASIGLYLDCGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHS 708
            MYR   SR  +LKG L  NF+A RYA+S A A   SS    SWL+G  SSSLPS++ PL GVS PP L D VEP ++K TTL NG+ IA+E S +PAASIGLY+DCGS+YETP   GA++LLE+MAFKST NRSH R+VRE+EAIGG+  ASASREQMGY+ DALKTYVPEMVE+L+D VRNP FLDWEVNEELRK+K E+GE   NP G LLEA+HS
Sbjct:    1 MYRTAASRAKALKGILNHNFRASRYASSSAVATSSSSS---SWLSGGYSSSLPSMNIPLAGVSLPPPLSDHVEPSKLKTTTLPNGLTIATEMSPNPAASIGLYVDCGSIYETPQFRGATHLLERMAFKSTLNRSHFRLVREIEAIGGNTSASASREQMGYTIDALKTYVPEMVEVLIDSVRNPAFLDWEVNEELRKVKVEIGEFATNPMGFLLEAVHS 215          
BLAST of CX295148 vs. ExPASy Swiss-Prot
Match: MPPA1_ARATH (Probable mitochondrial-processing peptidase subunit alpha-1 OS=Arabidopsis thaliana GN=At1g51980 PE=1 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.357e-72
Identity = 139/219 (63.47%), Postives = 170/219 (77.63%), Query Frame = 1
Query:   58 MYRATVSRLGSLKGRLG-NFQAMRYATSGAAAVRPSS-PGFFSWLTGEQSSSLPSLDTPLEGVSFPPSLPDFVEPGEVKVTTLENGIRIASETSVSPAASIGLYLDCGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHS 708
            MYR   SR  +LKG L  + +  RYA+S A A   SS P + SWL+G   ++L SLD PL+GVS PP L D VEP ++++TTL NG++IASET+ +PAASIGLY+DCGS+YE P   GA++LLE+MAFKST NR+H R+VRE+EAIGG+  ASASREQM Y+ DALKTYVPEMVE+L+D VRNP FLDWEVNEELRK+K E+ EL  NP G LLEAIHS
Sbjct:    1 MYRTAASRARALKGVLTRSLRPARYASSSAVAETSSSTPAYLSWLSGGSRAALTSLDMPLQGVSLPPPLADKVEPSKLQITTLPNGLKIASETTPNPAASIGLYVDCGSIYEAPYFHGATHLLERMAFKSTLNRTHFRLVREIEAIGGNTSASASREQMSYTIDALKTYVPEMVEVLIDSVRNPAFLDWEVNEELRKMKVEIAELAKNPMGFLLEAIHS 219          
BLAST of CX295148 vs. ExPASy Swiss-Prot
Match: QCR1_RAT (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Rattus norvegicus GN=Uqcrc1 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.424e-21
Identity = 54/143 (37.76%), Postives = 87/143 (60.84%), Query Frame = 1
Query:  280 EVKVTTLENGIRIASETSVSPAASIGLYLDCGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHS 708
            E +V+ L+NG+R+ASE S  P  ++G+++D GS YET  + GA   LE +AFK TKNR    + +EVE+IG  + A ++RE   Y   AL   +P++VELL D V+N    D ++ +E   +  E+ E   + Q ++ + +H+
Sbjct:   47 ETQVSVLDNGLRVASEQSSHPTCTVGVWIDVGSRYETEKNNGAGYFLEHLAFKGTKNRPGNALEKEVESIGAHLNAYSTREHTAYLIKALSKDLPKVVELLADIVQNISLEDSQIEKERDVILREMQENDASMQNVVFDYLHA 189          
BLAST of CX295148 vs. ExPASy Swiss-Prot
Match: MPPB_RAT (Mitochondrial-processing peptidase subunit beta OS=Rattus norvegicus GN=Pmpcb PE=1 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 3.172e-21
Identity = 54/143 (37.76%), Postives = 82/143 (57.34%), Query Frame = 1
Query:  280 EVKVTTLENGIRIASETSVSPAASIGLYLDCGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHS 708
            E +VT LENG+R+ASE S     ++GL++D GS YE   + G ++ LE MAFK TK RS L +  E+E +G  + A  SREQ  Y   A    +P  VE+L D ++N    + E+  E   +  E+ E+  N Q ++ + +H+
Sbjct:   57 ETQVTCLENGLRVASENSGISTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQEVVFDYLHA 199          
BLAST of CX295148 vs. ExPASy Swiss-Prot
Match: MPPB_MOUSE (Mitochondrial-processing peptidase subunit beta OS=Mus musculus GN=Pmpcb PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.172e-21
Identity = 54/143 (37.76%), Postives = 82/143 (57.34%), Query Frame = 1
Query:  280 EVKVTTLENGIRIASETSVSPAASIGLYLDCGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHS 708
            E +VT LENG+R+ASE S     ++GL++D GS YE   + G ++ LE MAFK TK RS L +  E+E +G  + A  SREQ  Y   A    +P  VE+L D ++N    + E+  E   +  E+ E+  N Q ++ + +H+
Sbjct:   57 ETQVTCLENGLRVASENSGLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSRDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQEVVFDYLHA 199          
BLAST of CX295148 vs. ExPASy Swiss-Prot
Match: MPPB_BOVIN (Mitochondrial-processing peptidase subunit beta OS=Bos taurus GN=PMPCB PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.172e-21
Identity = 54/143 (37.76%), Postives = 82/143 (57.34%), Query Frame = 1
Query:  280 EVKVTTLENGIRIASETSVSPAASIGLYLDCGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHS 708
            E +VT LENG+R+ASE S     ++GL++D GS YE   + G ++ LE MAFK TK RS L +  E+E +G  + A  SREQ  Y   A    +P  VE+L D ++N    + E+  E   +  E+ E+  N Q ++ + +H+
