CX295156

Overview
NameCX295156
Unique NameCX295156
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295156_ssr114 microsatellite CX295156_ssr114:114..125. BLAST: Citrus ESTs to Prunus persica proteins V1
CX295156_ssr174 microsatellite CX295156_ssr174:174..185. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15280 contig Ccv1_Contig15280:6..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295156 vs. ExPASy Swiss-Prot
Match: RL72_ARATH (60S ribosomal protein L7-2 OS=Arabidopsis thaliana GN=RPL7B PE=1 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 1.643e-75
Identity = 142/184 (77.17%), Postives = 155/184 (84.24%), Query Frame = 1
Query:  112 LKKKKRXXXXXXXXXXXXXXXXXXXXXTRKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFR 663
            LKK+KR                      RKLI+ R +QY+KEY E++KELI LKREAKLKGGFYV+PEAKLLFIIRIRGINA+DPKTKKILQLLRLRQIFNGVFLKVNKAT+NML RVEPYVTYG+PNLKSVKELIYKRGYGKLN QRIALTDNSI+EQALG+HGIIC EDLIHEILTVGPHF+
Sbjct:   13 LKKRKREEEWALEKKQNVEAAKKKNAENRKLIFKRAEQYSKEYAEKEKELISLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLRRVEPYVTYGFPNLKSVKELIYKRGYGKLNHQRIALTDNSIVEQALGKHGIICTEDLIHEILTVGPHFK 196          
BLAST of CX295156 vs. ExPASy Swiss-Prot
Match: RL74_ARATH (60S ribosomal protein L7-4 OS=Arabidopsis thaliana GN=RPL7D PE=2 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 2.802e-75
Identity = 139/184 (75.54%), Postives = 156/184 (84.78%), Query Frame = 1
Query:  112 LKKKKRXXXXXXXXXXXXXXXXXXXXXTRKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFR 663
            LKK+KR                      RKLI+NR KQY+KEY E+++ELI+LKREAKLKGGFYV+PEAKLLFIIRIRGINA+DPKTKKILQLLRLRQIFNGVFLKVNKAT+NML RVEPYVTYGYPNLKSVKELIYKRG+GKLN QR ALTDNSI++Q LG+HGIIC+EDLIHEI+TVGPHF+
Sbjct:   15 LKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVEDLIHEIMTVGPHFK 198          
BLAST of CX295156 vs. ExPASy Swiss-Prot
Match: RL73_ARATH (60S ribosomal protein L7-3 OS=Arabidopsis thaliana GN=RPL7C PE=2 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 3.660e-75
Identity = 137/156 (87.82%), Postives = 149/156 (95.51%), Query Frame = 1
Query:  196 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFR 663
            RKLI+ R +QYAKEY E+  ELIRLKREAKLKGGFYV+PEAKLLFIIRIRGINA+DPKTKKILQLLRLRQIFNGVFLKVNKAT+NML RVEPYVTYGYPNLKSVKELIYKRGYGKLN QRIALTDNSI++QALG+HGIIC+EDLIHEI+TVGPHF+
Sbjct:   41 RKLIFKRAEQYAKEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIICVEDLIHEIMTVGPHFK 196          
BLAST of CX295156 vs. ExPASy Swiss-Prot
Match: RL7_NEUCR (60S ribosomal protein L7 OS=Neurospora crassa GN=rpl-7 PE=3 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 2.466e-55
Identity = 104/157 (66.24%), Postives = 130/157 (82.80%), Query Frame = 1
Query:  196 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFRR 666
            R +I+ R + Y KEY + ++E IRL+R AK  G F++  EAKL+F+IRI+GIN + PK +KILQLLRL QI NGVF++V KAT  M+  VEP+V YGYPNLKSVKELIYKRGYGK+NKQR+ALTDNSIIE+ LG++GIICMEDLIHEI TVGP+F++
Sbjct:   46 RAVIFKRAETYVKEYRDVEREKIRLQRAAKQDGSFHIPAEAKLIFLIRIKGINKIPPKPRKILQLLRLLQINNGVFVRVTKATAEMIKIVEPWVAYGYPNLKSVKELIYKRGYGKVNKQRVALTDNSIIEENLGKYGIICMEDLIHEIYTVGPNFKQ 202          
BLAST of CX295156 vs. ExPASy Swiss-Prot
Match: RL7_PONAB (60S ribosomal protein L7 OS=Pongo abelii GN=RPL7 PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.221e-55
Identity = 103/156 (66.03%), Postives = 126/156 (80.77%), Query Frame = 1
Query:  196 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFR 663
            RKLIY + K Y KEY +  +  IR+ R A+  G FYV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK+NK+RIALTDN++I ++LG++GIICMEDLIHEI TVG  F+
Sbjct:   46 RKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFK 201          
BLAST of CX295156 vs. ExPASy Swiss-Prot
Match: RL7_MOUSE (60S ribosomal protein L7 OS=Mus musculus GN=Rpl7 PE=2 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 3.221e-55
Identity = 104/156 (66.67%), Postives = 125/156 (80.13%), Query Frame = 1
Query:  196 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFR 663
            RKLIY + K Y KEY +  +  IR+ R A+  G FYV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK+NK+RIALTDNS+I ++LG+ GIICMEDLIHEI TVG  F+
Sbjct:   69 RKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLIARSLGKFGIICMEDLIHEIYTVGKRFK 224          
