CX295188

Overview
NameCX295188
Unique NameCX295188
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length539
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295188_ssr104 microsatellite CX295188_ssr104:104..118. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig625 contig Ccv1_Contig625:1..539. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX295188 vs. ExPASy Swiss-Prot
Match: PRF1_SOLLC (36.4 kDa proline-rich protein OS=Solanum lycopersicum GN=TPRP-F1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.998e-17
Identity = 44/83 (53.01%), Postives = 50/83 (60.24%), Query Frame = 2 
Query:  161 IDTLKLGACVDVLGGLVHIGIGSSAKDACCPVLQGXXXXXXXXXXXXXXXXXXXXXXXXXPIALEVLI-DCGKHPPPGFQCPA 406
            ID LKLGACVDVLGGL+HIGIG SAK  CCP+L G                         PIAL+VLI DCGK+PP  F+CP+
Sbjct:  263 IDALKLGACVDVLGGLIHIGIGGSAKQTCCPLLGGLVDLDAAICLCTTIRLKLLNINIILPIALQVLIDDCGKYPPKDFKCPS 345
The following BLAST results are available for this feature:
BLAST of CX295188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PRF1_SOLLC5.998e-1753.0136.4 kDa proline-rich protein OS=Solanum lycopersi... [more]
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Properties
Property NameValue
Genbank descriptionC05069E05SK PhIFruit1 Citrus clementina cDNA clone C05069E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295188 ID=CX295188; Name=CX295188; organism=Citrus clementina; type=EST; length=539bp
TTATACCCCCAGCCCTACCCCACCATATGTACCATCACCACCGTATACCC
CAAGCCCTACCCCGCCATATGTACCATCACCACCGTATACCCCAAGCCCT
AGCCCACCACCACCACCAAGTGGAACACCGTGTCCTCCGCCGCCGCCACC
AACTTGTCCCATTGATACTCTCAAGCTTGGTGCATGCGTCGACGTGTTGG
GTGGTCTAGTACACATCGGTATAGGCAGCAGTGCAAAGGACGCTTGCTGC
CCCGTGCTGCAGGGGCTACTGGACTTGGATGCTGCATTATGTCTTTGCAC
CACCATTAAACTTAAGCTTTTGAATATCAATCTTATTATACCGATCGCCC
TTGAAGTGCTTATTGACTGCGGCAAGCATCCGCCGCCCGGATTCCAGTGT
CCTGCCTAATTGGTGACGCTTTCCAGCCATGCAATTGATGAATGCGACTT
GTTTGTTTTGGAGATTTTGTCAAAGATAATGACATGTAAGTGCATAAAGT
GGAAGTACTTCATGATATCGAAGTTTGTCTTAATATATG
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