Sbjct:   58 ETRVTCLENGLRVASEDSGLATCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQEVVFDYLHA 200          
BLAST of CX295148 vs. ExPASy Swiss-Prot
Match: QCR1_MOUSE (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Mus musculus GN=Uqcrc1 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.066e-21
Identity = 53/143 (37.06%), Postives = 86/143 (60.14%), Query Frame = 1
Query:  280 EVKVTTLENGIRIASETSVSPAASIGLYLDCGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHS 708
            E +V+ L+NG+R+ASE S     ++G+++D GS YET  + GA   LE +AFK TKNR    + +EVE+IG  + A ++RE   Y   AL   +P++VELL D V+N    D ++ +E   +  E+ E   + Q ++ + +H+
Sbjct:   47 ETQVSILDNGLRVASEQSSHATCTVGVWIDAGSRYETEKNNGAGYFLEHLAFKGTKNRPGNALEKEVESIGAHLNAYSTREHTAYLIKALSKDLPKVVELLADIVQNSSLEDSQIEKERDVILREMQENDASMQNVVFDYLHA 189          
BLAST of CX295148 vs. ExPASy Swiss-Prot
Match: MPPB_PONAB (Mitochondrial-processing peptidase subunit beta OS=Pongo abelii GN=PMPCB PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.205e-20
Identity = 53/143 (37.06%), Postives = 82/143 (57.34%), Query Frame = 1
Query:  280 EVKVTTLENGIRIASETSVSPAASIGLYLDCGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHS 708
            E +VT LE+G+R+ASE S     ++GL++D GS YE   + G ++ LE MAFK TK RS L +  E+E +G  + A  SREQ  Y   A    +P  VE+L D ++N    + E+  E   +  E+ E+  N Q ++ + +H+
Sbjct:   57 ETRVTCLESGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQEVVFDYLHA 199          
BLAST of CX295148 vs. ExPASy Swiss-Prot
Match: MPPB_HUMAN (Mitochondrial-processing peptidase subunit beta OS=Homo sapiens GN=PMPCB PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.205e-20
Identity = 53/143 (37.06%), Postives = 82/143 (57.34%), Query Frame = 1
Query:  280 EVKVTTLENGIRIASETSVSPAASIGLYLDCGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHS 708
            E +VT LE+G+R+ASE S     ++GL++D GS YE   + G ++ LE MAFK TK RS L +  E+E +G  + A  SREQ  Y   A    +P  VE+L D ++N    + E+  E   +  E+ E+  N Q ++ + +H+
Sbjct:   57 ETRVTCLESGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQEVVFDYLHA 199          
The following BLAST results are available for this feature:
BLAST of CX295148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
MPPA_SOLTU2.389e-7764.52Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA2_ARATH1.712e-7566.51Probable mitochondrial-processing peptidase subuni... [more]
MPPA1_ARATH1.357e-7263.47Probable mitochondrial-processing peptidase subuni... [more]
QCR1_RAT1.424e-2137.76Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
MPPB_RAT3.172e-2137.76Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_MOUSE3.172e-2137.76Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_BOVIN3.172e-2137.76Mitochondrial-processing peptidase subunit beta OS... [more]
QCR1_MOUSE7.066e-2137.06Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
MPPB_PONAB1.205e-2037.06Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_HUMAN1.205e-2037.06Mitochondrial-processing peptidase subunit beta OS... [more]

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Properties
Property NameValue
Genbank descriptionC05069B01SK PhIFruit1 Citrus clementina cDNA clone C05069B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295148 ID=CX295148; Name=CX295148; organism=Citrus clementina; type=EST; length=709bp
GATTCGGCCGAGGGACAATCGTCGGGGTTTCTGTATCAAACTGGAGAAGC
AGTCACTATGTACAGAGCCACAGTTTCAAGACTTGGATCTCTGAAGGGCC
GTCTTGGCAATTTCCAAGCCATGCGGTATGCAACTTCAGGTGCAGCTGCT
GTTAGGCCATCCTCGCCAGGATTCTTTAGCTGGTTGACTGGAGAACAGTC
TAGTTCTCTTCCTTCTTTGGACACACCGCTTGAGGGTGTTTCTTTTCCAC
CTTCACTTCCTGATTTTGTTGAACCAGGCGAAGTTAAGGTCACGACTCTT
GAAAATGGCATCAGAATAGCATCAGAAACTTCAGTTAGTCCAGCTGCCTC
CATAGGGCTATATCTGGATTGTGGTTCTGTCTACGAGACACCATCGTCAT
GTGGAGCTTCAAACTTGCTGGAAAAGATGGCATTCAAGAGCACAAAGAAC
CGGAGCCACTTGCGCATTGTAAGGGAAGTGGAGGCTATAGGAGGTAGCAT
ATTAGCTTCTGCCTCTCGGGAGCAGATGGGGTACTCCTTTGATGCTCTGA
AGACTTATGTTCCTGAAATGGTAGAGTTGCTTGTTGACTGTGTGAGGAAT
CCCGTGTTTTTGGATTGGGAAGTCAATGAGGAGCTGCGTAAGTTGAAATC
CGAGCTTGGAGAACTTCATAATAATCCTCAAGGTCTACTCTTGGAGGCAA
TTCATTCTA
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