BLAST of CX295156 vs. ExPASy Swiss-Prot
Match: RL7_MACFA (60S ribosomal protein L7 OS=Macaca fascicularis GN=RPL7 PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.221e-55
Identity = 103/156 (66.03%), Postives = 126/156 (80.77%), Query Frame = 1
Query:  196 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFR 663
            RKLIY + K Y KEY +  +  IR+ R A+  G FYV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK+NK+RIALTDN++I ++LG++GIICMEDLIHEI TVG  F+
Sbjct:   46 RKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEICTVGKRFK 201          
BLAST of CX295156 vs. ExPASy Swiss-Prot
Match: RL7_HUMAN (60S ribosomal protein L7 OS=Homo sapiens GN=RPL7 PE=1 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.221e-55
Identity = 103/156 (66.03%), Postives = 126/156 (80.77%), Query Frame = 1
Query:  196 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFR 663
            RKLIY + K Y KEY +  +  IR+ R A+  G FYV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK+NK+RIALTDN++I ++LG++GIICMEDLIHEI TVG  F+
Sbjct:   47 RKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFK 202          
BLAST of CX295156 vs. ExPASy Swiss-Prot
Match: RL7_BOVIN (60S ribosomal protein L7 OS=Bos taurus GN=RPL7 PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.221e-55
Identity = 103/156 (66.03%), Postives = 126/156 (80.77%), Query Frame = 1
Query:  196 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFR 663
            RKLIY + K Y KEY +  +  IR+ R A+  G FYV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK+NK+RIALTDN++I ++LG++GIICMEDLIHEI TVG  F+
Sbjct:   47 RKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFK 202          
BLAST of CX295156 vs. ExPASy Swiss-Prot
Match: RL7_RAT (60S ribosomal protein L7 OS=Rattus norvegicus GN=Rpl7 PE=1 SV=2)

HSP 1 Score: 214.157 bits (544), Expect = 5.494e-55
Identity = 103/156 (66.03%), Postives = 125/156 (80.13%), Query Frame = 1
Query:  196 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFR 663
            RKLIY + K Y KEY +  +  IR+ R A+  G FYV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK+NK+RIALTDNS++ ++LG+ GIICMEDLIHEI TVG  F+
Sbjct:   59 RKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASVNMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLVARSLGKFGIICMEDLIHEIYTVGKRFK 214          
The following BLAST results are available for this feature:
BLAST of CX295156 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RL72_ARATH1.643e-7577.1760S ribosomal protein L7-2 OS=Arabidopsis thaliana... [more]
RL74_ARATH2.802e-7575.5460S ribosomal protein L7-4 OS=Arabidopsis thaliana... [more]
RL73_ARATH3.660e-7587.8260S ribosomal protein L7-3 OS=Arabidopsis thaliana... [more]
RL7_NEUCR2.466e-5566.2460S ribosomal protein L7 OS=Neurospora crassa GN=r... [more]
RL7_PONAB3.221e-5566.0360S ribosomal protein L7 OS=Pongo abelii GN=RPL7 P... [more]
RL7_MOUSE3.221e-5566.6760S ribosomal protein L7 OS=Mus musculus GN=Rpl7 P... [more]
RL7_MACFA3.221e-5566.0360S ribosomal protein L7 OS=Macaca fascicularis GN... [more]
RL7_HUMAN3.221e-5566.0360S ribosomal protein L7 OS=Homo sapiens GN=RPL7 P... [more]
RL7_BOVIN3.221e-5566.0360S ribosomal protein L7 OS=Bos taurus GN=RPL7 PE=... [more]
RL7_RAT5.494e-5566.0360S ribosomal protein L7 OS=Rattus norvegicus GN=R... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05069B09SK PhIFruit1 Citrus clementina cDNA clone C05069B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295156 ID=CX295156; Name=CX295156; organism=Citrus clementina; type=EST; length=694bp
GGCGCGAAGCCAGAACGCCTCCGTGAAGAAGATAGATCTAAAAGACCTCT
AAGAACAAATTGAACCAAAGAGATGGCTGAAGCAGCAGCTGTTGTGGTAC
CAGAGTCAGTGTTGAAGAAGAAGAAGAGAGAGGAGGAATGGGCATTGGCC
AAGAAGCAGGAGCTGGAAGCCGCGAAGAAGAAGAAGGCTGAGACCCGGAA
GCTCATTTACAACAGAACCAAACAGTACGCTAAAGAGTACGATGAAGAGC
AAAAAGAACTCATTCGTTTGAAGCGTGAGGCCAAGCTTAAGGGTGGATTT
TATGTCAACCCAGAAGCTAAGCTTTTGTTCATTATCAGGATTCGCGGTAT
CAATGCTGTTGATCCAAAGACCAAGAAAATTTTGCAGCTTCTCCGTTTGA
GACAGATTTTTAATGGTGTCTTTTTGAAAGTGAACAAAGCCACACTCAAT
ATGCTGCACAGAGTTGAGCCCTATGTAACATATGGGTACCCCAATTTAAA
GAGTGTCAAAGAACTGATTTACAAGAGGGGTTACGGCAAATTAAATAAGC
AGAGGATTGCTTTGACCGACAATTCTATCATCGAACAGGCTCTTGGGCAG
CATGGAATTATCTGCATGGAAGATCTCATCCATGAGATTTTGACTGTTGG
TCCTCACTTCAGGAGGCAAACACTTCCTATGGCCCTTCAGCTCA
back to top